Wall clock time and date at job start Tue Mar 31 2020 13:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47011 * 179.97438 * 3 2 1 5 5 C 1.38628 * 119.81922 * 90.00057 * 4 3 2 6 6 C 1.37953 * 120.43269 * 179.97438 * 5 4 3 7 7 C 1.38959 * 120.07358 * 359.97438 * 6 5 4 8 8 N 1.38827 * 120.18178 * 179.97438 * 7 6 5 9 9 C 1.40409 * 119.63714 * 0.02562 * 7 6 5 10 10 C 1.47290 * 120.21182 * 180.02562 * 9 7 6 11 11 O 1.21519 * 120.00088 * 354.39120 * 10 9 7 12 12 O 1.34766 * 119.99920 * 174.38913 * 10 9 7 13 13 C 1.45202 * 117.00378 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47381 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47180 * 179.97438 * 14 13 12 16 16 S 1.80995 * 109.47184 * 180.02562 * 15 14 13 17 17 C 1.76207 * 99.99985 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99590 * 359.97438 * 17 16 15 19 19 C 1.38794 * 119.99911 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00337 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00031 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47500 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.47168 * 209.99944 * 21 19 17 24 24 H 1.48501 * 109.46993 * 329.99736 * 21 19 17 25 25 C 1.37726 * 119.81738 * 270.25925 * 4 3 2 26 26 H 1.09004 * 109.46953 * 60.00184 * 1 2 3 27 27 H 1.09005 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47386 * 300.00459 * 1 2 3 29 29 H 1.09002 * 109.47285 * 239.99941 * 2 1 3 30 30 H 1.09002 * 109.47444 * 119.99976 * 2 1 3 31 31 H 1.08997 * 109.46581 * 59.99932 * 3 2 1 32 32 H 1.09000 * 109.46543 * 299.99633 * 3 2 1 33 33 H 1.07995 * 119.78223 * 359.95331 * 5 4 3 34 34 H 1.08004 * 119.96318 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99986 * 185.65830 * 8 7 6 36 36 H 0.96996 * 120.00309 * 5.66175 * 8 7 6 37 37 H 1.09005 * 109.46800 * 299.99816 * 13 12 10 38 38 H 1.09003 * 109.47036 * 59.99701 * 13 12 10 39 39 H 1.08996 * 109.47240 * 300.00038 * 14 13 12 40 40 H 1.09003 * 109.47147 * 59.99932 * 14 13 12 41 41 H 1.08996 * 109.47385 * 300.00341 * 15 14 13 42 42 H 1.09003 * 109.46816 * 60.00122 * 15 14 13 43 43 H 0.97006 * 120.00457 * 180.02562 * 20 19 17 44 44 H 1.07996 * 120.04011 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2369 1.4423 -1.2018 6 6 5.6163 1.4427 -1.2160 7 6 6.3250 1.4440 -0.0207 8 7 7.7132 1.4439 -0.0324 9 6 5.6293 1.4442 1.1989 10 6 6.3677 1.4460 2.4734 11 8 7.5787 1.3445 2.4741 12 8 5.7004 1.5603 3.6386 13 6 6.4927 1.5553 4.8554 14 6 5.5683 1.6940 6.0666 15 6 6.4032 1.6882 7.3487 16 16 5.3096 1.8515 8.7816 17 6 6.4998 1.8174 10.0804 18 1 7.5498 1.7177 9.8481 19 6 6.0880 1.9188 11.4020 20 7 4.8083 2.0409 11.6851 21 14 7.3498 1.8834 12.7789 22 1 7.8005 3.2674 13.0731 23 1 6.7377 1.2928 13.9962 24 1 8.5144 1.0617 12.3620 25 6 4.2313 1.4372 1.1958 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8898 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6908 1.4414 -2.1335 34 1 6.1461 1.4422 -2.1572 35 1 8.2052 1.3619 0.7996 36 1 8.1912 1.5259 -0.8724 37 1 7.0455 0.6184 4.9251 38 1 7.1935 2.3901 4.8361 39 1 5.0159 2.6310 5.9966 40 1 4.8673 0.8596 6.0861 41 1 6.9553 0.7510 7.4185 42 1 7.1045 2.5224 7.3294 43 1 4.5205 2.1121 12.6087 44 1 3.6886 1.4327 2.1295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805403629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:55 Heat of formation + Delta-G solvation = -109.769323 kcal Electronic energy + Delta-G solvation = -23496.092536 eV Core-core repulsion = 19923.565107 eV Total energy + Delta-G solvation = -3572.527429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.80560 -40.12255 -38.01337 -36.56177 -35.01001 -34.60632 -34.37078 -32.34445 -30.53987 -28.24624 -27.49708 -26.54781 -25.10615 -23.27478 -22.70824 -22.44057 -21.25051 -19.59928 -18.81708 -18.16163 -17.81006 -17.69440 -17.57446 -16.90864 -16.26255 -16.03695 -15.84110 -15.48558 -15.02343 -14.81626 -14.73607 -14.60477 -14.15497 -14.10081 -13.84195 -13.73888 -13.43485 -13.14836 -12.95749 -12.81938 -12.64070 -12.54861 -12.42579 -12.41215 -12.14454 -11.85728 -11.62518 -11.56117 -11.44043 -11.28518 -11.23002 -11.15957 -10.37759 -10.02814 -8.69510 -8.49673 -8.39035 -6.15836 -0.19927 0.60395 1.26190 1.39045 1.42076 1.48802 1.52098 1.85045 2.25996 2.84222 2.94039 2.95444 3.27240 3.58890 3.81878 3.85903 3.94059 3.95423 4.12330 4.21273 4.30164 4.30823 4.38581 4.42969 4.50334 4.56653 4.65454 4.74052 4.85051 4.98796 5.01060 5.06971 5.08729 5.11555 5.15890 5.28125 5.32298 5.37422 5.38903 5.40757 5.56067 5.75729 5.91351 6.16791 6.41484 6.67590 6.93207 7.03313 8.70348 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002120 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.892525 B =13207.196270 C =14831.442353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.069 4.069 4 C -0.161 4.161 5 C -0.021 4.021 6 C -0.211 4.211 7 C 0.270 3.730 8 N -0.855 5.855 9 C -0.244 4.244 10 C 0.515 3.485 11 O -0.547 6.547 12 O -0.352 6.352 13 C 0.081 3.919 14 C -0.086 4.086 15 C -0.091 4.091 16 S -0.185 6.185 17 C -0.540 4.540 18 H 0.074 0.926 19 C 0.015 3.985 20 N -0.906 5.906 21 Si 0.995 3.005 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.264 1.264 25 C -0.019 4.019 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.272 0.728 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -1.966 -31.245 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.107 4.107 4 C -0.163 4.163 5 C -0.039 4.039 6 C -0.234 4.234 7 C 0.158 3.842 8 N -0.401 5.401 9 C -0.251 4.251 10 C 0.365 3.635 11 O -0.440 6.440 12 O -0.268 6.268 13 C 0.006 3.994 14 C -0.124 4.124 15 C -0.240 4.240 16 S 0.044 5.956 17 C -0.688 4.688 18 H 0.092 0.908 19 C -0.190 4.190 20 N -0.543 5.543 21 Si 0.817 3.183 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.188 1.188 25 C -0.038 4.038 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.249 0.751 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.228 -1.884 -30.924 31.149 hybrid contribution 2.545 -0.136 1.346 2.882 sum -0.683 -2.020 -29.578 29.655 Atomic orbital electron populations 1.21788 0.95277 1.01838 1.02152 1.21530 0.96024 0.96210 1.01943 1.20532 0.89278 0.97332 1.03530 1.19806 0.96856 1.07338 0.92302 1.21402 0.93259 0.90785 0.98490 1.20911 0.94857 1.11612 0.95983 1.17984 0.85032 0.88721 0.92460 1.43435 1.03296 1.79047 1.14351 1.18572 0.94459 1.23930 0.88093 1.21461 0.85651 0.71567 0.84801 1.90442 1.16207 1.50030 1.87319 1.86526 1.41855 1.83359 1.15062 1.23045 0.93304 1.02928 0.80106 1.21098 0.97637 1.04341 0.89325 1.23055 1.01017 1.03630 0.96266 1.84640 1.15801 1.96224 0.98937 1.23047 0.94307 1.58427 0.93014 0.90785 1.26069 0.98223 0.93729 1.00955 1.70145 1.16181 1.47378 1.20566 0.85003 0.77740 0.78925 0.76664 1.19265 1.19855 1.18783 1.21194 0.91317 0.91907 0.99378 0.91776 0.92726 0.93001 0.91439 0.93222 0.91465 0.89412 0.82400 0.82606 0.75137 0.76134 0.90773 0.90776 0.90273 0.90269 0.91332 0.91309 0.91880 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 3 C -0.07 -0.84 5.33 29.85 0.16 -0.68 16 4 C -0.16 -2.48 5.13 -19.89 -0.10 -2.59 16 5 C -0.02 -0.25 9.68 22.30 0.22 -0.03 16 6 C -0.21 -2.83 9.88 22.37 0.22 -2.61 16 7 C 0.27 5.27 6.76 38.74 0.26 5.54 16 8 N -0.86 -15.11 8.93 -50.93 -0.45 -15.56 16 9 C -0.24 -5.80 5.89 -19.99 -0.12 -5.92 16 10 C 0.52 14.71 7.87 70.20 0.55 15.26 16 11 O -0.55 -16.79 13.44 19.77 0.27 -16.53 16 12 O -0.35 -10.30 9.49 -56.77 -0.54 -10.84 16 13 C 0.08 2.39 5.48 71.98 0.39 2.79 16 14 C -0.09 -2.82 5.60 30.59 0.17 -2.65 16 15 C -0.09 -3.65 5.67 71.98 0.41 -3.24 16 16 S -0.18 -9.82 21.44 -56.49 -1.21 -11.03 16 17 C -0.54 -31.25 9.50 67.95 0.65 -30.60 16 18 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 19 C 0.02 0.87 5.49 84.86 0.47 1.34 16 20 N -0.91 -54.72 13.22 21.65 0.29 -54.43 16 21 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 25 C -0.02 -0.40 9.25 22.53 0.21 -0.19 16 26 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.41 9.02 5.34 -94.64 -0.51 8.52 16 36 H 0.41 4.45 8.84 -92.71 -0.82 3.63 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 44 H 0.13 2.74 7.62 -2.91 -0.02 2.72 16 Total: -1.00 -69.79 384.49 4.43 -65.36 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.32 Total: 22.75 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.38 Total: -25.78 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.17 Total: -70.00 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.27 Total: -27.36 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -1.21 Total: -11.03 kcal Total: -69.79 4.43 -65.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805403629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.411 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds