Wall clock time and date at job start Tue Mar 31 2020 14:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 O 1.20825 * 119.99940 * 239.99574 * 6 4 3 8 8 O 1.34237 * 120.00016 * 60.00027 * 6 4 3 9 9 C 1.45200 * 116.99747 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46567 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46617 * 180.02562 * 10 9 8 12 12 S 1.81002 * 109.46936 * 180.02562 * 11 10 9 13 13 C 1.76207 * 100.00199 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99773 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00189 * 179.97438 * 13 12 11 16 16 N 1.31638 * 119.99809 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00112 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46970 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47030 * 120.00099 * 17 15 13 20 20 H 1.48497 * 109.47114 * 239.99753 * 17 15 13 21 21 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 22 22 C 1.38232 * 119.61923 * 84.73171 * 21 4 3 23 23 C 1.38624 * 119.15905 * 179.75402 * 22 21 4 24 24 C 1.38681 * 118.42184 * 0.50221 * 23 22 21 25 25 C 1.38182 * 119.15992 * 359.73378 * 24 23 22 26 26 N 1.31856 * 119.61451 * 264.99531 * 21 4 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.09001 * 109.47001 * 299.99744 * 9 8 6 35 35 H 1.08996 * 109.47039 * 60.00486 * 9 8 6 36 36 H 1.09001 * 109.47208 * 299.99565 * 10 9 8 37 37 H 1.08996 * 109.47075 * 59.99907 * 10 9 8 38 38 H 1.09001 * 109.47783 * 299.99547 * 11 10 9 39 39 H 1.08996 * 109.47572 * 60.00091 * 11 10 9 40 40 H 0.96996 * 119.99565 * 179.97438 * 16 15 13 41 41 H 1.07993 * 120.41711 * 359.97352 * 22 21 4 42 42 H 1.07998 * 120.79097 * 180.26000 * 23 22 21 43 43 H 1.07995 * 120.41924 * 179.70922 * 24 23 22 44 44 H 1.08001 * 119.61449 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 8 4.7668 3.3305 -0.7453 8 8 3.7486 3.5933 1.1984 9 6 4.2683 4.9481 1.2510 10 6 3.7977 5.6250 2.5400 11 6 4.3448 7.0527 2.5952 12 16 3.7888 7.8533 4.1203 13 6 4.5420 9.4346 3.9280 14 1 5.1354 9.6470 3.0511 15 6 4.3726 10.4072 4.9036 16 7 3.6489 10.1485 5.9723 17 14 5.1717 12.0833 4.7001 18 1 5.9270 12.1197 3.4221 19 1 4.1220 13.1336 4.6855 20 1 6.1018 12.3289 5.8314 21 6 4.0718 0.8421 -1.2886 22 6 4.1951 1.6390 -2.4113 23 6 4.6624 1.0781 -3.5897 24 6 4.9798 -0.2719 -3.5978 25 6 4.8260 -1.0066 -2.4376 26 7 4.3831 -0.4385 -1.3329 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.3578 4.9202 1.2325 35 1 3.9045 5.5104 0.3912 36 1 2.7082 5.6528 2.5589 37 1 4.1618 5.0624 3.3996 38 1 5.4343 7.0254 2.5761 39 1 3.9803 7.6150 1.7355 40 1 3.5309 10.8281 6.6543 41 1 3.9340 2.6860 -2.3700 42 1 4.7730 1.6772 -4.4814 43 1 5.3422 -0.7431 -4.4994 44 1 5.0706 -2.0586 -2.4357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805553823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:10 Heat of formation + Delta-G solvation = -92.625577 kcal Electronic energy + Delta-G solvation = -23862.723670 eV Core-core repulsion = 20290.939650 eV Total energy + Delta-G solvation = -3571.784020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.18061 -40.82518 -38.03757 -36.89987 -34.90478 -34.58496 -33.45688 -33.10800 -30.46697 -28.20926 -27.47994 -26.06189 -24.55352 -23.98379 -22.73478 -22.20854 -21.47503 -19.58606 -18.78958 -18.04534 -17.95193 -17.40071 -17.02427 -16.90610 -16.45949 -16.19733 -15.98824 -15.72261 -15.16497 -14.88989 -14.54423 -14.44771 -14.15738 -13.94180 -13.86027 -13.77499 -13.40065 -13.19722 -13.07435 -12.96748 -12.62611 -12.48380 -12.44489 -12.38747 -12.09755 -12.05974 -11.60273 -11.56224 -11.50079 -11.26077 -11.16561 -10.72518 -10.43020 -10.36146 -9.91486 -8.68426 -8.38852 -6.15160 0.11598 0.36278 1.00176 1.24833 1.38168 1.39188 1.51259 1.80262 2.26200 2.83275 2.95734 3.12683 3.25225 3.39491 3.81358 3.84757 3.89766 3.94491 3.96407 4.06828 4.14295 4.21037 4.22457 4.25186 4.31799 4.39783 4.51980 4.64008 4.65052 4.67842 4.77470 4.85949 4.91408 5.00338 5.01303 5.11146 5.20712 5.24844 5.28545 5.33229 5.39419 5.40305 5.47539 5.78244 6.17443 6.56487 6.98499 7.03864 8.70674 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002030 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.892307 B =13791.417212 C =14723.956246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.102 4.102 4 C -0.025 4.025 5 H 0.134 0.866 6 C 0.470 3.530 7 O -0.524 6.524 8 O -0.348 6.348 9 C 0.080 3.920 10 C -0.086 4.086 11 C -0.091 4.091 12 S -0.185 6.185 13 C -0.539 4.539 14 H 0.074 0.926 15 C 0.015 3.985 16 N -0.906 5.906 17 Si 0.995 3.005 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.272 1.272 21 C 0.116 3.884 22 C -0.155 4.155 23 C -0.089 4.089 24 C -0.165 4.165 25 C 0.084 3.916 26 N -0.491 5.491 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.272 0.728 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -23.873 -19.121 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.140 4.140 4 C -0.045 4.045 5 H 0.152 0.848 6 C 0.313 3.687 7 O -0.413 6.413 8 O -0.265 6.265 9 C 0.005 3.995 10 C -0.125 4.125 11 C -0.240 4.240 12 S 0.044 5.956 13 C -0.687 4.687 14 H 0.092 0.908 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.817 3.183 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.197 1.197 21 C -0.021 4.021 22 C -0.175 4.175 23 C -0.114 4.114 24 C -0.184 4.184 25 C -0.073 4.073 26 N -0.201 5.201 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.183 0.817 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.235 -24.523 -17.584 30.259 hybrid contribution 1.473 2.322 -1.598 3.181 sum -0.761 -22.201 -19.183 29.351 Atomic orbital electron populations 1.21762 0.94832 1.02194 1.02090 1.21422 0.96332 0.94697 1.02561 1.21623 0.88832 0.99526 1.04048 1.19825 0.99088 0.87868 0.97684 0.84821 1.23733 0.77032 0.89034 0.78890 1.90644 1.36617 1.73338 1.40695 1.86462 1.69437 1.27270 1.43285 1.23072 0.99107 0.78267 0.99066 1.21107 1.02305 0.92399 0.96654 1.23063 1.02716 0.97895 1.00362 1.84640 1.69945 1.14207 1.26834 1.23078 1.37071 0.98694 1.09828 0.90813 1.26068 0.95586 1.03367 0.94006 1.70154 1.38447 1.36051 1.09604 0.84957 0.78101 0.76594 0.78668 1.18729 1.19645 1.19709 1.20415 0.97486 0.90357 0.93869 1.22340 0.99976 1.01466 0.93686 1.21958 0.95313 0.95924 0.98254 1.22524 1.00330 0.94591 1.00940 1.23229 0.94783 1.01566 0.87757 1.67339 1.11309 1.11119 1.30293 0.92142 0.92896 0.92001 0.92602 0.91070 0.88987 0.91367 0.90922 0.90460 0.90022 0.90284 0.91456 0.91263 0.91910 0.84804 0.82920 0.81656 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.11 -1.66 5.71 30.59 0.17 -1.49 16 3 C -0.10 -1.68 4.64 30.59 0.14 -1.54 16 4 C -0.02 -0.49 2.62 -12.29 -0.03 -0.52 16 5 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 6 C 0.47 11.51 7.04 71.24 0.50 12.01 16 7 O -0.52 -15.02 12.88 21.97 0.28 -14.74 16 8 O -0.35 -8.88 10.03 -51.48 -0.52 -9.40 16 9 C 0.08 2.15 5.47 71.98 0.39 2.55 16 10 C -0.09 -2.68 5.60 30.59 0.17 -2.50 16 11 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 12 S -0.18 -9.67 21.44 -56.49 -1.21 -10.88 16 13 C -0.54 -30.84 9.50 67.95 0.65 -30.20 16 14 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 15 C 0.01 0.84 5.49 84.86 0.47 1.30 16 16 N -0.91 -54.28 13.22 21.65 0.29 -53.99 16 17 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 C 0.12 2.43 4.88 42.55 0.21 2.64 16 22 C -0.15 -3.22 8.27 22.36 0.18 -3.03 16 23 C -0.09 -1.39 10.18 22.47 0.23 -1.16 16 24 C -0.16 -2.03 10.11 22.36 0.23 -1.81 16 25 C 0.08 1.22 11.18 84.67 0.95 2.16 16 26 N -0.49 -9.72 9.61 -183.88 -1.77 -11.49 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.94 6.89 -2.39 -0.02 0.92 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 35 H 0.08 2.00 8.13 -2.39 -0.02 1.98 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 39 H 0.07 2.63 8.14 -2.40 -0.02 2.61 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.13 3.06 5.97 -2.91 -0.02 3.04 16 42 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 44 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -69.79 383.15 5.45 -64.34 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.97 Total: 16.36 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 5.38 Total: -25.97 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -1.48 Total: -65.48 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.23 Total: -24.13 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.21 Total: -10.88 kcal Total: -69.79 5.45 -64.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805553823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.288 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds