Wall clock time and date at job start Tue Mar 31 2020 14:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46821 * 2 1 4 4 C 1.53006 * 109.46668 * 119.99357 * 2 1 3 5 5 H 1.08992 * 109.47123 * 301.92666 * 4 2 1 6 6 N 1.46496 * 109.47091 * 61.93278 * 4 2 1 7 7 C 1.34780 * 119.99568 * 274.99357 * 6 4 2 8 8 O 1.21275 * 120.00083 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99918 * 179.97438 * 7 6 4 10 10 S 1.80997 * 109.47385 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00075 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00079 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99912 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00028 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47057 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46900 * 120.00032 * 15 13 11 18 18 H 1.48496 * 109.46846 * 239.99739 * 15 13 11 19 19 C 1.53003 * 109.46745 * 181.92740 * 4 2 1 20 20 H 1.09004 * 109.46992 * 63.38154 * 19 4 2 21 21 O 1.42896 * 109.47356 * 303.38094 * 19 4 2 22 22 C 1.50701 * 109.46910 * 183.38003 * 19 4 2 23 23 C 1.38232 * 119.99736 * 84.73377 * 22 19 4 24 24 C 1.38235 * 120.00123 * 179.81197 * 23 22 19 25 25 C 1.38241 * 119.99557 * 0.39050 * 24 23 22 26 26 C 1.38235 * 120.00234 * 359.85971 * 25 24 23 27 27 C 1.38230 * 119.99963 * 265.00110 * 22 19 4 28 28 H 1.08998 * 109.47719 * 292.99409 * 1 2 3 29 29 H 1.09001 * 109.47032 * 52.99613 * 1 2 3 30 30 H 1.09005 * 109.47103 * 172.99001 * 1 2 3 31 31 H 1.08995 * 109.47266 * 239.99584 * 2 1 3 32 32 H 1.09005 * 109.46403 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46965 * 299.99144 * 3 2 1 34 34 H 1.08995 * 109.47540 * 59.99752 * 3 2 1 35 35 H 0.96996 * 120.00549 * 94.99828 * 6 4 2 36 36 H 1.09006 * 109.47015 * 300.00478 * 9 7 6 37 37 H 1.09003 * 109.47061 * 60.00065 * 9 7 6 38 38 H 0.97004 * 120.00496 * 179.97438 * 14 13 11 39 39 H 0.96696 * 114.00604 * 300.00259 * 21 19 4 40 40 H 1.08000 * 120.00460 * 359.97438 * 23 22 19 41 41 H 1.07996 * 120.00599 * 180.22665 * 24 23 22 42 42 H 1.08004 * 119.99847 * 179.83651 * 25 24 23 43 43 H 1.07993 * 119.99949 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00422 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6486 -0.2276 2.1389 6 7 1.5899 -2.1151 1.2265 7 6 0.3686 -2.4367 1.6970 8 8 -0.3580 -1.5721 2.1390 9 6 -0.0946 -3.8706 1.6729 10 16 -1.7631 -3.9774 2.3662 11 6 -2.0450 -5.7106 2.2197 12 1 -1.2821 -6.3480 1.7976 13 6 -3.2475 -6.2567 2.6467 14 7 -4.1775 -5.4798 3.1606 15 14 -3.5460 -8.0942 2.4920 16 1 -2.3535 -8.7402 1.8873 17 1 -3.7915 -8.6708 3.8383 18 1 -4.7301 -8.3322 1.6281 19 6 3.5691 -0.6793 1.2739 20 1 3.9031 0.3554 1.3515 21 8 4.0808 -1.2560 0.0708 22 6 4.0741 -1.4604 2.4597 23 6 4.2399 -2.8295 2.3656 24 6 4.7067 -3.5455 3.4520 25 6 5.0001 -2.8933 4.6351 26 6 4.8293 -1.5249 4.7308 27 6 4.3661 -0.8085 3.6431 28 1 -0.3634 0.4014 0.9460 29 1 -0.3633 0.6185 -0.8207 30 1 -0.3633 -1.0200 -0.1254 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.1709 -2.8066 0.8727 36 1 -0.1050 -4.2318 0.6445 37 1 0.5855 -4.4821 2.2659 38 1 -5.0180 -5.8613 3.4587 39 1 3.8228 -2.1781 -0.0642 40 1 4.0072 -3.3395 1.4425 41 1 4.8398 -4.6146 3.3774 42 1 5.3623 -3.4531 5.4848 43 1 5.0581 -1.0156 5.6552 44 1 4.2329 0.2607 3.7179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790393669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:21 Heat of formation + Delta-G solvation = -95.070929 kcal Electronic energy + Delta-G solvation = -25509.965926 eV Core-core repulsion = 21938.075868 eV Total energy + Delta-G solvation = -3571.890059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63098 -40.09019 -38.47567 -36.22104 -34.59518 -34.47549 -32.61823 -31.73949 -30.87038 -28.87125 -27.77536 -27.44804 -24.82278 -23.57560 -22.07751 -21.89559 -20.99402 -19.89899 -18.70649 -17.94649 -17.73103 -16.88579 -16.85020 -16.59129 -16.33889 -16.09553 -15.89897 -15.19386 -14.91581 -14.81588 -14.73426 -14.49907 -14.25527 -13.81918 -13.55625 -13.46683 -13.41383 -13.15939 -12.95600 -12.90131 -12.80300 -12.62693 -12.45295 -12.26525 -11.95967 -11.78955 -11.70004 -11.54092 -11.16001 -11.12362 -10.82163 -10.26172 -10.04244 -9.80288 -9.63202 -8.65067 -8.35009 -6.12029 0.38993 0.49298 1.27147 1.40514 1.46899 1.57666 1.67893 2.23065 2.28614 2.81307 2.99456 3.30519 3.39211 3.46561 3.75092 3.90869 3.97028 4.05557 4.09101 4.12978 4.27335 4.30491 4.37104 4.40209 4.50009 4.58823 4.63536 4.77669 4.83210 4.85236 4.98843 5.04624 5.09665 5.12705 5.23775 5.35645 5.41866 5.48081 5.53506 5.54766 5.61952 5.63681 6.09031 6.19688 6.46248 6.58849 7.06811 7.28660 8.74340 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.003689 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.385304 B = 7587.778450 C = 8996.238880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.129 3.871 5 H 0.076 0.924 6 N -0.707 5.707 7 C 0.539 3.461 8 O -0.549 6.549 9 C -0.131 4.131 10 S -0.145 6.145 11 C -0.546 4.546 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.911 5.911 15 Si 0.996 3.004 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.156 3.844 20 H 0.136 0.864 21 O -0.549 6.549 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.124 4.124 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.406 0.594 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.271 0.729 39 H 0.380 0.620 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.428 8.297 -4.413 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.201 4.201 4 C 0.024 3.976 5 H 0.094 0.906 6 N -0.362 5.362 7 C 0.325 3.675 8 O -0.426 6.426 9 C -0.282 4.282 10 S 0.082 5.918 11 C -0.694 4.694 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.548 5.548 15 Si 0.818 3.182 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.199 1.199 19 C 0.096 3.904 20 H 0.153 0.847 21 O -0.356 6.356 22 C -0.126 4.126 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.142 4.142 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 21.336 10.346 -3.682 23.996 hybrid contribution -0.006 -2.861 -0.233 2.870 sum 21.331 7.485 -3.915 22.942 Atomic orbital electron populations 1.21810 0.96141 1.00383 1.00998 1.21381 0.94639 0.97491 0.97687 1.21847 1.01818 0.94104 1.02332 1.21764 0.94448 0.82007 0.99408 0.90612 1.45692 1.16308 1.09784 1.64420 1.19849 0.81681 0.89378 0.76601 1.90699 1.54981 1.50688 1.46214 1.23371 1.01986 0.96976 1.05852 1.85546 1.13372 1.11450 1.81405 1.23238 1.05144 0.92947 1.48044 0.90075 1.26086 0.94550 1.04523 0.93816 1.70185 1.06837 1.37805 1.39973 0.84942 0.78694 0.76313 0.78240 1.18027 1.19969 1.19942 1.21111 0.89186 0.98339 0.81730 0.84707 1.86637 1.76505 1.31899 1.40557 1.20600 1.00504 0.94997 0.96517 1.21080 0.99709 0.93458 0.99547 1.21425 0.98922 1.00897 0.93373 1.21497 0.99958 0.95089 0.98462 1.21437 0.99336 0.94723 0.99205 1.21253 0.99145 1.00957 0.92829 0.93942 0.92524 0.95270 0.89786 0.90736 0.91800 0.92793 0.75707 0.87610 0.87824 0.92033 0.76983 0.84719 0.84550 0.84664 0.84432 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 7.64 71.98 0.55 -3.31 16 2 C -0.09 -1.93 2.49 -10.79 -0.03 -1.96 16 3 C -0.14 -2.36 8.79 71.98 0.63 -1.73 16 4 C 0.13 2.75 1.71 45.00 0.08 2.83 16 5 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 6 N -0.71 -16.77 4.20 -442.54 -1.86 -18.63 16 7 C 0.54 19.03 6.36 87.66 0.56 19.59 16 8 O -0.55 -24.04 12.85 -3.01 -0.04 -24.08 16 9 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 10 S -0.14 -7.96 20.57 -56.49 -1.16 -9.12 16 11 C -0.55 -31.01 9.50 67.95 0.65 -30.37 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.85 5.49 84.86 0.47 1.32 16 14 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 15 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.16 2.52 2.59 29.85 0.08 2.60 16 20 H 0.14 1.87 6.49 -2.38 -0.02 1.85 16 21 O -0.55 -8.20 12.36 -148.98 -1.84 -10.04 16 22 C -0.13 -2.30 4.80 -19.87 -0.10 -2.39 16 23 C -0.12 -2.10 8.23 22.27 0.18 -1.91 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 26 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 27 C -0.12 -2.29 9.68 22.27 0.22 -2.07 16 28 H 0.04 1.40 7.20 -2.39 -0.02 1.39 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.03 0.96 6.36 -2.38 -0.02 0.95 16 31 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 32 H 0.07 1.00 6.47 -2.38 -0.02 0.98 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.41 6.98 5.64 -92.71 -0.52 6.46 16 36 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.38 3.87 6.16 -74.06 -0.46 3.42 16 40 H 0.14 1.65 5.64 -2.91 -0.02 1.64 16 41 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 42 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -76.24 365.91 1.85 -74.39 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.04 Total: 26.09 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.39 Total: -28.49 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.57 Total: -74.23 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.88 Total: -34.12 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -76.24 1.85 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.679 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds