Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47011 * 179.97438 * 3 2 1 5 5 C 1.38628 * 119.81922 * 90.00057 * 4 3 2 6 6 C 1.37953 * 120.43269 * 179.97438 * 5 4 3 7 7 C 1.38959 * 120.07358 * 359.97438 * 6 5 4 8 8 N 1.38827 * 120.18178 * 179.97438 * 7 6 5 9 9 C 1.40409 * 119.63714 * 0.02562 * 7 6 5 10 10 C 1.47290 * 120.21182 * 180.02562 * 9 7 6 11 11 O 1.21519 * 120.00088 * 354.39120 * 10 9 7 12 12 O 1.34766 * 119.99920 * 174.38913 * 10 9 7 13 13 C 1.45202 * 117.00378 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47381 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47180 * 179.97438 * 14 13 12 16 16 S 1.80995 * 109.47184 * 180.02562 * 15 14 13 17 17 C 1.76207 * 99.99985 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99590 * 359.97438 * 17 16 15 19 19 C 1.38794 * 119.99911 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00337 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00031 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47500 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.47168 * 209.99944 * 21 19 17 24 24 H 1.48501 * 109.46993 * 329.99736 * 21 19 17 25 25 C 1.37726 * 119.81738 * 270.25925 * 4 3 2 26 26 H 1.09004 * 109.46953 * 60.00184 * 1 2 3 27 27 H 1.09005 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47386 * 300.00459 * 1 2 3 29 29 H 1.09002 * 109.47285 * 239.99941 * 2 1 3 30 30 H 1.09002 * 109.47444 * 119.99976 * 2 1 3 31 31 H 1.08997 * 109.46581 * 59.99932 * 3 2 1 32 32 H 1.09000 * 109.46543 * 299.99633 * 3 2 1 33 33 H 1.07995 * 119.78223 * 359.95331 * 5 4 3 34 34 H 1.08004 * 119.96318 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99986 * 185.65830 * 8 7 6 36 36 H 0.96996 * 120.00309 * 5.66175 * 8 7 6 37 37 H 1.09005 * 109.46800 * 299.99816 * 13 12 10 38 38 H 1.09003 * 109.47036 * 59.99701 * 13 12 10 39 39 H 1.08996 * 109.47240 * 300.00038 * 14 13 12 40 40 H 1.09003 * 109.47147 * 59.99932 * 14 13 12 41 41 H 1.08996 * 109.47385 * 300.00341 * 15 14 13 42 42 H 1.09003 * 109.46816 * 60.00122 * 15 14 13 43 43 H 0.97006 * 120.00457 * 180.02562 * 20 19 17 44 44 H 1.07996 * 120.04011 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2369 1.4423 -1.2018 6 6 5.6163 1.4427 -1.2160 7 6 6.3250 1.4440 -0.0207 8 7 7.7132 1.4439 -0.0324 9 6 5.6293 1.4442 1.1989 10 6 6.3677 1.4460 2.4734 11 8 7.5787 1.3445 2.4741 12 8 5.7004 1.5603 3.6386 13 6 6.4927 1.5553 4.8554 14 6 5.5683 1.6940 6.0666 15 6 6.4032 1.6882 7.3487 16 16 5.3096 1.8515 8.7816 17 6 6.4998 1.8174 10.0804 18 1 7.5498 1.7177 9.8481 19 6 6.0880 1.9188 11.4020 20 7 4.8083 2.0409 11.6851 21 14 7.3498 1.8834 12.7789 22 1 7.8005 3.2674 13.0731 23 1 6.7377 1.2928 13.9962 24 1 8.5144 1.0617 12.3620 25 6 4.2313 1.4372 1.1958 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8898 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6908 1.4414 -2.1335 34 1 6.1461 1.4422 -2.1572 35 1 8.2052 1.3619 0.7996 36 1 8.1912 1.5259 -0.8724 37 1 7.0455 0.6184 4.9251 38 1 7.1935 2.3901 4.8361 39 1 5.0159 2.6310 5.9966 40 1 4.8673 0.8596 6.0861 41 1 6.9553 0.7510 7.4185 42 1 7.1045 2.5224 7.3294 43 1 4.5205 2.1121 12.6087 44 1 3.6886 1.4327 2.1295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805403629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = -93.095500 kcal Electronic energy + Delta-G solvation = -23495.369504 eV Core-core repulsion = 19923.565107 eV Total energy + Delta-G solvation = -3571.804398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83570 -39.29404 -36.99164 -35.81857 -33.91540 -33.43625 -32.44771 -31.57002 -29.90791 -26.74240 -25.93727 -25.49914 -24.20224 -22.48752 -21.78468 -21.31558 -20.45442 -17.95380 -17.45164 -17.31522 -16.97333 -16.66747 -16.57473 -15.30309 -14.90105 -14.81951 -14.72949 -14.42738 -14.13290 -14.03003 -13.86824 -13.33432 -13.30496 -12.95524 -12.69220 -12.61327 -12.26067 -12.10351 -11.85780 -11.60577 -11.36967 -11.23057 -11.14735 -10.99768 -10.91194 -10.88679 -10.68550 -10.59018 -10.41105 -10.28791 -9.63600 -9.30669 -9.07935 -8.35872 -7.78670 -6.56615 -6.24978 -3.96008 0.60019 1.30079 2.42386 2.59557 3.21170 3.22169 3.28642 3.54817 3.58309 3.63909 4.19737 4.43662 4.52056 4.63501 4.76714 4.87500 4.98267 5.10397 5.11897 5.13079 5.13460 5.19551 5.29704 5.38876 5.42331 5.49415 5.55792 5.60976 5.69618 5.77655 5.78542 5.82204 5.90427 5.94876 6.01465 6.07438 6.15282 6.34857 6.42146 6.45118 6.57431 6.67153 7.16104 7.57643 7.58836 7.77681 8.34613 9.21376 10.83162 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002120 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.892525 B =13207.196270 C =14831.442353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.072 4.072 4 C -0.161 4.161 5 C -0.028 4.028 6 C -0.216 4.216 7 C 0.282 3.718 8 N -0.857 5.857 9 C -0.217 4.217 10 C 0.522 3.478 11 O -0.529 6.529 12 O -0.347 6.347 13 C 0.073 3.927 14 C -0.098 4.098 15 C -0.114 4.114 16 S -0.124 6.124 17 C -0.518 4.518 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.869 5.869 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.005 4.005 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.417 0.583 36 H 0.395 0.605 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.268 0.732 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -1.942 -29.116 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.109 4.109 4 C -0.164 4.164 5 C -0.047 4.047 6 C -0.239 4.239 7 C 0.170 3.830 8 N -0.403 5.403 9 C -0.223 4.223 10 C 0.370 3.630 11 O -0.421 6.421 12 O -0.263 6.263 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.263 4.263 16 S 0.105 5.895 17 C -0.666 4.666 18 H 0.091 0.909 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.024 4.024 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.259 0.741 36 H 0.222 0.778 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.665 -1.862 -28.759 29.052 hybrid contribution 2.723 -0.136 0.856 2.857 sum -0.943 -1.997 -27.904 27.991 Atomic orbital electron populations 1.21795 0.95819 1.01669 1.01845 1.21555 0.95569 0.96388 1.02359 1.20511 0.90394 0.97159 1.02850 1.19575 0.95988 1.08267 0.92521 1.21000 0.93264 0.92795 0.97690 1.20558 0.94478 1.13002 0.95840 1.17716 0.84596 0.88514 0.92175 1.43463 1.03446 1.79422 1.14005 1.18494 0.93818 1.21405 0.88625 1.20969 0.85565 0.71969 0.84507 1.90453 1.15577 1.48912 1.87122 1.86538 1.41797 1.83047 1.14935 1.23287 0.93944 1.02574 0.80350 1.21285 0.97925 1.04248 0.90170 1.23176 1.01980 1.03326 0.97788 1.84655 1.12929 1.95989 0.95971 1.22693 0.93984 1.58065 0.91873 0.90854 1.25017 0.96001 0.94545 0.98224 1.70016 1.14064 1.46661 1.19735 0.86147 0.80514 0.78474 0.80288 1.20243 1.20727 1.19672 1.21162 0.91720 0.90873 0.98652 0.92874 0.92786 0.92515 0.92097 0.91715 0.90930 0.91282 0.85667 0.85422 0.74123 0.77783 0.91110 0.91128 0.90307 0.90314 0.91748 0.91753 0.92244 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.07 -0.50 5.33 -27.88 -0.15 -0.65 16 4 C -0.16 -1.38 5.13 -104.67 -0.54 -1.92 16 5 C -0.03 -0.22 9.68 -39.54 -0.38 -0.60 16 6 C -0.22 -1.75 9.88 -39.42 -0.39 -2.14 16 7 C 0.28 2.92 6.76 -83.61 -0.57 2.35 16 8 N -0.86 -7.98 8.93 32.55 0.29 -7.68 16 9 C -0.22 -2.59 5.89 -104.82 -0.62 -3.21 16 10 C 0.52 7.34 7.87 34.41 0.27 7.61 16 11 O -0.53 -8.03 13.44 -19.28 -0.26 -8.29 16 12 O -0.35 -5.01 9.49 -40.67 -0.39 -5.40 16 13 C 0.07 1.08 5.48 37.16 0.20 1.29 16 14 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 15 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 16 S -0.12 -3.21 21.44 -107.50 -2.30 -5.52 16 17 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 18 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 25 C -0.01 -0.06 9.25 -39.18 -0.36 -0.42 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.42 4.64 5.34 -40.94 -0.22 4.42 16 36 H 0.39 2.45 8.84 -40.82 -0.36 2.09 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.14 1.38 7.62 -52.49 -0.40 0.98 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -32.01 384.49 -10.07 -42.09 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.86 Total: 3.31 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.06 Total: -15.65 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 1.02 Total: -32.84 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.64 Total: -13.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.30 Total: -5.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.01 -10.07 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805403629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.008 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds