Wall clock time and date at job start Tue Mar 31 2020 14:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47147 * 2 1 4 4 C 1.53002 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46938 * 304.99963 * 4 3 2 6 6 C 1.50703 * 109.47058 * 65.00015 * 4 3 2 7 7 O 1.20830 * 119.99635 * 119.99523 * 6 4 3 8 8 O 1.34228 * 120.00072 * 300.00046 * 6 4 3 9 9 C 1.45193 * 116.99805 * 179.97438 * 8 6 4 10 10 C 1.53009 * 109.46942 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46874 * 180.02562 * 10 9 8 12 12 S 1.81000 * 109.46645 * 180.02562 * 11 10 9 13 13 C 1.76202 * 99.99831 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99938 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99765 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00293 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99751 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47130 * 60.00319 * 17 15 13 19 19 H 1.48499 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47198 * 300.00463 * 17 15 13 21 21 C 1.50703 * 109.46845 * 184.99801 * 4 3 2 22 22 C 1.38225 * 119.61869 * 274.99900 * 21 4 3 23 23 C 1.38635 * 119.15939 * 179.97438 * 22 21 4 24 24 C 1.38675 * 118.41956 * 0.02562 * 23 22 21 25 25 C 1.38186 * 119.16332 * 0.27967 * 24 23 22 26 26 N 1.31860 * 119.61591 * 94.98255 * 21 4 3 27 27 H 1.08989 * 109.47160 * 60.00328 * 1 2 3 28 28 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46824 * 299.99880 * 1 2 3 30 30 H 1.09002 * 109.47243 * 240.00002 * 2 1 3 31 31 H 1.09004 * 109.47264 * 120.00157 * 2 1 3 32 32 H 1.09002 * 109.47047 * 59.99882 * 3 2 1 33 33 H 1.09004 * 109.47167 * 300.00217 * 3 2 1 34 34 H 1.08998 * 109.47657 * 299.99955 * 9 8 6 35 35 H 1.09002 * 109.47254 * 60.00282 * 9 8 6 36 36 H 1.08998 * 109.47211 * 300.00599 * 10 9 8 37 37 H 1.09002 * 109.46612 * 60.00260 * 10 9 8 38 38 H 1.09002 * 109.47230 * 299.99949 * 11 10 9 39 39 H 1.08992 * 109.47228 * 60.00482 * 11 10 9 40 40 H 0.96999 * 119.99905 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.42054 * 0.02562 * 22 21 4 42 42 H 1.07998 * 120.78847 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.41399 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.61418 * 179.70216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0729 0.8418 -1.2868 7 8 4.7678 1.4961 -2.0277 8 8 3.7488 -0.4199 -1.6104 9 6 4.2680 -0.9326 -2.8656 10 6 3.7971 -2.3752 -3.0611 11 6 4.3447 -2.9157 -4.3836 12 16 3.7870 -4.6220 -4.6151 13 6 4.5399 -4.9820 -6.1670 14 1 5.1340 -4.2309 -6.6661 15 6 4.3702 -6.2314 -6.7474 16 7 3.6465 -7.1470 -6.1388 17 14 5.1690 -6.6133 -8.3923 18 1 6.6423 -6.4707 -8.2721 19 1 4.8369 -8.0042 -8.7927 20 1 4.6624 -5.6684 -9.4198 21 6 4.0722 2.8579 0.1244 22 6 4.2017 3.6385 -1.0090 23 6 4.6641 4.9394 -0.8841 24 6 4.9809 5.4086 0.3819 25 6 4.8318 4.5678 1.4684 26 7 4.3828 3.3376 1.3128 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9041 -0.3167 -3.6880 35 1 5.3575 -0.9059 -2.8461 36 1 4.1612 -2.9909 -2.2386 37 1 2.7075 -2.4022 -3.0804 38 1 3.9808 -2.3001 -5.2062 39 1 5.4341 -2.8887 -4.3638 40 1 3.5276 -8.0200 -6.5447 41 1 3.9451 3.2401 -1.9795 42 1 4.7749 5.5725 -1.7520 43 1 5.3443 6.4167 0.5163 44 1 5.0810 4.9241 2.4570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805553820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:08 Heat of formation + Delta-G solvation = -75.183723 kcal Electronic energy + Delta-G solvation = -24065.467906 eV Core-core repulsion = 20494.440222 eV Total energy + Delta-G solvation = -3571.027685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30879 -40.00714 -36.96438 -36.12721 -33.49520 -32.93390 -32.45739 -32.38388 -29.60730 -26.74479 -25.56541 -25.21997 -23.85583 -23.05940 -21.77432 -21.28549 -20.54978 -17.93830 -17.43445 -17.25311 -17.14852 -16.47598 -16.11686 -15.60810 -15.09447 -14.83498 -14.72334 -14.36848 -14.10407 -14.00543 -13.62966 -13.52175 -13.24931 -12.97402 -12.81683 -12.48697 -12.30730 -12.11506 -11.92791 -11.53620 -11.31350 -11.15384 -11.13107 -11.02521 -10.94525 -10.72319 -10.65464 -10.44091 -10.26415 -10.06461 -9.75424 -9.65091 -9.24079 -9.08296 -8.37858 -6.58044 -6.25972 -3.97206 0.77224 1.02047 2.00028 2.39902 3.20081 3.21844 3.26448 3.47423 3.52446 3.83321 4.18577 4.26663 4.54052 4.55496 4.66006 4.71848 4.81334 4.90257 4.94461 5.07504 5.10751 5.11801 5.15043 5.27088 5.36802 5.38062 5.44096 5.46779 5.52962 5.62648 5.66970 5.74641 5.82798 5.86761 5.93330 5.98113 6.09295 6.12717 6.28704 6.34385 6.42365 6.46183 6.64476 7.57028 7.57491 7.66428 8.33215 9.20265 10.82072 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.002158 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.094782 B =12970.717309 C =13956.178668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C -0.102 4.102 4 C -0.031 4.031 5 H 0.128 0.872 6 C 0.469 3.531 7 O -0.504 6.504 8 O -0.342 6.342 9 C 0.069 3.931 10 C -0.097 4.097 11 C -0.115 4.115 12 S -0.123 6.123 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.128 3.872 22 C -0.134 4.134 23 C -0.082 4.082 24 C -0.171 4.171 25 C 0.092 3.908 26 N -0.476 5.476 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.268 0.732 41 H 0.149 0.851 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 23.329 14.883 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.140 4.140 4 C -0.051 4.051 5 H 0.146 0.854 6 C 0.311 3.689 7 O -0.393 6.393 8 O -0.258 6.258 9 C -0.006 4.006 10 C -0.136 4.136 11 C -0.263 4.263 12 S 0.105 5.895 13 C -0.667 4.667 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.504 5.504 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.010 4.010 22 C -0.153 4.153 23 C -0.108 4.108 24 C -0.191 4.191 25 C -0.065 4.065 26 N -0.185 5.185 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.766 22.095 16.010 27.425 hybrid contribution 1.638 1.177 -2.704 3.373 sum -1.128 23.272 13.306 26.831 Atomic orbital electron populations 1.21739 0.95564 1.02057 1.01423 1.21808 0.96082 0.95222 1.04340 1.21590 0.89796 0.99172 1.03468 1.19818 0.98258 0.92071 0.94944 0.85438 1.23264 0.77462 0.80585 0.87569 1.90646 1.35636 1.61018 1.51967 1.86537 1.68776 1.28811 1.41706 1.23334 0.99152 0.95747 0.82361 1.21289 1.02280 0.91832 0.98174 1.23180 1.02628 1.02894 0.97615 1.84652 1.69003 1.06205 1.29602 1.22649 1.36902 1.01806 1.05374 0.90914 1.25017 0.95166 0.95179 0.98396 1.70004 1.37089 1.04944 1.38409 0.86209 0.79589 0.77538 0.82102 1.19909 1.20791 1.19915 1.20422 0.96815 0.94618 0.89158 1.22371 0.98453 0.93797 1.00705 1.21657 0.95952 0.95444 0.97772 1.22178 1.01650 1.01437 0.93809 1.22660 0.95628 0.88974 0.99224 1.67308 1.10616 1.15062 1.25500 0.92862 0.92239 0.93068 0.89228 0.91408 0.90043 0.91283 0.91080 0.91113 0.90294 0.90298 0.91778 0.91780 0.92181 0.83353 0.84756 0.84813 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.14 -1.21 5.57 -26.73 -0.15 -1.36 16 3 C -0.10 -0.87 4.65 -26.73 -0.12 -1.00 16 4 C -0.03 -0.31 2.64 -92.92 -0.25 -0.56 16 5 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 6 C 0.47 5.74 7.01 36.01 0.25 5.99 16 7 O -0.50 -7.20 12.86 -18.75 -0.24 -7.44 16 8 O -0.34 -4.31 7.36 -39.25 -0.29 -4.60 16 9 C 0.07 0.94 5.47 37.16 0.20 1.14 16 10 C -0.10 -1.52 5.60 -26.72 -0.15 -1.67 16 11 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 12 S -0.12 -3.14 21.44 -107.50 -2.30 -5.45 16 13 C -0.52 -14.70 9.50 30.94 0.29 -14.41 16 14 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 15 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 16 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 17 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.13 1.40 5.69 -82.58 -0.47 0.93 16 22 C -0.13 -1.42 8.27 -39.44 -0.33 -1.75 16 23 C -0.08 -0.71 10.18 -39.27 -0.40 -1.11 16 24 C -0.17 -1.28 10.11 -39.44 -0.40 -1.68 16 25 C 0.09 0.79 11.18 -17.55 -0.20 0.59 16 26 N -0.48 -5.17 10.27 -9.47 -0.10 -5.27 16 27 H 0.05 0.43 8.14 -51.94 -0.42 0.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.93 5.46 -51.93 -0.28 0.65 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.15 1.66 5.95 -52.49 -0.31 1.35 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -32.21 380.52 -9.62 -41.83 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.90 Total: -0.36 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.23 Total: -15.83 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.64 Total: -30.23 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.53 Total: -12.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.30 Total: -5.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.21 -9.62 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805553820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.356 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds