Wall clock time and date at job start Tue Mar 31 2020 14:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47147 * 2 1 4 4 C 1.53002 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46938 * 304.99963 * 4 3 2 6 6 C 1.50703 * 109.47058 * 65.00015 * 4 3 2 7 7 O 1.20830 * 119.99635 * 119.99523 * 6 4 3 8 8 O 1.34228 * 120.00072 * 300.00046 * 6 4 3 9 9 C 1.45193 * 116.99805 * 179.97438 * 8 6 4 10 10 C 1.53009 * 109.46942 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46874 * 180.02562 * 10 9 8 12 12 S 1.81000 * 109.46645 * 180.02562 * 11 10 9 13 13 C 1.76202 * 99.99831 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99938 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99765 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00293 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99751 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47130 * 60.00319 * 17 15 13 19 19 H 1.48499 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47198 * 300.00463 * 17 15 13 21 21 C 1.50703 * 109.46845 * 184.99801 * 4 3 2 22 22 C 1.38225 * 119.61869 * 274.99900 * 21 4 3 23 23 C 1.38635 * 119.15939 * 179.97438 * 22 21 4 24 24 C 1.38675 * 118.41956 * 0.02562 * 23 22 21 25 25 C 1.38186 * 119.16332 * 0.27967 * 24 23 22 26 26 N 1.31860 * 119.61591 * 94.98255 * 21 4 3 27 27 H 1.08989 * 109.47160 * 60.00328 * 1 2 3 28 28 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46824 * 299.99880 * 1 2 3 30 30 H 1.09002 * 109.47243 * 240.00002 * 2 1 3 31 31 H 1.09004 * 109.47264 * 120.00157 * 2 1 3 32 32 H 1.09002 * 109.47047 * 59.99882 * 3 2 1 33 33 H 1.09004 * 109.47167 * 300.00217 * 3 2 1 34 34 H 1.08998 * 109.47657 * 299.99955 * 9 8 6 35 35 H 1.09002 * 109.47254 * 60.00282 * 9 8 6 36 36 H 1.08998 * 109.47211 * 300.00599 * 10 9 8 37 37 H 1.09002 * 109.46612 * 60.00260 * 10 9 8 38 38 H 1.09002 * 109.47230 * 299.99949 * 11 10 9 39 39 H 1.08992 * 109.47228 * 60.00482 * 11 10 9 40 40 H 0.96999 * 119.99905 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.42054 * 0.02562 * 22 21 4 42 42 H 1.07998 * 120.78847 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.41399 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.61418 * 179.70216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0729 0.8418 -1.2868 7 8 4.7678 1.4961 -2.0277 8 8 3.7488 -0.4199 -1.6104 9 6 4.2680 -0.9326 -2.8656 10 6 3.7971 -2.3752 -3.0611 11 6 4.3447 -2.9157 -4.3836 12 16 3.7870 -4.6220 -4.6151 13 6 4.5399 -4.9820 -6.1670 14 1 5.1340 -4.2309 -6.6661 15 6 4.3702 -6.2314 -6.7474 16 7 3.6465 -7.1470 -6.1388 17 14 5.1690 -6.6133 -8.3923 18 1 6.6423 -6.4707 -8.2721 19 1 4.8369 -8.0042 -8.7927 20 1 4.6624 -5.6684 -9.4198 21 6 4.0722 2.8579 0.1244 22 6 4.2017 3.6385 -1.0090 23 6 4.6641 4.9394 -0.8841 24 6 4.9809 5.4086 0.3819 25 6 4.8318 4.5678 1.4684 26 7 4.3828 3.3376 1.3128 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9041 -0.3167 -3.6880 35 1 5.3575 -0.9059 -2.8461 36 1 4.1612 -2.9909 -2.2386 37 1 2.7075 -2.4022 -3.0804 38 1 3.9808 -2.3001 -5.2062 39 1 5.4341 -2.8887 -4.3638 40 1 3.5276 -8.0200 -6.5447 41 1 3.9451 3.2401 -1.9795 42 1 4.7749 5.5725 -1.7520 43 1 5.3443 6.4167 0.5163 44 1 5.0810 4.9241 2.4570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805553820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:07 Heat of formation + Delta-G solvation = -91.392553 kcal Electronic energy + Delta-G solvation = -24066.170774 eV Core-core repulsion = 20494.440222 eV Total energy + Delta-G solvation = -3571.730552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19584 -40.81357 -38.00226 -36.90337 -34.86146 -34.57589 -33.60500 -33.09460 -30.33161 -28.20416 -27.46554 -26.03431 -24.53569 -23.95563 -22.78969 -22.29214 -21.43431 -19.57682 -18.79577 -18.21219 -17.92820 -17.38609 -16.89814 -16.86617 -16.43538 -16.18525 -16.05763 -15.37295 -15.23922 -14.80770 -14.68649 -14.37253 -14.32023 -14.01143 -13.89932 -13.80145 -13.25339 -13.17124 -13.02211 -12.93096 -12.69270 -12.62785 -12.47253 -12.37906 -12.03197 -11.81894 -11.66856 -11.59204 -11.31132 -11.24115 -11.14122 -10.76874 -10.45399 -10.36154 -9.92328 -8.67855 -8.38034 -6.14444 0.09641 0.34737 1.02661 1.25226 1.39555 1.40760 1.49377 1.80825 2.27018 2.80906 2.96350 3.10653 3.26721 3.42437 3.81416 3.85438 3.90000 3.93954 3.97899 4.06879 4.15709 4.21565 4.24387 4.26614 4.33059 4.43266 4.49529 4.65856 4.68033 4.69863 4.79895 4.85631 4.93580 5.00513 5.02550 5.11445 5.19807 5.27693 5.31768 5.38973 5.39725 5.42438 5.58528 5.76971 6.17362 6.58836 6.96494 7.04304 8.70927 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.002158 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.094782 B =12970.717309 C =13956.178668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C -0.093 4.093 4 C -0.025 4.025 5 H 0.133 0.867 6 C 0.470 3.530 7 O -0.525 6.525 8 O -0.340 6.340 9 C 0.077 3.923 10 C -0.085 4.085 11 C -0.092 4.092 12 S -0.184 6.184 13 C -0.541 4.541 14 H 0.074 0.926 15 C 0.016 3.984 16 N -0.906 5.906 17 Si 0.993 3.007 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.265 1.265 21 C 0.110 3.890 22 C -0.153 4.153 23 C -0.088 4.088 24 C -0.164 4.164 25 C 0.084 3.916 26 N -0.498 5.498 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.272 0.728 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 25.312 15.185 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.045 4.045 5 H 0.151 0.849 6 C 0.314 3.686 7 O -0.414 6.414 8 O -0.256 6.256 9 C 0.002 3.998 10 C -0.123 4.123 11 C -0.240 4.240 12 S 0.045 5.955 13 C -0.689 4.689 14 H 0.092 0.908 15 C -0.189 4.189 16 N -0.542 5.542 17 Si 0.815 3.185 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.189 1.189 21 C -0.027 4.027 22 C -0.173 4.173 23 C -0.114 4.114 24 C -0.183 4.183 25 C -0.073 4.073 26 N -0.207 5.207 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.179 24.083 16.323 29.175 hybrid contribution 1.465 0.699 -2.700 3.150 sum -0.714 24.781 13.623 28.288 Atomic orbital electron populations 1.21732 0.94971 1.02029 1.01963 1.21778 0.96598 0.95229 1.03711 1.21536 0.88700 0.99010 1.03858 1.19848 0.99058 0.91997 0.93566 0.84900 1.23724 0.76879 0.80011 0.87996 1.90641 1.36634 1.61363 1.52789 1.86552 1.68704 1.29285 1.41039 1.23069 0.99093 0.94425 0.83215 1.21101 1.02242 0.93037 0.95968 1.23067 1.02668 0.98456 0.99855 1.84627 1.69872 1.11692 1.29325 1.23018 1.37205 1.02368 1.06299 0.90820 1.26056 0.95571 0.94869 1.02451 1.70134 1.38359 1.05433 1.40273 0.85080 0.78736 0.77659 0.77035 1.19003 1.19971 1.18941 1.20475 0.97803 0.94866 0.89527 1.22372 0.99810 0.95010 1.00116 1.21989 0.95237 0.94926 0.99266 1.22545 1.00207 1.02698 0.92844 1.23243 0.94734 0.88394 1.00954 1.67316 1.11561 1.16422 1.25418 0.92931 0.92559 0.91936 0.90851 0.90973 0.89063 0.91386 0.90584 0.91036 0.90305 0.90045 0.91342 0.91520 0.91908 0.84620 0.82751 0.81494 0.79867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.14 -2.31 5.57 30.59 0.17 -2.14 16 3 C -0.09 -1.52 4.65 30.59 0.14 -1.38 16 4 C -0.02 -0.49 2.64 -12.28 -0.03 -0.53 16 5 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 6 C 0.47 11.41 7.01 71.24 0.50 11.91 16 7 O -0.52 -14.97 12.86 21.95 0.28 -14.69 16 8 O -0.34 -8.41 7.36 -51.40 -0.38 -8.78 16 9 C 0.08 2.05 5.47 71.99 0.39 2.44 16 10 C -0.09 -2.61 5.60 30.60 0.17 -2.44 16 11 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 12 S -0.18 -9.59 21.44 -56.49 -1.21 -10.81 16 13 C -0.54 -30.94 9.50 67.96 0.65 -30.30 16 14 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 15 C 0.02 0.89 5.49 84.86 0.47 1.35 16 16 N -0.91 -54.25 13.22 21.65 0.29 -53.96 16 17 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 C 0.11 2.35 5.69 42.55 0.24 2.59 16 22 C -0.15 -3.19 8.27 22.36 0.19 -3.00 16 23 C -0.09 -1.38 10.18 22.47 0.23 -1.15 16 24 C -0.16 -2.02 10.11 22.36 0.23 -1.80 16 25 C 0.08 1.24 11.18 84.67 0.95 2.19 16 26 N -0.50 -10.21 10.27 -183.88 -1.89 -12.10 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.50 5.46 -2.39 -0.01 1.49 16 31 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.14 3.09 5.95 -2.91 -0.02 3.07 16 42 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -69.83 380.52 5.50 -64.33 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.97 Total: 17.31 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 5.41 Total: -26.98 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -1.60 Total: -66.06 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.10 Total: -23.48 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.21 Total: -10.81 kcal Total: -69.83 5.50 -64.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805553820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.060 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds