Wall clock time and date at job start Tue Mar 31 2020 13:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47355 * 2 1 4 4 C 1.50700 * 109.47264 * 120.00611 * 2 1 3 5 5 C 1.38001 * 119.96179 * 305.23430 * 4 2 1 6 6 C 1.38591 * 120.43404 * 180.27975 * 5 4 2 7 7 C 1.37763 * 120.35645 * 359.74031 * 6 5 4 8 8 C 1.39757 * 119.92498 * 359.97438 * 7 6 5 9 9 C 1.47294 * 120.20987 * 179.97438 * 8 7 6 10 10 O 1.21529 * 119.99446 * 185.88142 * 9 8 7 11 11 O 1.34759 * 120.00394 * 5.88229 * 9 8 7 12 12 C 1.45203 * 117.00137 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47061 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46849 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.46927 * 180.02562 * 14 13 12 16 16 C 1.76202 * 100.00104 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99517 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00025 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00262 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47414 * 60.00126 * 20 18 16 22 22 H 1.48501 * 109.47417 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47145 * 300.00390 * 20 18 16 24 24 C 1.38921 * 119.97050 * 124.99757 * 4 2 1 25 25 N 1.38830 * 120.17546 * 0.02562 * 24 4 2 26 26 H 1.08997 * 109.46787 * 300.00195 * 1 2 3 27 27 H 1.09004 * 109.46841 * 59.99470 * 1 2 3 28 28 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46782 * 239.99910 * 2 1 3 30 30 H 1.09010 * 109.47099 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47517 * 299.99813 * 3 2 1 32 32 H 1.08995 * 109.47136 * 60.00649 * 3 2 1 33 33 H 1.07997 * 119.78252 * 0.02562 * 5 4 2 34 34 H 1.07996 * 119.81417 * 179.71946 * 6 5 4 35 35 H 1.08005 * 120.03595 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47100 * 299.99451 * 12 11 9 37 37 H 1.08996 * 109.47051 * 60.00147 * 12 11 9 38 38 H 1.09003 * 109.47271 * 299.99793 * 13 12 11 39 39 H 1.08996 * 109.47378 * 59.99967 * 13 12 11 40 40 H 1.08996 * 109.47164 * 299.99263 * 14 13 12 41 41 H 1.08996 * 109.47300 * 59.99745 * 14 13 12 42 42 H 0.96995 * 120.00198 * 180.02562 * 19 18 16 43 43 H 0.97001 * 120.00209 * 204.79878 * 25 24 4 44 44 H 0.97003 * 120.00343 * 24.52487 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6118 -0.3048 2.4805 6 6 2.0721 -0.9475 3.6189 7 6 2.9512 -2.0031 3.5151 8 6 3.3823 -2.4302 2.2561 9 6 4.3226 -3.5577 2.1379 10 8 4.7780 -3.8577 1.0518 11 8 4.6780 -4.2566 3.2339 12 6 5.6081 -5.3550 3.0425 13 6 5.8904 -6.0249 4.3888 14 6 6.8710 -7.1819 4.1872 15 16 7.2043 -7.9748 5.7798 16 6 8.3267 -9.2324 5.2665 17 1 8.6004 -9.3197 4.2255 18 6 8.8589 -10.1107 6.2001 19 7 8.5248 -10.0046 7.4689 20 14 10.0493 -11.4435 5.6561 21 1 11.2424 -10.8170 5.0321 22 1 10.4691 -12.2435 6.8347 23 1 9.3824 -12.3300 4.6688 24 6 2.9145 -1.7764 1.1047 25 7 3.3356 -2.1892 -0.1521 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 0.9227 0.5216 2.5727 34 1 1.7399 -0.6188 4.5925 35 1 3.3063 -2.5005 4.4056 36 1 5.1736 -6.0841 2.3585 37 1 6.5394 -4.9737 2.6237 38 1 6.3247 -5.2961 5.0733 39 1 4.9590 -6.4062 4.8073 40 1 6.4371 -7.9108 3.5027 41 1 7.8023 -6.8001 3.7689 42 1 8.8970 -10.6182 8.1214 43 1 3.6362 -3.1015 -0.2875 44 1 3.3255 -1.5665 -0.8958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805424102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:29 Heat of formation + Delta-G solvation = -85.626951 kcal Electronic energy + Delta-G solvation = -23667.343108 eV Core-core repulsion = 20095.862571 eV Total energy + Delta-G solvation = -3571.480537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87124 -39.53510 -36.75963 -35.72239 -34.60563 -33.46509 -32.44222 -30.68205 -28.82155 -27.54109 -26.66832 -25.49744 -24.47301 -23.03986 -21.42002 -21.31390 -20.12379 -17.92727 -17.52044 -17.28535 -17.05161 -16.63200 -16.47362 -15.28748 -14.94446 -14.81607 -14.59287 -14.42210 -14.29072 -14.09259 -13.91898 -13.41362 -13.02148 -12.83149 -12.69927 -12.44640 -12.35390 -12.32218 -12.08863 -11.55901 -11.33151 -11.27196 -11.12441 -11.10660 -10.96915 -10.92441 -10.79782 -10.67866 -10.31457 -10.26874 -9.63444 -9.13025 -9.06769 -8.35713 -7.88915 -6.56101 -6.24353 -3.95500 0.59414 1.27257 2.45569 2.61225 3.22154 3.23040 3.27628 3.55180 3.57970 3.64804 4.20313 4.26506 4.39121 4.62483 4.79117 4.82629 4.93251 4.99357 5.10530 5.11119 5.14214 5.20836 5.21981 5.32893 5.41497 5.43054 5.46916 5.50759 5.55725 5.70183 5.77484 5.78662 5.83841 5.88561 5.99232 6.14091 6.17878 6.27472 6.41912 6.46001 6.56952 6.68296 7.20189 7.57851 7.58970 7.77239 8.34835 9.21809 10.83736 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.001818 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.629474 B =15397.521903 C =15926.350177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C -0.145 4.145 4 C -0.167 4.167 5 C -0.037 4.037 6 C -0.187 4.187 7 C -0.019 4.019 8 C -0.205 4.205 9 C 0.517 3.483 10 O -0.523 6.523 11 O -0.350 6.350 12 C 0.074 3.926 13 C -0.098 4.098 14 C -0.114 4.114 15 S -0.123 6.123 16 C -0.519 4.519 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.869 5.869 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.281 3.719 25 N -0.860 5.860 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.268 0.732 43 H 0.413 0.587 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 22.988 -13.972 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.171 4.171 5 C -0.056 4.056 6 C -0.207 4.207 7 C -0.038 4.038 8 C -0.211 4.211 9 C 0.365 3.635 10 O -0.415 6.415 11 O -0.266 6.266 12 C -0.001 4.001 13 C -0.136 4.136 14 C -0.263 4.263 15 S 0.105 5.895 16 C -0.668 4.668 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.505 5.505 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.171 3.829 25 N -0.406 5.406 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.250 0.750 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -16.618 22.971 -13.024 31.200 hybrid contribution 1.493 -1.387 -1.906 2.790 sum -15.124 21.584 -14.929 30.290 Atomic orbital electron populations 1.21862 0.94221 1.02095 1.01875 1.19912 0.96065 0.95635 0.95009 1.21887 1.01252 0.95133 1.01964 1.19383 1.01505 1.00475 0.95766 1.20997 0.96075 0.97185 0.91316 1.20895 1.02086 0.98976 0.98748 1.21322 0.92562 0.93754 0.96148 1.18699 1.06471 1.02099 0.93879 1.20957 0.79098 0.81341 0.82153 1.90624 1.54330 1.68289 1.28235 1.86532 1.59785 1.43826 1.36447 1.23264 0.91213 0.85910 0.99687 1.21283 1.00528 0.97038 0.94769 1.23178 1.00134 0.98791 1.04186 1.84648 1.60112 1.38401 1.06329 1.22658 1.30455 1.16979 0.96666 0.90901 1.25011 0.96648 0.97500 0.94565 1.70005 1.42405 1.37004 1.01058 0.86208 0.80500 0.80580 0.78150 1.19917 1.20780 1.19923 1.17434 0.89073 0.91256 0.85112 1.42963 1.73030 1.17150 1.07478 0.92333 0.92485 0.92474 0.90883 0.92586 0.92438 0.92304 0.85709 0.85456 0.84385 0.91195 0.91168 0.90334 0.90328 0.91763 0.91753 0.92190 0.75013 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.95 37.16 0.33 -0.43 16 2 C -0.05 -0.29 2.97 -91.77 -0.27 -0.56 16 3 C -0.15 -0.77 9.06 37.16 0.34 -0.43 16 4 C -0.17 -1.38 4.80 -104.46 -0.50 -1.88 16 5 C -0.04 -0.28 8.74 -39.54 -0.35 -0.62 16 6 C -0.19 -1.54 10.02 -39.62 -0.40 -1.94 16 7 C -0.02 -0.20 9.61 -39.19 -0.38 -0.57 16 8 C -0.21 -2.44 5.89 -104.82 -0.62 -3.06 16 9 C 0.52 7.28 7.86 34.41 0.27 7.55 16 10 O -0.52 -7.99 13.62 -19.29 -0.26 -8.25 16 11 O -0.35 -5.07 9.49 -40.65 -0.39 -5.45 16 12 C 0.07 1.10 5.48 37.16 0.20 1.31 16 13 C -0.10 -1.62 5.60 -26.73 -0.15 -1.77 16 14 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 15 S -0.12 -3.21 21.44 -107.50 -2.30 -5.51 16 16 C -0.52 -14.90 9.50 30.94 0.29 -14.60 16 17 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 18 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 20 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.28 2.90 6.74 -83.61 -0.56 2.34 16 25 N -0.86 -7.99 8.17 32.55 0.27 -7.72 16 26 H 0.06 0.28 7.10 -51.93 -0.37 -0.09 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.42 5.97 -51.93 -0.31 0.11 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.29 7.70 -51.93 -0.40 -0.11 16 33 H 0.13 0.66 7.07 -52.49 -0.37 0.29 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.33 7.62 -52.48 -0.40 0.93 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 41 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.41 4.42 6.15 -40.82 -0.25 4.17 16 44 H 0.40 2.71 7.00 -40.82 -0.29 2.42 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -32.07 377.37 -9.54 -41.61 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.58 Total: 3.11 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.67 Total: -14.81 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 1.00 Total: -32.90 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.65 Total: -13.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.30 Total: -5.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.07 -9.54 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805424102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.015 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds