Wall clock time and date at job start Tue Mar 31 2020 14:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 C 1.52995 * 109.47624 * 120.00273 * 2 1 3 5 5 H 1.08997 * 109.47205 * 300.00198 * 4 2 1 6 6 N 1.46496 * 109.47468 * 179.97438 * 4 2 1 7 7 C 1.34774 * 119.99544 * 85.00158 * 6 4 2 8 8 O 1.21279 * 120.00472 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00020 * 180.02562 * 7 6 4 10 10 S 1.81002 * 109.47200 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99878 * 179.97438 * 10 9 7 12 12 H 1.08006 * 120.00031 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00096 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47409 * 89.99815 * 15 13 11 17 17 H 1.48504 * 109.46732 * 209.99538 * 15 13 11 18 18 H 1.48503 * 109.47095 * 329.99265 * 15 13 11 19 19 C 1.53008 * 109.46698 * 59.99631 * 4 2 1 20 20 H 1.08992 * 109.47451 * 300.00089 * 19 4 2 21 21 O 1.42897 * 109.47031 * 60.00303 * 19 4 2 22 22 C 1.50706 * 109.46932 * 180.02562 * 19 4 2 23 23 C 1.38233 * 119.99869 * 279.72820 * 22 19 4 24 24 C 1.38236 * 120.00013 * 179.78531 * 23 22 19 25 25 C 1.38237 * 119.99662 * 0.44486 * 24 23 22 26 26 C 1.38238 * 120.00083 * 359.80901 * 25 24 23 27 27 C 1.38230 * 119.99830 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46319 * 299.99443 * 1 2 3 29 29 H 1.08990 * 109.47376 * 59.99514 * 1 2 3 30 30 H 1.08994 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46814 * 240.00549 * 2 1 3 32 32 H 1.09002 * 109.47159 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47295 * 300.00115 * 3 2 1 34 34 H 1.08997 * 109.46706 * 60.00428 * 3 2 1 35 35 H 0.96994 * 120.00700 * 265.00278 * 6 4 2 36 36 H 1.09001 * 109.46953 * 299.99667 * 9 7 6 37 37 H 1.09000 * 109.47318 * 59.99264 * 9 7 6 38 38 H 0.97001 * 119.99701 * 180.02562 * 14 13 11 39 39 H 0.96700 * 114.00077 * 60.00082 * 21 19 4 40 40 H 1.07998 * 120.00311 * 359.97438 * 23 22 19 41 41 H 1.08000 * 120.00509 * 180.27506 * 24 23 22 42 42 H 1.08007 * 119.99829 * 179.83465 * 25 24 23 43 43 H 1.07998 * 119.99736 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.99728 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0402 -0.7213 1.2491 5 1 1.6769 -0.2075 2.1391 6 7 3.5051 -0.7218 1.2488 7 6 4.1794 0.3359 1.7418 8 8 3.5734 1.2878 2.1862 9 6 5.6865 0.3357 1.7410 10 16 6.2904 1.8825 2.4614 11 6 8.0282 1.6191 2.3387 12 1 8.4066 0.7019 1.9119 13 6 8.9110 2.5898 2.7914 14 7 8.4498 3.7074 3.3119 15 14 10.7534 2.3109 2.6606 16 1 11.2412 2.8289 1.3572 17 1 11.4417 3.0248 3.7659 18 1 11.0418 0.8572 2.7548 19 6 1.5301 -2.1638 1.2490 20 1 0.4402 -2.1638 1.2491 21 8 2.0063 -2.8374 0.0822 22 6 2.0320 -2.8742 2.4798 23 6 3.3211 -3.3720 2.5130 24 6 3.7830 -4.0197 3.6435 25 6 2.9527 -4.1775 4.7374 26 6 1.6618 -3.6842 4.7022 27 6 1.2015 -3.0327 3.5733 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.9899 -1.4832 0.8937 36 1 6.0500 -0.5062 2.3302 37 1 6.0493 0.2461 0.7171 38 1 9.0667 4.3860 3.6280 39 1 2.9703 -2.8756 0.0161 40 1 3.9685 -3.2524 1.6568 41 1 4.7917 -4.4048 3.6712 42 1 3.3127 -4.6859 5.6197 43 1 1.0133 -3.8072 5.5570 44 1 0.1928 -2.6477 3.5457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790393668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:18 Heat of formation + Delta-G solvation = -70.858768 kcal Electronic energy + Delta-G solvation = -25499.447710 eV Core-core repulsion = 21928.607569 eV Total energy + Delta-G solvation = -3570.840140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66152 -39.06083 -37.51707 -35.32255 -33.28936 -32.43999 -31.84366 -31.02228 -29.46302 -27.88011 -26.64450 -25.48668 -23.90829 -22.84473 -21.29692 -20.63541 -20.01204 -18.19766 -17.65726 -16.69936 -16.64597 -16.00581 -15.46442 -15.33413 -15.15219 -14.81630 -14.48713 -14.16242 -13.94647 -13.76624 -13.56533 -13.29568 -12.94859 -12.70925 -12.66617 -12.43260 -12.16972 -12.09375 -11.82282 -11.52108 -11.40859 -11.24975 -11.07699 -11.03463 -10.81917 -10.74142 -10.62522 -10.29103 -9.81898 -9.36735 -9.12726 -9.07737 -8.96208 -8.76305 -8.24812 -6.50718 -6.22947 -3.93211 1.12654 1.22094 2.98259 3.09217 3.21191 3.26349 3.29938 3.53786 3.66800 4.11542 4.19273 4.25798 4.56615 4.63634 4.77592 4.89719 4.95839 5.02466 5.09273 5.12204 5.12451 5.27453 5.29583 5.41509 5.55086 5.63060 5.72387 5.75714 5.82374 5.84952 5.87421 5.95830 6.00754 6.11134 6.16104 6.25599 6.30596 6.34147 6.36730 6.58629 6.68270 6.79025 7.20341 7.58053 7.62854 8.33784 8.60694 9.22572 10.84453 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003659 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.002390 B = 7650.455997 C = 9041.775124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.141 4.141 4 C 0.126 3.874 5 H 0.097 0.903 6 N -0.732 5.732 7 C 0.536 3.464 8 O -0.508 6.508 9 C -0.154 4.154 10 S -0.057 6.057 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.140 3.860 20 H 0.121 0.879 21 O -0.547 6.547 22 C -0.114 4.114 23 C -0.106 4.106 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.110 4.110 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.389 0.611 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.370 0.630 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.991 -16.222 -3.549 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.198 4.198 4 C 0.020 3.980 5 H 0.115 0.885 6 N -0.388 5.388 7 C 0.322 3.678 8 O -0.381 6.381 9 C -0.305 4.305 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.080 3.920 20 H 0.139 0.861 21 O -0.352 6.352 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.128 4.128 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.223 0.777 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.218 0.782 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.598 -14.506 -2.825 22.224 hybrid contribution 2.836 -1.550 -0.524 3.275 sum -13.761 -16.056 -3.349 21.410 Atomic orbital electron populations 1.21873 0.94993 1.01536 1.02103 1.21435 0.95650 0.97186 0.97685 1.21888 1.01912 0.94613 1.01396 1.21661 0.81038 0.95176 1.00102 0.88485 1.46011 1.06020 1.21076 1.65671 1.20176 0.89407 0.81770 0.76409 1.90710 1.69686 1.33531 1.44198 1.23543 0.93634 1.07924 1.05404 1.85387 1.03886 1.14757 1.78995 1.22867 0.91157 1.06780 1.47623 0.91004 1.24978 0.99570 0.94459 0.94490 1.70016 1.35332 1.06762 1.38169 0.86185 0.82993 0.78436 0.77997 1.20257 1.20747 1.19709 1.21268 0.99745 0.88911 0.82040 0.86102 1.86644 1.26523 1.79136 1.42928 1.20447 0.94866 0.99451 0.96652 1.20792 0.94852 0.98439 0.98317 1.21142 0.99793 0.98824 0.93371 1.21190 0.94138 0.99897 0.98461 1.21137 0.96146 0.98287 0.97964 1.20952 0.99552 0.99111 0.93169 0.92555 0.92419 0.92536 0.90679 0.92216 0.93699 0.91775 0.77685 0.89440 0.89406 0.92188 0.78201 0.86718 0.85811 0.86030 0.85973 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 2 C -0.10 -1.12 2.54 -90.62 -0.23 -1.35 16 3 C -0.14 -1.99 7.72 37.16 0.29 -1.71 16 4 C 0.13 1.44 1.66 -67.93 -0.11 1.32 16 5 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 6 N -0.73 -9.15 4.07 -53.81 -0.22 -9.37 16 7 C 0.54 9.45 6.20 -10.98 -0.07 9.38 16 8 O -0.51 -10.77 12.99 5.56 0.07 -10.69 16 9 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 11 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 15 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C 0.14 1.31 2.73 -27.88 -0.08 1.24 16 20 H 0.12 1.02 6.29 -51.93 -0.33 0.70 16 21 O -0.55 -5.04 12.51 -35.23 -0.44 -5.48 16 22 C -0.11 -1.16 4.88 -104.62 -0.51 -1.67 16 23 C -0.11 -1.06 8.32 -39.58 -0.33 -1.39 16 24 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.08 9.67 -39.59 -0.38 -1.47 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 31 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 32 H 0.06 0.99 5.78 -51.93 -0.30 0.69 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 35 H 0.39 3.79 5.47 -40.82 -0.22 3.57 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.37 2.57 6.12 45.56 0.28 2.85 16 40 H 0.11 0.91 5.51 -52.49 -0.29 0.62 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.97 8.04 -52.49 -0.42 0.54 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -34.13 365.52 -9.18 -43.30 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.73 Total: 6.44 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.87 Total: -16.94 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.51 Total: -34.66 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.37 Total: -16.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.13 -9.18 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.557 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds