Wall clock time and date at job start Tue Mar 31 2020 14:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 C 1.52995 * 109.47624 * 120.00273 * 2 1 3 5 5 H 1.08997 * 109.47205 * 300.00198 * 4 2 1 6 6 N 1.46496 * 109.47468 * 179.97438 * 4 2 1 7 7 C 1.34774 * 119.99544 * 85.00158 * 6 4 2 8 8 O 1.21279 * 120.00472 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00020 * 180.02562 * 7 6 4 10 10 S 1.81002 * 109.47200 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99878 * 179.97438 * 10 9 7 12 12 H 1.08006 * 120.00031 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00096 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47409 * 89.99815 * 15 13 11 17 17 H 1.48504 * 109.46732 * 209.99538 * 15 13 11 18 18 H 1.48503 * 109.47095 * 329.99265 * 15 13 11 19 19 C 1.53008 * 109.46698 * 59.99631 * 4 2 1 20 20 H 1.08992 * 109.47451 * 300.00089 * 19 4 2 21 21 O 1.42897 * 109.47031 * 60.00303 * 19 4 2 22 22 C 1.50706 * 109.46932 * 180.02562 * 19 4 2 23 23 C 1.38233 * 119.99869 * 279.72820 * 22 19 4 24 24 C 1.38236 * 120.00013 * 179.78531 * 23 22 19 25 25 C 1.38237 * 119.99662 * 0.44486 * 24 23 22 26 26 C 1.38238 * 120.00083 * 359.80901 * 25 24 23 27 27 C 1.38230 * 119.99830 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46319 * 299.99443 * 1 2 3 29 29 H 1.08990 * 109.47376 * 59.99514 * 1 2 3 30 30 H 1.08994 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46814 * 240.00549 * 2 1 3 32 32 H 1.09002 * 109.47159 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47295 * 300.00115 * 3 2 1 34 34 H 1.08997 * 109.46706 * 60.00428 * 3 2 1 35 35 H 0.96994 * 120.00700 * 265.00278 * 6 4 2 36 36 H 1.09001 * 109.46953 * 299.99667 * 9 7 6 37 37 H 1.09000 * 109.47318 * 59.99264 * 9 7 6 38 38 H 0.97001 * 119.99701 * 180.02562 * 14 13 11 39 39 H 0.96700 * 114.00077 * 60.00082 * 21 19 4 40 40 H 1.07998 * 120.00311 * 359.97438 * 23 22 19 41 41 H 1.08000 * 120.00509 * 180.27506 * 24 23 22 42 42 H 1.08007 * 119.99829 * 179.83465 * 25 24 23 43 43 H 1.07998 * 119.99736 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.99728 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0402 -0.7213 1.2491 5 1 1.6769 -0.2075 2.1391 6 7 3.5051 -0.7218 1.2488 7 6 4.1794 0.3359 1.7418 8 8 3.5734 1.2878 2.1862 9 6 5.6865 0.3357 1.7410 10 16 6.2904 1.8825 2.4614 11 6 8.0282 1.6191 2.3387 12 1 8.4066 0.7019 1.9119 13 6 8.9110 2.5898 2.7914 14 7 8.4498 3.7074 3.3119 15 14 10.7534 2.3109 2.6606 16 1 11.2412 2.8289 1.3572 17 1 11.4417 3.0248 3.7659 18 1 11.0418 0.8572 2.7548 19 6 1.5301 -2.1638 1.2490 20 1 0.4402 -2.1638 1.2491 21 8 2.0063 -2.8374 0.0822 22 6 2.0320 -2.8742 2.4798 23 6 3.3211 -3.3720 2.5130 24 6 3.7830 -4.0197 3.6435 25 6 2.9527 -4.1775 4.7374 26 6 1.6618 -3.6842 4.7022 27 6 1.2015 -3.0327 3.5733 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.9899 -1.4832 0.8937 36 1 6.0500 -0.5062 2.3302 37 1 6.0493 0.2461 0.7171 38 1 9.0667 4.3860 3.6280 39 1 2.9703 -2.8756 0.0161 40 1 3.9685 -3.2524 1.6568 41 1 4.7917 -4.4048 3.6712 42 1 3.3127 -4.6859 5.6197 43 1 1.0133 -3.8072 5.5570 44 1 0.1928 -2.6477 3.5457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790393668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:18 Heat of formation + Delta-G solvation = -93.432006 kcal Electronic energy + Delta-G solvation = -25500.426559 eV Core-core repulsion = 21928.607569 eV Total energy + Delta-G solvation = -3571.818989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65082 -40.10024 -38.47244 -36.23853 -34.59303 -34.47243 -32.62610 -31.74866 -30.87525 -28.88509 -27.77244 -27.45149 -24.82057 -23.58527 -22.07345 -21.90381 -21.01675 -19.90229 -18.70797 -17.94684 -17.72727 -16.88404 -16.86868 -16.63900 -16.34062 -16.10092 -15.89309 -15.19845 -14.91961 -14.80355 -14.72977 -14.49128 -14.26527 -13.82236 -13.56767 -13.46703 -13.41124 -13.16380 -12.94555 -12.88225 -12.82708 -12.63758 -12.44471 -12.27358 -11.96466 -11.79363 -11.70883 -11.53473 -11.14362 -11.12469 -10.83783 -10.26437 -10.05370 -9.80473 -9.64122 -8.65018 -8.34706 -6.11819 0.38329 0.49107 1.27009 1.41723 1.46794 1.56877 1.67401 2.22302 2.28538 2.80998 2.99694 3.30208 3.40129 3.45447 3.74679 3.89296 3.96850 4.05287 4.08767 4.12900 4.27036 4.30469 4.36573 4.39787 4.50026 4.58728 4.63282 4.77534 4.82460 4.84134 4.99006 5.03975 5.08950 5.12495 5.23246 5.35237 5.41707 5.47293 5.53270 5.53962 5.61580 5.63112 6.08691 6.19606 6.44967 6.57569 7.06977 7.27927 8.74398 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003659 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.002390 B = 7650.455997 C = 9041.775124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.136 4.136 4 C 0.129 3.871 5 H 0.075 0.925 6 N -0.707 5.707 7 C 0.540 3.460 8 O -0.549 6.549 9 C -0.131 4.131 10 S -0.145 6.145 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.911 5.911 15 Si 0.996 3.004 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.258 1.258 19 C 0.156 3.844 20 H 0.136 0.864 21 O -0.550 6.550 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.122 4.122 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.405 0.595 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.271 0.729 39 H 0.380 0.620 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 -18.657 -4.652 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.194 4.194 4 C 0.024 3.976 5 H 0.094 0.906 6 N -0.363 5.363 7 C 0.326 3.674 8 O -0.426 6.426 9 C -0.282 4.282 10 S 0.082 5.918 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.548 5.548 15 Si 0.818 3.182 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.182 1.182 19 C 0.096 3.904 20 H 0.154 0.846 21 O -0.356 6.356 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.243 0.757 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.591 -16.998 -3.956 24.080 hybrid contribution 2.738 -0.865 -0.196 2.878 sum -13.853 -17.863 -4.152 22.983 Atomic orbital electron populations 1.21851 0.93120 1.02817 1.02359 1.21391 0.97172 0.95004 0.97719 1.21815 0.99996 0.96817 1.00740 1.21742 0.79645 0.96843 0.99395 0.90647 1.45707 1.06783 1.19962 1.63806 1.19842 0.88611 0.82397 0.76587 1.90708 1.70064 1.35394 1.46424 1.23379 0.95091 1.03909 1.05853 1.85552 1.04972 1.20728 1.80511 1.23207 0.91425 1.07246 1.47575 0.90054 1.26086 1.05139 0.93956 0.93782 1.70181 1.37287 1.07936 1.39385 0.84992 0.76002 0.79029 0.78213 1.19328 1.20354 1.18181 1.21134 1.00365 0.86901 0.81997 0.84631 1.86642 1.27594 1.78828 1.42557 1.20610 0.95196 0.99932 0.97068 1.21075 0.95202 0.98426 0.98980 1.21424 1.00560 0.99166 0.93663 1.21500 0.94397 0.99960 0.99061 1.21447 0.96496 0.98095 0.98628 1.21276 1.00500 0.99036 0.93195 0.92843 0.91745 0.90690 0.89716 0.94996 0.92607 0.94127 0.75702 0.87731 0.87566 0.92039 0.77045 0.85040 0.84715 0.84615 0.84249 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.84 71.98 0.64 -1.74 16 2 C -0.09 -1.96 2.54 -10.79 -0.03 -1.98 16 3 C -0.14 -3.88 7.72 71.98 0.56 -3.33 16 4 C 0.13 2.77 1.66 44.99 0.07 2.84 16 5 H 0.08 2.03 7.58 -2.39 -0.02 2.02 16 6 N -0.71 -16.74 4.07 -442.54 -1.80 -18.54 16 7 C 0.54 19.00 6.20 87.66 0.54 19.54 16 8 O -0.55 -24.06 12.99 -3.02 -0.04 -24.10 16 9 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 10 S -0.14 -7.94 20.57 -56.49 -1.16 -9.11 16 11 C -0.55 -31.01 9.50 67.95 0.65 -30.36 16 12 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 13 C 0.02 0.86 5.49 84.86 0.47 1.33 16 14 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 15 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 19 C 0.16 2.53 2.73 29.85 0.08 2.61 16 20 H 0.14 1.86 6.29 -2.39 -0.02 1.85 16 21 O -0.55 -8.38 12.51 -148.98 -1.86 -10.24 16 22 C -0.13 -2.35 4.88 -19.87 -0.10 -2.45 16 23 C -0.12 -2.15 8.32 22.27 0.19 -1.96 16 24 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 25 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 26 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 27 C -0.12 -2.21 9.67 22.27 0.22 -1.99 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.98 6.43 -2.39 -0.02 0.97 16 31 H 0.08 1.66 7.68 -2.38 -0.02 1.64 16 32 H 0.03 1.07 5.78 -2.39 -0.01 1.05 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.33 7.53 -2.39 -0.02 1.31 16 35 H 0.41 6.92 5.47 -92.71 -0.51 6.41 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.38 4.02 6.12 -74.06 -0.45 3.56 16 40 H 0.13 1.75 5.51 -2.91 -0.02 1.73 16 41 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.14 1.92 8.04 -2.91 -0.02 1.89 16 Total: -1.00 -76.29 365.52 1.90 -74.39 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.06 Total: 26.36 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 4.39 Total: -28.59 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.52 Total: -74.13 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.90 Total: -34.34 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -76.29 1.90 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.044 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds