Wall clock time and date at job start Tue Mar 31 2020 14:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46821 * 2 1 4 4 C 1.53006 * 109.46668 * 119.99357 * 2 1 3 5 5 H 1.08992 * 109.47123 * 301.92666 * 4 2 1 6 6 N 1.46496 * 109.47091 * 61.93278 * 4 2 1 7 7 C 1.34780 * 119.99568 * 274.99357 * 6 4 2 8 8 O 1.21275 * 120.00083 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99918 * 179.97438 * 7 6 4 10 10 S 1.80997 * 109.47385 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00075 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00079 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99912 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00028 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47057 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46900 * 120.00032 * 15 13 11 18 18 H 1.48496 * 109.46846 * 239.99739 * 15 13 11 19 19 C 1.53003 * 109.46745 * 181.92740 * 4 2 1 20 20 H 1.09004 * 109.46992 * 63.38154 * 19 4 2 21 21 O 1.42896 * 109.47356 * 303.38094 * 19 4 2 22 22 C 1.50701 * 109.46910 * 183.38003 * 19 4 2 23 23 C 1.38232 * 119.99736 * 84.73377 * 22 19 4 24 24 C 1.38235 * 120.00123 * 179.81197 * 23 22 19 25 25 C 1.38241 * 119.99557 * 0.39050 * 24 23 22 26 26 C 1.38235 * 120.00234 * 359.85971 * 25 24 23 27 27 C 1.38230 * 119.99963 * 265.00110 * 22 19 4 28 28 H 1.08998 * 109.47719 * 292.99409 * 1 2 3 29 29 H 1.09001 * 109.47032 * 52.99613 * 1 2 3 30 30 H 1.09005 * 109.47103 * 172.99001 * 1 2 3 31 31 H 1.08995 * 109.47266 * 239.99584 * 2 1 3 32 32 H 1.09005 * 109.46403 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46965 * 299.99144 * 3 2 1 34 34 H 1.08995 * 109.47540 * 59.99752 * 3 2 1 35 35 H 0.96996 * 120.00549 * 94.99828 * 6 4 2 36 36 H 1.09006 * 109.47015 * 300.00478 * 9 7 6 37 37 H 1.09003 * 109.47061 * 60.00065 * 9 7 6 38 38 H 0.97004 * 120.00496 * 179.97438 * 14 13 11 39 39 H 0.96696 * 114.00604 * 300.00259 * 21 19 4 40 40 H 1.08000 * 120.00460 * 359.97438 * 23 22 19 41 41 H 1.07996 * 120.00599 * 180.22665 * 24 23 22 42 42 H 1.08004 * 119.99847 * 179.83651 * 25 24 23 43 43 H 1.07993 * 119.99949 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00422 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6486 -0.2276 2.1389 6 7 1.5899 -2.1151 1.2265 7 6 0.3686 -2.4367 1.6970 8 8 -0.3580 -1.5721 2.1390 9 6 -0.0946 -3.8706 1.6729 10 16 -1.7631 -3.9774 2.3662 11 6 -2.0450 -5.7106 2.2197 12 1 -1.2821 -6.3480 1.7976 13 6 -3.2475 -6.2567 2.6467 14 7 -4.1775 -5.4798 3.1606 15 14 -3.5460 -8.0942 2.4920 16 1 -2.3535 -8.7402 1.8873 17 1 -3.7915 -8.6708 3.8383 18 1 -4.7301 -8.3322 1.6281 19 6 3.5691 -0.6793 1.2739 20 1 3.9031 0.3554 1.3515 21 8 4.0808 -1.2560 0.0708 22 6 4.0741 -1.4604 2.4597 23 6 4.2399 -2.8295 2.3656 24 6 4.7067 -3.5455 3.4520 25 6 5.0001 -2.8933 4.6351 26 6 4.8293 -1.5249 4.7308 27 6 4.3661 -0.8085 3.6431 28 1 -0.3634 0.4014 0.9460 29 1 -0.3633 0.6185 -0.8207 30 1 -0.3633 -1.0200 -0.1254 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.1709 -2.8066 0.8727 36 1 -0.1050 -4.2318 0.6445 37 1 0.5855 -4.4821 2.2659 38 1 -5.0180 -5.8613 3.4587 39 1 3.8228 -2.1781 -0.0642 40 1 4.0072 -3.3395 1.4425 41 1 4.8398 -4.6146 3.3774 42 1 5.3623 -3.4531 5.4848 43 1 5.0581 -1.0156 5.6552 44 1 4.2329 0.2607 3.7179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790393669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:21 Heat of formation + Delta-G solvation = -72.475883 kcal Electronic energy + Delta-G solvation = -25508.986131 eV Core-core repulsion = 21938.075868 eV Total energy + Delta-G solvation = -3570.910264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64934 -39.04299 -37.52309 -35.30770 -33.29254 -32.43898 -31.83396 -31.01726 -29.45397 -27.86989 -26.63923 -25.48611 -23.91255 -22.83822 -21.29908 -20.62729 -19.98980 -18.18942 -17.66942 -16.69243 -16.64718 -15.99092 -15.44744 -15.29914 -15.15010 -14.81660 -14.49266 -14.15451 -13.96066 -13.77537 -13.55400 -13.28967 -12.96395 -12.70161 -12.65348 -12.42961 -12.16120 -12.07883 -11.81487 -11.53826 -11.39576 -11.25212 -11.08267 -11.02848 -10.83024 -10.74180 -10.62868 -10.29686 -9.80714 -9.35122 -9.12313 -9.08386 -8.94623 -8.76073 -8.24035 -6.50393 -6.22959 -3.93067 1.13139 1.22054 2.99372 3.10248 3.20417 3.26737 3.30982 3.54166 3.67676 4.10001 4.19285 4.26615 4.58000 4.62800 4.77728 4.89900 4.96145 5.02630 5.09490 5.12465 5.12809 5.28660 5.29770 5.41281 5.55485 5.63271 5.72989 5.75875 5.82371 5.85779 5.87894 5.97462 6.00358 6.11860 6.16120 6.25769 6.30516 6.34254 6.36854 6.60021 6.69229 6.79182 7.20529 7.58577 7.64403 8.34163 8.61944 9.22716 10.84488 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.003689 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.385304 B = 7587.778450 C = 8996.238880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.147 4.147 4 C 0.126 3.874 5 H 0.097 0.903 6 N -0.732 5.732 7 C 0.536 3.464 8 O -0.508 6.508 9 C -0.154 4.154 10 S -0.057 6.057 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.917 3.083 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.140 3.860 20 H 0.122 0.878 21 O -0.547 6.547 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.110 4.110 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.389 0.611 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.370 0.630 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.140 9.150 -3.271 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.020 3.980 5 H 0.115 0.885 6 N -0.387 5.387 7 C 0.322 3.678 8 O -0.382 6.382 9 C -0.305 4.305 10 S 0.169 5.831 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.080 3.920 20 H 0.139 0.861 21 O -0.352 6.352 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.223 0.777 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.218 0.782 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.990 11.204 -2.513 22.192 hybrid contribution 0.611 -3.190 -0.576 3.299 sum 19.601 8.014 -3.088 21.400 Atomic orbital electron populations 1.21887 0.93774 1.02200 1.01967 1.21427 0.96920 0.95875 0.97647 1.21873 1.00820 0.95774 1.02026 1.21681 0.92756 0.83451 1.00090 0.88504 1.45993 1.18051 1.08397 1.66290 1.20180 0.80504 0.90680 0.76411 1.90699 1.53414 1.50053 1.44022 1.23535 1.06659 0.94926 1.05337 1.85384 1.07071 1.10662 1.79971 1.22908 1.04588 0.92782 1.48067 0.90955 1.24980 0.94976 0.99044 0.94518 1.70024 1.06178 1.35304 1.38778 0.86135 0.78340 0.83117 0.78018 1.19630 1.20567 1.20548 1.21257 0.91446 0.97534 0.81720 0.86096 1.86638 1.76655 1.30970 1.40984 1.20442 0.99998 0.94625 0.96205 1.20776 0.99860 0.93336 0.98692 1.21131 0.98800 0.99992 0.93178 1.21188 1.00023 0.94712 0.97808 1.21141 0.99381 0.94435 0.98460 1.20944 0.99233 0.99946 0.92683 0.91448 0.93670 0.92527 0.90736 0.92431 0.92465 0.92616 0.77665 0.89435 0.89459 0.92244 0.78168 0.86666 0.85844 0.86037 0.85966 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.64 37.16 0.28 -1.71 16 2 C -0.10 -1.11 2.49 -90.62 -0.23 -1.34 16 3 C -0.15 -1.38 8.79 37.16 0.33 -1.05 16 4 C 0.13 1.43 1.71 -67.93 -0.12 1.31 16 5 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 6 N -0.73 -9.19 4.20 -53.81 -0.23 -9.41 16 7 C 0.54 9.48 6.36 -10.98 -0.07 9.41 16 8 O -0.51 -10.78 12.85 5.56 0.07 -10.71 16 9 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 10 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 11 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 15 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.14 1.30 2.59 -27.88 -0.07 1.23 16 20 H 0.12 1.02 6.49 -51.93 -0.34 0.68 16 21 O -0.55 -4.98 12.36 -35.23 -0.44 -5.42 16 22 C -0.11 -1.14 4.80 -104.63 -0.50 -1.64 16 23 C -0.11 -1.06 8.23 -39.58 -0.33 -1.39 16 24 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.11 -1.10 9.68 -39.58 -0.38 -1.48 16 28 H 0.07 1.08 7.20 -51.93 -0.37 0.70 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.93 6.36 -51.93 -0.33 0.60 16 31 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 32 H 0.06 0.48 6.47 -51.93 -0.34 0.14 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.39 3.84 5.64 -40.82 -0.23 3.61 16 36 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.37 2.53 6.16 45.56 0.28 2.81 16 40 H 0.12 0.88 5.64 -52.49 -0.30 0.58 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -34.14 365.91 -9.20 -43.33 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.76 Total: 6.35 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -1.86 Total: -16.89 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.51 Total: -34.72 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.36 Total: -16.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.14 -9.20 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.142 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds