Wall clock time and date at job start Tue Mar 31 2020 14:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41599 * 114.00254 * 2 1 4 4 C 1.46496 * 119.99834 * 275.63459 * 3 2 1 5 5 C 1.52999 * 109.47325 * 266.20833 * 4 3 2 6 6 C 1.53007 * 109.46875 * 63.16476 * 5 4 3 7 7 C 1.53005 * 109.46694 * 183.15835 * 5 4 3 8 8 C 1.52996 * 109.47543 * 303.16062 * 5 4 3 9 9 C 1.34779 * 119.99581 * 95.64085 * 3 2 1 10 10 O 1.21612 * 119.99391 * 177.12394 * 9 3 2 11 11 C 1.47427 * 120.00439 * 357.12714 * 9 3 2 12 12 C 1.39672 * 120.21215 * 8.99297 * 11 9 3 13 13 C 1.37808 * 119.93624 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.38507 * 0.02562 * 13 12 11 15 15 C 1.37912 * 120.43394 * 0.02562 * 14 13 12 16 16 C 1.39113 * 120.05186 * 359.97438 * 15 14 13 17 17 S 1.76205 * 120.19114 * 180.02562 * 16 15 14 18 18 C 1.76196 * 99.99835 * 352.38737 * 17 16 15 19 19 H 1.07998 * 120.00173 * 4.80259 * 18 17 16 20 20 C 1.38804 * 119.99704 * 184.80325 * 18 17 16 21 21 N 1.31557 * 120.00381 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47038 * 90.00080 * 22 20 18 24 24 H 1.48497 * 109.47620 * 210.00042 * 22 20 18 25 25 H 1.48501 * 109.47340 * 330.00426 * 22 20 18 26 26 H 1.08997 * 109.46666 * 300.00315 * 1 2 3 27 27 H 1.08998 * 109.46621 * 59.99868 * 1 2 3 28 28 H 1.08992 * 109.47394 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46987 * 26.21603 * 4 3 2 30 30 H 1.09004 * 109.46433 * 146.20964 * 4 3 2 31 31 H 1.09000 * 109.47114 * 59.99321 * 6 5 4 32 32 H 1.08997 * 109.46976 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46490 * 299.99829 * 6 5 4 34 34 H 1.08999 * 109.46899 * 60.00836 * 7 5 4 35 35 H 1.09005 * 109.46472 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.47350 * 300.00212 * 7 5 4 37 37 H 1.09004 * 109.46668 * 65.03140 * 8 5 4 38 38 H 1.08990 * 109.47303 * 185.03335 * 8 5 4 39 39 H 1.09000 * 109.46528 * 305.03596 * 8 5 4 40 40 H 1.07996 * 120.03324 * 0.27877 * 12 11 9 41 41 H 1.07998 * 119.81518 * 179.97438 * 13 12 11 42 42 H 1.07990 * 119.78699 * 180.02562 * 14 13 12 43 43 H 1.08001 * 119.97699 * 180.02562 * 15 14 13 44 44 H 0.96995 * 119.99681 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 2.1892 2.0133 -1.2626 5 6 3.5997 1.7548 -1.7960 6 6 3.7626 0.2654 -2.1062 7 6 3.8190 2.5687 -3.0730 8 6 4.6278 2.1718 -0.7426 9 6 2.3840 1.8624 1.1616 10 8 2.9263 2.9509 1.1570 11 6 2.1411 1.1652 2.4377 12 6 1.6932 -0.1578 2.4416 13 6 1.4675 -0.8039 3.6377 14 6 1.6819 -0.1481 4.8405 15 6 2.1229 1.1585 4.8548 16 6 2.3566 1.8281 3.6580 17 16 2.9208 3.4973 3.6720 18 6 2.7872 3.8509 5.3929 19 1 2.5042 3.0709 6.0841 20 6 3.0456 5.1321 5.8602 21 7 3.3898 6.0825 5.0182 22 14 2.9033 5.5073 7.6846 23 1 4.2137 5.2712 8.3422 24 1 2.5056 6.9261 7.8688 25 1 1.8776 4.6226 8.2934 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.4560 1.6646 -1.9899 30 1 2.0544 3.0819 -1.0945 31 1 3.0301 -0.0316 -2.8567 32 1 4.7673 0.0813 -2.4867 33 1 3.6062 -0.3143 -1.1965 34 1 3.7030 3.6297 -2.8520 35 1 4.8238 2.3841 -3.4533 36 1 3.0866 2.2716 -3.8235 37 1 4.5298 1.5316 0.1342 38 1 5.6317 2.0719 -1.1551 39 1 4.4542 3.2091 -0.4562 40 1 1.5279 -0.6752 1.5082 41 1 1.1209 -1.8267 3.6384 42 1 1.5023 -0.6638 5.7721 43 1 2.2879 1.6621 5.7959 44 1 3.5701 6.9779 5.3448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804583993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:24 Heat of formation + Delta-G solvation = -7.859381 kcal Electronic energy + Delta-G solvation = -26175.893653 eV Core-core repulsion = 22607.785371 eV Total energy + Delta-G solvation = -3568.108282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41494 -39.28925 -38.47385 -37.67291 -34.76595 -33.25951 -32.09161 -31.76180 -28.28143 -28.10255 -27.90313 -27.83244 -26.93856 -24.12127 -23.43905 -21.76237 -20.05974 -19.81508 -18.81450 -18.06321 -17.49445 -17.23571 -17.05539 -16.23084 -15.97469 -15.58569 -15.49164 -15.20339 -15.14068 -14.85391 -14.72440 -14.38420 -14.22546 -13.56295 -13.41122 -13.29825 -13.10351 -12.99259 -12.87085 -12.81079 -12.55414 -12.46812 -12.39640 -12.10090 -12.08067 -11.68990 -11.64106 -11.52703 -11.41307 -11.37619 -10.77206 -10.38880 -10.00712 -9.87484 -9.70891 -8.45741 -8.45130 -6.23982 0.03799 0.57478 0.92144 1.26588 1.35785 1.44414 1.64352 1.93047 2.21084 2.87238 3.02551 3.07826 3.25709 3.84095 3.89036 4.03627 4.10648 4.19505 4.29710 4.44577 4.48448 4.53610 4.56021 4.64322 4.70541 4.77744 4.81597 4.84844 4.88206 4.89303 4.97806 5.08539 5.14243 5.19295 5.24557 5.33442 5.41337 5.46717 5.50565 5.53678 5.57132 5.62819 5.70262 6.11664 6.20327 6.52040 6.96013 7.19464 8.60241 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.004445 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.233187 B = 6297.520717 C = 7685.939932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 O -0.139 6.139 3 N -0.467 5.467 4 C 0.126 3.874 5 C -0.079 4.079 6 C -0.128 4.128 7 C -0.133 4.133 8 C -0.130 4.130 9 C 0.559 3.441 10 O -0.523 6.523 11 C -0.186 4.186 12 C -0.072 4.072 13 C -0.167 4.167 14 C -0.069 4.069 15 C -0.181 4.181 16 C -0.070 4.070 17 S 0.064 5.936 18 C -0.601 4.601 19 H 0.094 0.906 20 C 0.025 3.975 21 N -0.904 5.904 22 Si 0.992 3.008 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.259 1.259 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.185 0.815 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 -15.739 -13.670 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 O -0.142 6.142 3 N -0.246 5.246 4 C 0.006 3.994 5 C -0.080 4.080 6 C -0.186 4.186 7 C -0.191 4.191 8 C -0.187 4.187 9 C 0.351 3.649 10 O -0.401 6.401 11 C -0.199 4.199 12 C -0.091 4.091 13 C -0.190 4.190 14 C -0.090 4.090 15 C -0.206 4.206 16 C -0.188 4.188 17 S 0.322 5.678 18 C -0.747 4.747 19 H 0.111 0.889 20 C -0.180 4.180 21 N -0.539 5.539 22 Si 0.813 3.187 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.183 1.183 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.201 0.799 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.136 0.864 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.333 -14.081 -14.564 20.948 hybrid contribution -0.439 0.146 2.403 2.447 sum -5.772 -13.935 -12.160 19.375 Atomic orbital electron populations 1.23652 0.80197 1.06047 1.01776 1.90401 1.21877 1.06833 1.95122 1.49830 1.58509 1.10200 1.06089 1.21988 0.97956 0.95912 0.83542 1.20940 0.93821 0.97558 0.95680 1.21750 1.01925 0.93394 1.01488 1.21771 1.02823 0.99087 0.95400 1.21858 0.98608 1.00572 0.97700 1.18454 0.78342 0.84452 0.83626 1.90836 1.43056 1.21306 1.84902 1.19487 1.12569 0.97362 0.90494 1.22858 0.92779 0.91778 1.01658 1.21419 1.04775 1.01545 0.91270 1.21553 0.94697 0.92720 1.00023 1.21414 1.05506 0.96787 0.96872 1.22997 0.98945 1.00823 0.96017 1.84710 1.72107 1.02487 1.08464 1.24224 1.54765 0.99741 0.96015 0.88871 1.26118 0.92898 0.94506 1.04500 1.70125 1.43422 1.03071 1.37310 0.85052 0.79292 0.78001 0.76321 1.19079 1.19727 1.18284 0.94017 0.91404 0.83959 0.86831 0.91014 0.90922 0.92559 0.93490 0.93275 0.91696 0.90386 0.95599 0.92737 0.93995 0.79897 0.82123 0.83489 0.86360 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.31 10.25 113.37 1.16 0.85 16 2 O -0.14 -3.12 7.18 -38.78 -0.28 -3.40 16 3 N -0.47 -13.67 2.30 -466.36 -1.07 -14.75 16 4 C 0.13 3.08 4.84 86.38 0.42 3.50 16 5 C -0.08 -1.84 0.85 -52.18 -0.04 -1.88 16 6 C -0.13 -2.53 8.25 71.98 0.59 -1.93 16 7 C -0.13 -2.43 8.47 71.98 0.61 -1.82 16 8 C -0.13 -4.14 6.91 71.98 0.50 -3.64 16 9 C 0.56 22.39 6.11 86.66 0.53 22.92 16 10 O -0.52 -25.03 10.81 -4.07 -0.04 -25.08 16 11 C -0.19 -7.61 5.89 -19.95 -0.12 -7.73 16 12 C -0.07 -2.21 8.20 22.51 0.18 -2.03 16 13 C -0.17 -4.58 10.02 22.27 0.22 -4.36 16 14 C -0.07 -2.22 10.03 22.29 0.22 -2.00 16 15 C -0.18 -7.80 9.25 22.40 0.21 -7.59 16 16 C -0.07 -3.38 6.14 23.04 0.14 -3.23 16 17 S 0.06 3.72 18.60 -56.49 -1.05 2.67 16 18 C -0.60 -35.44 9.08 67.96 0.62 -34.83 16 19 H 0.09 5.21 4.85 -2.91 -0.01 5.20 16 20 C 0.03 1.47 5.49 84.87 0.47 1.94 16 21 N -0.90 -55.57 13.22 21.65 0.29 -55.28 16 22 Si 0.99 44.30 29.55 68.60 2.03 46.32 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H 0.04 0.84 7.62 -2.39 -0.02 0.82 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 2.07 7.58 -2.38 -0.02 2.06 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.09 7.02 -2.38 -0.02 1.07 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.02 0.94 6.36 -2.38 -0.02 0.93 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 40 H 0.19 4.51 3.84 -55.09 -0.21 4.30 16 41 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.15 3.64 8.06 -2.92 -0.02 3.62 16 43 H 0.12 5.48 4.97 -2.91 -0.01 5.46 16 44 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -76.28 359.69 6.38 -69.89 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.80 Total: 21.44 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 5.71 Total: -41.83 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -0.79 Total: -70.03 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.32 Total: -28.47 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.05 Total: 2.67 kcal Total: -76.28 6.38 -69.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804583993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.035 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds