Wall clock time and date at job start Tue Mar 31 2020 14:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 O 1.20825 * 119.99940 * 239.99574 * 6 4 3 8 8 O 1.34237 * 120.00016 * 60.00027 * 6 4 3 9 9 C 1.45200 * 116.99747 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46567 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46617 * 180.02562 * 10 9 8 12 12 S 1.81002 * 109.46936 * 180.02562 * 11 10 9 13 13 C 1.76207 * 100.00199 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99773 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00189 * 179.97438 * 13 12 11 16 16 N 1.31638 * 119.99809 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00112 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46970 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47030 * 120.00099 * 17 15 13 20 20 H 1.48497 * 109.47114 * 239.99753 * 17 15 13 21 21 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 22 22 C 1.38232 * 119.61923 * 84.73171 * 21 4 3 23 23 C 1.38624 * 119.15905 * 179.75402 * 22 21 4 24 24 C 1.38681 * 118.42184 * 0.50221 * 23 22 21 25 25 C 1.38182 * 119.15992 * 359.73378 * 24 23 22 26 26 N 1.31856 * 119.61451 * 264.99531 * 21 4 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.09001 * 109.47001 * 299.99744 * 9 8 6 35 35 H 1.08996 * 109.47039 * 60.00486 * 9 8 6 36 36 H 1.09001 * 109.47208 * 299.99565 * 10 9 8 37 37 H 1.08996 * 109.47075 * 59.99907 * 10 9 8 38 38 H 1.09001 * 109.47783 * 299.99547 * 11 10 9 39 39 H 1.08996 * 109.47572 * 60.00091 * 11 10 9 40 40 H 0.96996 * 119.99565 * 179.97438 * 16 15 13 41 41 H 1.07993 * 120.41711 * 359.97352 * 22 21 4 42 42 H 1.07998 * 120.79097 * 180.26000 * 23 22 21 43 43 H 1.07995 * 120.41924 * 179.70922 * 24 23 22 44 44 H 1.08001 * 119.61449 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 8 4.7668 3.3305 -0.7453 8 8 3.7486 3.5933 1.1984 9 6 4.2683 4.9481 1.2510 10 6 3.7977 5.6250 2.5400 11 6 4.3448 7.0527 2.5952 12 16 3.7888 7.8533 4.1203 13 6 4.5420 9.4346 3.9280 14 1 5.1354 9.6470 3.0511 15 6 4.3726 10.4072 4.9036 16 7 3.6489 10.1485 5.9723 17 14 5.1717 12.0833 4.7001 18 1 5.9270 12.1197 3.4221 19 1 4.1220 13.1336 4.6855 20 1 6.1018 12.3289 5.8314 21 6 4.0718 0.8421 -1.2886 22 6 4.1951 1.6390 -2.4113 23 6 4.6624 1.0781 -3.5897 24 6 4.9798 -0.2719 -3.5978 25 6 4.8260 -1.0066 -2.4376 26 7 4.3831 -0.4385 -1.3329 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.3578 4.9202 1.2325 35 1 3.9045 5.5104 0.3912 36 1 2.7082 5.6528 2.5589 37 1 4.1618 5.0624 3.3996 38 1 5.4343 7.0254 2.5761 39 1 3.9803 7.6150 1.7355 40 1 3.5309 10.8281 6.6543 41 1 3.9340 2.6860 -2.3700 42 1 4.7730 1.6772 -4.4814 43 1 5.3422 -0.7431 -4.4994 44 1 5.0706 -2.0586 -2.4357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805553823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:11 Heat of formation + Delta-G solvation = -76.392196 kcal Electronic energy + Delta-G solvation = -23862.019738 eV Core-core repulsion = 20290.939650 eV Total energy + Delta-G solvation = -3571.080088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29939 -40.00045 -37.00911 -36.14909 -33.53429 -32.80764 -32.46154 -32.41221 -29.75420 -26.76541 -25.61041 -25.21433 -23.88102 -23.16150 -21.52011 -21.36009 -20.63068 -17.90055 -17.46009 -17.24708 -16.97405 -16.49065 -16.28137 -15.55203 -15.35870 -14.83573 -14.77101 -14.43103 -14.24974 -13.83886 -13.69276 -13.38312 -13.23908 -12.90462 -12.80714 -12.66595 -12.39063 -12.10681 -11.79979 -11.52242 -11.43121 -11.33789 -11.15789 -11.02229 -10.91584 -10.89751 -10.69595 -10.43341 -10.32010 -10.02514 -9.74464 -9.63980 -9.24052 -9.10040 -8.37174 -6.58224 -6.26537 -3.97578 0.78463 1.02854 1.98600 2.40134 3.19335 3.20447 3.28418 3.48504 3.52996 3.84394 4.17929 4.23390 4.52348 4.54333 4.62600 4.71278 4.81107 4.88387 4.88633 5.05086 5.07453 5.10477 5.14060 5.26333 5.26491 5.36636 5.40771 5.44856 5.51779 5.54934 5.61547 5.74371 5.81457 5.83558 5.87413 5.93520 5.95944 6.07445 6.13128 6.34047 6.42243 6.45271 6.64446 7.56467 7.57837 7.67084 8.33467 9.20038 10.81655 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002030 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.892307 B =13791.417212 C =14723.956246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.031 4.031 5 H 0.128 0.872 6 C 0.468 3.532 7 O -0.504 6.504 8 O -0.348 6.348 9 C 0.072 3.928 10 C -0.098 4.098 11 C -0.114 4.114 12 S -0.124 6.124 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.869 5.869 17 Si 0.920 3.080 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.280 1.280 21 C 0.131 3.869 22 C -0.134 4.134 23 C -0.082 4.082 24 C -0.171 4.171 25 C 0.092 3.908 26 N -0.473 5.473 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.267 0.733 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -23.037 -17.518 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.145 4.145 4 C -0.051 4.051 5 H 0.146 0.854 6 C 0.310 3.690 7 O -0.392 6.392 8 O -0.264 6.264 9 C -0.003 4.003 10 C -0.136 4.136 11 C -0.263 4.263 12 S 0.104 5.896 13 C -0.666 4.666 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.504 5.504 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.007 4.007 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.191 4.191 25 C -0.065 4.065 26 N -0.182 5.182 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.801 -23.673 -15.981 28.699 hybrid contribution 1.638 2.196 -2.001 3.393 sum -1.163 -21.476 -17.982 28.035 Atomic orbital electron populations 1.21770 0.95556 1.01704 1.01984 1.21491 0.95802 0.95435 1.02936 1.21633 0.89909 0.98939 1.04041 1.19788 0.98250 0.89668 0.97358 0.85394 1.23257 0.77611 0.88455 0.79658 1.90648 1.35653 1.72797 1.40118 1.86472 1.69391 1.27737 1.42761 1.23323 0.99103 0.77625 1.00219 1.21289 1.02338 0.94558 0.95443 1.23177 1.02647 0.96426 1.04051 1.84666 1.69073 1.13789 1.22028 1.22733 1.36759 0.97525 1.09551 0.90799 1.25027 0.95181 0.99098 0.94526 1.70029 1.37205 1.34503 1.08709 0.86090 0.78962 0.82006 0.78336 1.19592 1.20534 1.20538 1.20385 0.96574 0.89933 0.93759 1.22343 0.98550 1.01897 0.92606 1.21640 0.95953 0.94960 0.98257 1.22167 1.01709 0.95198 1.00037 1.22656 0.95684 1.00201 0.88003 1.67331 1.10524 1.11295 1.29046 0.92349 0.92900 0.92667 0.91724 0.91261 0.89211 0.91223 0.91078 0.91045 0.90274 0.90275 0.91755 0.91747 0.92290 0.83464 0.84818 0.84879 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.15 0.37 -0.69 16 2 C -0.12 -0.92 5.71 -26.74 -0.15 -1.08 16 3 C -0.11 -0.90 4.64 -26.73 -0.12 -1.03 16 4 C -0.03 -0.31 2.62 -92.92 -0.24 -0.55 16 5 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 6 C 0.47 5.80 7.04 36.01 0.25 6.06 16 7 O -0.50 -7.24 12.88 -18.75 -0.24 -7.48 16 8 O -0.35 -4.55 10.03 -39.28 -0.39 -4.94 16 9 C 0.07 1.00 5.47 37.16 0.20 1.21 16 10 C -0.10 -1.55 5.60 -26.73 -0.15 -1.70 16 11 C -0.11 -2.24 5.67 37.15 0.21 -2.03 16 12 S -0.12 -3.18 21.44 -107.50 -2.30 -5.49 16 13 C -0.52 -14.69 9.50 30.94 0.29 -14.39 16 14 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 15 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 16 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 17 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.13 1.40 4.88 -82.59 -0.40 1.00 16 22 C -0.13 -1.41 8.27 -39.44 -0.33 -1.74 16 23 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 24 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 25 C 0.09 0.76 11.18 -17.55 -0.20 0.56 16 26 N -0.47 -4.93 9.61 -9.47 -0.09 -5.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.56 6.89 -51.93 -0.36 0.21 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.74 8.00 -51.93 -0.42 0.33 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 35 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.15 1.64 5.97 -52.49 -0.31 1.33 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -32.30 383.15 -9.68 -41.98 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.97 Total: -0.95 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.16 Total: -15.26 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.64 Total: -30.02 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.64 Total: -12.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.30 -9.68 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805553823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.414 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds