Wall clock time and date at job start Tue Mar 31 2020 14:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41599 * 114.00254 * 2 1 4 4 C 1.46496 * 119.99834 * 275.63459 * 3 2 1 5 5 C 1.52999 * 109.47325 * 266.20833 * 4 3 2 6 6 C 1.53007 * 109.46875 * 63.16476 * 5 4 3 7 7 C 1.53005 * 109.46694 * 183.15835 * 5 4 3 8 8 C 1.52996 * 109.47543 * 303.16062 * 5 4 3 9 9 C 1.34779 * 119.99581 * 95.64085 * 3 2 1 10 10 O 1.21612 * 119.99391 * 177.12394 * 9 3 2 11 11 C 1.47427 * 120.00439 * 357.12714 * 9 3 2 12 12 C 1.39672 * 120.21215 * 8.99297 * 11 9 3 13 13 C 1.37808 * 119.93624 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.38507 * 0.02562 * 13 12 11 15 15 C 1.37912 * 120.43394 * 0.02562 * 14 13 12 16 16 C 1.39113 * 120.05186 * 359.97438 * 15 14 13 17 17 S 1.76205 * 120.19114 * 180.02562 * 16 15 14 18 18 C 1.76196 * 99.99835 * 352.38737 * 17 16 15 19 19 H 1.07998 * 120.00173 * 4.80259 * 18 17 16 20 20 C 1.38804 * 119.99704 * 184.80325 * 18 17 16 21 21 N 1.31557 * 120.00381 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47038 * 90.00080 * 22 20 18 24 24 H 1.48497 * 109.47620 * 210.00042 * 22 20 18 25 25 H 1.48501 * 109.47340 * 330.00426 * 22 20 18 26 26 H 1.08997 * 109.46666 * 300.00315 * 1 2 3 27 27 H 1.08998 * 109.46621 * 59.99868 * 1 2 3 28 28 H 1.08992 * 109.47394 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46987 * 26.21603 * 4 3 2 30 30 H 1.09004 * 109.46433 * 146.20964 * 4 3 2 31 31 H 1.09000 * 109.47114 * 59.99321 * 6 5 4 32 32 H 1.08997 * 109.46976 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46490 * 299.99829 * 6 5 4 34 34 H 1.08999 * 109.46899 * 60.00836 * 7 5 4 35 35 H 1.09005 * 109.46472 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.47350 * 300.00212 * 7 5 4 37 37 H 1.09004 * 109.46668 * 65.03140 * 8 5 4 38 38 H 1.08990 * 109.47303 * 185.03335 * 8 5 4 39 39 H 1.09000 * 109.46528 * 305.03596 * 8 5 4 40 40 H 1.07996 * 120.03324 * 0.27877 * 12 11 9 41 41 H 1.07998 * 119.81518 * 179.97438 * 13 12 11 42 42 H 1.07990 * 119.78699 * 180.02562 * 14 13 12 43 43 H 1.08001 * 119.97699 * 180.02562 * 15 14 13 44 44 H 0.96995 * 119.99681 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 2.1892 2.0133 -1.2626 5 6 3.5997 1.7548 -1.7960 6 6 3.7626 0.2654 -2.1062 7 6 3.8190 2.5687 -3.0730 8 6 4.6278 2.1718 -0.7426 9 6 2.3840 1.8624 1.1616 10 8 2.9263 2.9509 1.1570 11 6 2.1411 1.1652 2.4377 12 6 1.6932 -0.1578 2.4416 13 6 1.4675 -0.8039 3.6377 14 6 1.6819 -0.1481 4.8405 15 6 2.1229 1.1585 4.8548 16 6 2.3566 1.8281 3.6580 17 16 2.9208 3.4973 3.6720 18 6 2.7872 3.8509 5.3929 19 1 2.5042 3.0709 6.0841 20 6 3.0456 5.1321 5.8602 21 7 3.3898 6.0825 5.0182 22 14 2.9033 5.5073 7.6846 23 1 4.2137 5.2712 8.3422 24 1 2.5056 6.9261 7.8688 25 1 1.8776 4.6226 8.2934 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.4560 1.6646 -1.9899 30 1 2.0544 3.0819 -1.0945 31 1 3.0301 -0.0316 -2.8567 32 1 4.7673 0.0813 -2.4867 33 1 3.6062 -0.3143 -1.1965 34 1 3.7030 3.6297 -2.8520 35 1 4.8238 2.3841 -3.4533 36 1 3.0866 2.2716 -3.8235 37 1 4.5298 1.5316 0.1342 38 1 5.6317 2.0719 -1.1551 39 1 4.4542 3.2091 -0.4562 40 1 1.5279 -0.6752 1.5082 41 1 1.1209 -1.8267 3.6384 42 1 1.5023 -0.6638 5.7721 43 1 2.2879 1.6621 5.7959 44 1 3.5701 6.9779 5.3448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804583993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:25 Heat of formation + Delta-G solvation = 9.521313 kcal Electronic energy + Delta-G solvation = -26175.139970 eV Core-core repulsion = 22607.785371 eV Total energy + Delta-G solvation = -3567.354599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05807 -37.87164 -37.19506 -36.52511 -32.74195 -32.03552 -30.58298 -30.21251 -27.30156 -27.00994 -26.97211 -25.84485 -25.78572 -22.67879 -21.93016 -20.35043 -18.88302 -18.20946 -17.24596 -16.66487 -16.21840 -16.02769 -15.19205 -14.71566 -14.57963 -14.47038 -14.30098 -13.95405 -13.68899 -13.51896 -13.29237 -13.02506 -12.77122 -12.40724 -12.28726 -11.98950 -11.86757 -11.57998 -11.43449 -11.41630 -11.21714 -11.17496 -11.03292 -10.92119 -10.63705 -10.52799 -10.43238 -10.09731 -9.75650 -9.52230 -9.35039 -8.68571 -8.67665 -8.24426 -8.08231 -6.51506 -6.45295 -4.15726 1.56284 2.07193 2.12013 3.11131 3.13520 3.20026 3.40571 3.44021 4.06441 4.27223 4.52434 4.85016 4.89413 4.96172 5.05032 5.16674 5.17592 5.27187 5.38595 5.43339 5.56329 5.60045 5.62515 5.66434 5.75098 5.78140 5.87487 5.92492 6.00582 6.05727 6.17109 6.24402 6.28742 6.32739 6.46194 6.50188 6.70990 6.74650 6.80150 6.97465 7.06191 7.20424 7.48458 7.67680 7.78158 8.17970 8.61816 9.01365 10.58353 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.004445 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.233187 B = 6297.520717 C = 7685.939932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.140 6.140 3 N -0.476 5.476 4 C 0.129 3.871 5 C -0.083 4.083 6 C -0.136 4.136 7 C -0.138 4.138 8 C -0.137 4.137 9 C 0.566 3.434 10 O -0.486 6.486 11 C -0.181 4.181 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.160 4.160 16 C -0.053 4.053 17 S 0.171 5.829 18 C -0.592 4.592 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.859 5.859 22 Si 0.919 3.081 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.154 0.846 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -11.485 -12.458 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.143 6.143 3 N -0.258 5.258 4 C 0.008 3.992 5 C -0.084 4.084 6 C -0.193 4.193 7 C -0.196 4.196 8 C -0.194 4.194 9 C 0.359 3.641 10 O -0.362 6.362 11 C -0.195 4.195 12 C -0.094 4.094 13 C -0.219 4.219 14 C -0.097 4.097 15 C -0.185 4.185 16 C -0.172 4.172 17 S 0.434 5.566 18 C -0.738 4.738 19 H 0.109 0.891 20 C -0.128 4.128 21 N -0.492 5.492 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.193 1.193 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.171 0.829 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.155 0.845 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.324 -9.718 -13.302 16.806 hybrid contribution -0.913 -0.781 2.222 2.526 sum -4.237 -10.499 -11.080 15.841 Atomic orbital electron populations 1.23335 0.82380 1.03505 1.01752 1.90467 1.19792 1.08840 1.95239 1.50097 1.59431 1.09544 1.06699 1.21783 0.96386 0.96943 0.84067 1.20951 0.95534 0.96078 0.95840 1.21821 1.00685 0.95125 1.01665 1.21809 1.01530 1.00055 0.96184 1.21958 0.96659 1.03151 0.97645 1.18433 0.78371 0.84728 0.82532 1.90835 1.41542 1.19694 1.84098 1.19038 1.13691 0.95978 0.90831 1.22399 0.94072 0.93447 0.99512 1.20771 1.08673 0.99771 0.92681 1.21126 0.96669 0.94482 0.97423 1.21379 1.04002 0.94923 0.98200 1.23073 0.97151 1.03009 0.93994 1.84556 1.66916 0.97608 1.07480 1.24002 1.54656 0.99231 0.95928 0.89132 1.25083 0.93281 0.94861 0.99528 1.69975 1.41437 1.02660 1.35099 0.86156 0.78982 0.77965 0.82501 1.19871 1.20490 1.19256 0.92219 0.93101 0.87984 0.90550 0.89058 0.93346 0.93212 0.91767 0.92308 0.92429 0.92955 0.92612 0.93800 0.90878 0.82917 0.87328 0.87275 0.84540 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 10.25 101.05 1.04 0.92 16 2 O -0.14 -1.81 7.18 -11.47 -0.08 -1.89 16 3 N -0.48 -7.18 2.30 -61.38 -0.14 -7.32 16 4 C 0.13 1.65 4.84 -4.04 -0.02 1.63 16 5 C -0.08 -1.01 0.85 -154.50 -0.13 -1.14 16 6 C -0.14 -1.53 8.25 37.16 0.31 -1.22 16 7 C -0.14 -1.39 8.47 37.16 0.31 -1.07 16 8 C -0.14 -2.07 6.91 37.16 0.26 -1.82 16 9 C 0.57 10.93 6.11 -12.52 -0.08 10.85 16 10 O -0.49 -10.69 10.81 5.27 0.06 -10.63 16 11 C -0.18 -3.66 5.89 -104.75 -0.62 -4.28 16 12 C -0.08 -1.27 8.20 -39.20 -0.32 -1.59 16 13 C -0.19 -3.15 10.02 -39.58 -0.40 -3.55 16 14 C -0.07 -1.32 10.03 -39.54 -0.40 -1.72 16 15 C -0.16 -3.41 9.25 -39.38 -0.36 -3.77 16 16 C -0.05 -1.21 6.14 -38.39 -0.24 -1.45 16 17 S 0.17 4.54 18.60 -107.50 -2.00 2.54 16 18 C -0.59 -16.32 9.08 30.94 0.28 -16.04 16 19 H 0.09 2.38 4.85 -52.49 -0.25 2.13 16 20 C 0.08 2.28 5.49 -17.46 -0.10 2.18 16 21 N -0.86 -24.68 13.22 55.49 0.73 -23.95 16 22 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 26 H 0.06 0.69 7.62 -51.93 -0.40 0.30 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.83 7.02 -51.93 -0.36 0.46 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.97 6.36 -51.93 -0.33 0.64 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.25 6.95 -51.93 -0.36 0.89 16 40 H 0.15 2.23 3.84 -55.78 -0.21 2.01 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.14 3.02 4.97 -52.49 -0.26 2.76 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -30.69 359.69 -7.86 -38.54 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.36 Total: 3.64 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -0.46 Total: -22.05 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.59 Total: -31.26 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.03 Total: -12.53 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.00 Total: 2.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.69 -7.86 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804583993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.065 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds