Wall clock time and date at job start Tue Mar 31 2020 14:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 C 1.52995 * 109.47526 * 239.99804 * 2 1 3 5 5 H 1.09000 * 109.47425 * 63.16385 * 4 2 1 6 6 N 1.46504 * 109.47428 * 303.16884 * 4 2 1 7 7 C 1.34774 * 120.00068 * 84.99440 * 6 4 2 8 8 O 1.21280 * 119.99927 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99996 * 180.02562 * 7 6 4 10 10 S 1.81004 * 109.47071 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00047 * 180.02562 * 10 9 7 12 12 H 1.08010 * 120.00153 * 0.02562 * 11 10 9 13 13 C 1.38801 * 120.00323 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99701 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00202 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46998 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46786 * 119.99642 * 15 13 11 18 18 H 1.48490 * 109.47077 * 239.99850 * 15 13 11 19 19 C 1.53000 * 109.47501 * 183.16396 * 4 2 1 20 20 H 1.08996 * 109.47391 * 302.27030 * 19 4 2 21 21 O 1.42900 * 109.47097 * 182.26442 * 19 4 2 22 22 C 1.50709 * 109.46723 * 62.26756 * 19 4 2 23 23 C 1.38235 * 119.99568 * 86.69012 * 22 19 4 24 24 C 1.38240 * 119.99630 * 179.80877 * 23 22 19 25 25 C 1.38241 * 119.99765 * 0.39842 * 24 23 22 26 26 C 1.38237 * 119.99911 * 359.85056 * 25 24 23 27 27 C 1.38231 * 119.99792 * 266.96244 * 22 19 4 28 28 H 1.08996 * 109.46734 * 60.00482 * 1 2 3 29 29 H 1.08994 * 109.47147 * 300.00043 * 1 2 3 30 30 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47020 * 119.99892 * 2 1 3 32 32 H 1.09003 * 109.46675 * 54.19136 * 3 2 1 33 33 H 1.08996 * 109.47054 * 174.19280 * 3 2 1 34 34 H 1.08999 * 109.46943 * 294.19769 * 3 2 1 35 35 H 0.97003 * 119.99780 * 265.00318 * 6 4 2 36 36 H 1.08993 * 109.47200 * 299.99905 * 9 7 6 37 37 H 1.09004 * 109.47275 * 59.99991 * 9 7 6 38 38 H 0.97000 * 119.99608 * 179.97438 * 14 13 11 39 39 H 0.96698 * 114.00595 * 299.99743 * 21 19 4 40 40 H 1.07995 * 120.00274 * 359.97438 * 23 22 19 41 41 H 1.07998 * 120.00411 * 180.23105 * 24 23 22 42 42 H 1.07996 * 119.99955 * 179.83831 * 25 24 23 43 43 H 1.07999 * 119.99597 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.99997 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 1 1.7239 -0.1758 -2.1383 6 7 1.4905 -2.0787 -1.2880 7 6 0.2706 -2.2970 -1.8177 8 8 -0.3720 -1.3696 -2.2627 9 6 -0.2950 -3.6932 -1.8571 10 16 -1.9350 -3.6585 -2.6223 11 6 -2.3474 -5.3695 -2.5398 12 1 -1.6520 -6.0723 -2.1048 13 6 -3.5659 -5.8144 -3.0337 14 7 -4.4136 -4.9579 -3.5633 15 14 -4.0028 -7.6285 -2.9468 16 1 -2.8882 -8.3762 -2.3114 17 1 -5.2383 -7.8020 -2.1414 18 1 -4.2291 -8.1494 -4.3188 19 6 3.5680 -0.7906 -1.2100 20 1 3.9758 0.2178 -1.1405 21 8 4.0471 -1.4172 -2.4015 22 6 4.0038 -1.5924 -0.0106 23 6 4.1091 -2.9678 -0.1000 24 6 4.5127 -3.7029 0.9990 25 6 4.8030 -3.0633 2.1896 26 6 4.6927 -1.6883 2.2804 27 6 4.2928 -0.9529 1.1803 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8901 32 1 1.5943 1.9854 0.8335 33 1 3.1251 1.4442 0.1040 34 1 1.7641 1.9254 -0.9374 35 1 2.0046 -2.8205 -0.9323 36 1 0.3642 -4.3359 -2.4406 37 1 -0.3755 -4.0814 -0.8418 38 1 -5.2650 -5.2688 -3.9088 39 1 3.7238 -2.3196 -2.5287 40 1 3.8787 -3.4678 -1.0290 41 1 4.5985 -4.7772 0.9282 42 1 5.1157 -3.6378 3.0490 43 1 4.9191 -1.1887 3.2107 44 1 4.2067 0.1213 1.2512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790393670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:24 Heat of formation + Delta-G solvation = -70.967213 kcal Electronic energy + Delta-G solvation = -25569.158199 eV Core-core repulsion = 21998.313356 eV Total energy + Delta-G solvation = -3570.844843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82853 -39.07611 -37.35470 -35.67801 -33.26007 -32.43914 -31.72665 -31.13378 -29.52504 -27.88787 -26.72619 -25.48846 -23.84040 -22.96425 -21.64497 -20.54381 -19.94992 -18.13655 -17.72062 -16.67665 -16.58098 -16.06207 -15.77803 -15.42454 -15.12603 -14.81631 -14.51956 -14.22654 -14.04685 -13.62929 -13.42186 -13.33169 -13.02720 -12.80283 -12.67253 -12.50243 -12.26800 -12.13825 -11.93845 -11.73218 -11.38934 -11.20396 -11.08237 -11.02542 -10.83146 -10.78075 -10.70489 -10.23352 -9.81055 -9.38366 -9.20568 -9.10821 -9.07879 -8.77648 -8.24428 -6.50760 -6.23025 -3.93265 1.00081 1.07619 3.00042 3.07167 3.20616 3.27118 3.31364 3.44174 3.68534 4.08522 4.19199 4.26806 4.47763 4.56228 4.66877 4.78027 4.85794 4.97768 5.06301 5.12430 5.13702 5.17260 5.21056 5.35229 5.52093 5.58816 5.64007 5.69252 5.70514 5.83817 5.86066 5.90476 5.96460 6.10097 6.11418 6.14158 6.21072 6.22069 6.32786 6.58941 6.65918 6.68031 7.27613 7.58623 7.65886 8.34115 8.60370 9.22654 10.84406 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.003321 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.864613 B = 8428.857185 C = 9349.315749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.149 4.149 4 C 0.125 3.875 5 H 0.102 0.898 6 N -0.738 5.738 7 C 0.534 3.466 8 O -0.507 6.507 9 C -0.155 4.155 10 S -0.057 6.057 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.138 3.862 20 H 0.122 0.878 21 O -0.549 6.549 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.108 4.108 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.375 0.625 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.329 7.503 11.337 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.207 4.207 4 C 0.019 3.981 5 H 0.120 0.880 6 N -0.394 5.394 7 C 0.320 3.680 8 O -0.381 6.381 9 C -0.306 4.306 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.079 3.921 20 H 0.139 0.861 21 O -0.355 6.355 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.139 4.139 26 C -0.134 4.134 27 C -0.126 4.126 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.369 9.646 10.411 24.013 hybrid contribution 0.374 -3.229 0.992 3.398 sum 19.743 6.418 11.403 23.686 Atomic orbital electron populations 1.21872 0.93544 1.02670 1.01626 1.21552 0.97544 0.95839 0.97705 1.21916 1.00255 0.95925 1.02583 1.21698 0.91742 0.84522 1.00092 0.88020 1.46217 1.19577 1.09142 1.64487 1.20217 0.80357 0.90933 0.76489 1.90707 1.58230 1.44386 1.44753 1.23550 1.05984 0.95554 1.05491 1.85388 1.08742 1.11743 1.77122 1.22913 1.05898 0.93037 1.46563 0.90935 1.24986 0.95218 0.98817 0.94517 1.70026 1.08629 1.34227 1.37367 0.86127 0.78457 0.82975 0.78006 1.19633 1.20563 1.20551 1.21261 0.92222 0.96740 0.81917 0.86062 1.86620 1.73929 1.33120 1.41832 1.20524 0.99783 0.94550 0.96242 1.20906 1.00838 0.93406 0.98929 1.21153 0.98659 1.00094 0.92944 1.21197 1.00089 0.94770 0.97854 1.21166 0.99406 0.94267 0.98511 1.21005 0.99109 1.00088 0.92436 0.91391 0.93672 0.92403 0.90826 0.92230 0.92894 0.92096 0.77068 0.89386 0.89431 0.92236 0.77627 0.86105 0.85716 0.86016 0.85939 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.69 37.16 0.29 -1.69 16 2 C -0.11 -1.17 2.32 -90.62 -0.21 -1.38 16 3 C -0.15 -1.30 8.73 37.16 0.32 -0.97 16 4 C 0.13 1.46 1.81 -67.93 -0.12 1.34 16 5 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 6 N -0.74 -9.57 4.33 -53.81 -0.23 -9.80 16 7 C 0.53 9.51 6.09 -10.99 -0.07 9.44 16 8 O -0.51 -10.78 12.99 5.56 0.07 -10.70 16 9 C -0.16 -3.06 6.16 36.00 0.22 -2.84 16 10 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 11 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.14 1.34 2.94 -27.88 -0.08 1.25 16 20 H 0.12 1.05 6.45 -51.93 -0.34 0.71 16 21 O -0.55 -5.99 13.11 -35.23 -0.46 -6.45 16 22 C -0.11 -1.00 4.16 -104.62 -0.44 -1.44 16 23 C -0.12 -1.07 7.53 -39.58 -0.30 -1.37 16 24 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.11 -0.89 8.07 -39.59 -0.32 -1.21 16 28 H 0.07 1.08 7.32 -51.93 -0.38 0.70 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.96 5.87 -51.93 -0.30 0.66 16 31 H 0.07 0.79 6.15 -51.93 -0.32 0.47 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.36 5.48 -51.93 -0.28 0.08 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.39 4.31 5.58 -40.82 -0.23 4.08 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.38 3.42 6.88 45.56 0.31 3.73 16 40 H 0.12 0.91 5.96 -52.49 -0.31 0.59 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.84 6.75 -52.49 -0.35 0.49 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -33.78 360.74 -8.91 -42.70 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.52 Total: 7.23 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.70 Total: -15.69 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.50 Total: -35.08 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.39 Total: -17.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.78 -8.91 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.272 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds