Wall clock time and date at job start Tue Mar 31 2020 14:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.50697 * 109.47466 * 300.00004 * 4 2 1 7 7 O 1.20822 * 120.00115 * 240.00066 * 6 4 2 8 8 O 1.34234 * 119.99749 * 59.99914 * 6 4 2 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47034 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46970 * 180.02562 * 10 9 8 12 12 S 1.80997 * 109.47223 * 179.97438 * 11 10 9 13 13 C 1.76200 * 100.00061 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00010 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31629 * 119.99906 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99835 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47253 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47338 * 120.00330 * 17 15 13 20 20 H 1.48507 * 109.46732 * 239.99839 * 17 15 13 21 21 C 1.50699 * 109.47078 * 180.02562 * 4 2 1 22 22 C 1.38678 * 120.41749 * 239.72150 * 21 4 2 23 23 C 1.38632 * 118.41655 * 179.78395 * 22 21 4 24 24 C 1.38226 * 119.16180 * 0.51186 * 23 22 21 25 25 N 1.31855 * 120.76537 * 359.72741 * 24 23 22 26 26 C 1.31886 * 121.72421 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.47093 * 300.00565 * 9 8 6 35 35 H 1.09002 * 109.46827 * 59.99933 * 9 8 6 36 36 H 1.08991 * 109.47430 * 300.00133 * 10 9 8 37 37 H 1.09002 * 109.46790 * 60.00316 * 10 9 8 38 38 H 1.08999 * 109.47403 * 300.00246 * 11 10 9 39 39 H 1.09002 * 109.46918 * 59.99981 * 11 10 9 40 40 H 0.97001 * 119.99826 * 179.97438 * 16 15 13 41 41 H 1.07991 * 120.79504 * 0.02616 * 22 21 4 42 42 H 1.08007 * 120.41558 * 180.22309 * 23 22 21 43 43 H 1.08004 * 119.61814 * 179.75157 * 24 23 22 44 44 H 1.07990 * 119.61822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5376 -2.1420 -1.2494 7 8 2.3227 -3.0603 -1.2495 8 8 0.2179 -2.3872 -1.2493 9 6 -0.1939 -3.7796 -1.2500 10 6 -1.7218 -3.8596 -1.2492 11 6 -2.1556 -5.3268 -1.2493 12 16 -3.9631 -5.4215 -1.2476 13 6 -4.1779 -7.1704 -1.2488 14 1 -3.3154 -7.8204 -1.2497 15 6 -5.4556 -7.7127 -1.2474 16 7 -6.5068 -6.9205 -1.2457 17 14 -5.6832 -9.5668 -1.2479 18 1 -4.3540 -10.2287 -1.2505 19 1 -6.4369 -9.9733 -0.0347 20 1 -6.4400 -9.9721 -2.4597 21 6 3.5469 -0.7218 -1.2490 22 6 4.2495 -0.1290 -2.2874 23 6 5.6349 -0.1495 -2.2428 24 6 6.2655 -0.7652 -1.1780 25 7 5.5650 -1.3234 -0.2103 26 6 4.2462 -1.3176 -0.2168 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 0.1958 -4.2733 -2.1403 35 1 0.1960 -4.2742 -0.3603 36 1 -2.1110 -3.3661 -0.3588 37 1 -2.1119 -3.3649 -2.1387 38 1 -1.7664 -5.8208 -2.1395 39 1 -1.7654 -5.8211 -0.3596 40 1 -7.3997 -7.2995 -1.2452 41 1 3.7297 0.3410 -3.1091 42 1 6.2142 0.3057 -3.0326 43 1 7.3445 -0.7891 -1.1379 44 1 3.7064 -1.7854 0.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805555949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:13 Heat of formation + Delta-G solvation = -77.296842 kcal Electronic energy + Delta-G solvation = -24229.095507 eV Core-core repulsion = 20657.976191 eV Total energy + Delta-G solvation = -3571.119316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.31980 -40.05472 -37.12560 -36.56421 -33.51193 -32.87472 -32.46049 -31.77400 -28.58189 -27.27193 -26.41086 -25.44149 -24.01603 -23.10662 -21.76825 -21.31003 -20.22584 -17.99989 -17.51759 -17.38600 -17.05591 -16.59960 -16.20266 -15.67424 -14.90000 -14.83637 -14.59361 -14.48511 -14.16756 -13.71329 -13.59092 -13.41443 -13.21998 -12.99216 -12.88524 -12.57557 -12.40943 -12.31608 -12.11921 -11.58967 -11.29014 -11.24593 -11.11872 -11.09286 -10.94121 -10.85319 -10.69988 -10.51932 -10.26797 -10.10200 -9.75203 -9.64461 -9.30255 -9.10133 -8.37528 -6.58429 -6.26728 -3.97683 0.73133 0.95425 2.03446 2.49484 3.19371 3.20841 3.28516 3.48106 3.55930 3.93484 4.17913 4.20071 4.29018 4.44930 4.55208 4.63805 4.67687 4.74594 4.93737 5.02133 5.07708 5.10569 5.15739 5.18045 5.23782 5.36337 5.40598 5.43876 5.46437 5.55945 5.68518 5.73678 5.74811 5.78467 5.83126 5.86607 5.97347 6.12332 6.25750 6.33677 6.42103 6.42413 6.64388 7.57820 7.62114 7.67932 8.33439 9.19976 10.81465 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.002091 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.701183 B =13389.672873 C =14112.366796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.033 4.033 5 H 0.118 0.882 6 C 0.464 3.536 7 O -0.501 6.501 8 O -0.344 6.344 9 C 0.068 3.932 10 C -0.097 4.097 11 C -0.115 4.115 12 S -0.124 6.124 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.919 3.081 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.123 4.123 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.098 3.902 25 N -0.484 5.484 26 C 0.134 3.866 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.267 0.733 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.259 18.950 -0.476 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.052 4.052 5 H 0.136 0.864 6 C 0.306 3.694 7 O -0.389 6.389 8 O -0.261 6.261 9 C -0.007 4.007 10 C -0.135 4.135 11 C -0.263 4.263 12 S 0.104 5.896 13 C -0.666 4.666 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.125 4.125 22 C -0.090 4.090 23 C -0.195 4.195 24 C -0.058 4.058 25 N -0.192 5.192 26 C -0.023 4.023 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.928 19.060 0.222 28.308 hybrid contribution 0.340 -1.974 -0.860 2.180 sum 21.268 17.085 -0.637 27.288 Atomic orbital electron populations 1.22139 0.93026 1.04531 1.02210 1.21130 0.97450 0.96449 0.95242 1.21827 1.00989 0.94821 1.02486 1.20078 0.91344 0.90809 1.03009 0.86407 1.23373 0.81242 0.91966 0.72829 1.90704 1.56826 1.46609 1.44711 1.86570 1.24644 1.31759 1.83122 1.23317 0.96606 0.78122 1.02639 1.21280 0.90905 0.97045 1.04275 1.23182 1.03372 0.96447 1.03322 1.84642 0.96293 1.11777 1.96876 1.22735 0.95126 0.90135 1.58559 0.90800 1.25024 0.94955 0.99300 0.94533 1.70025 0.98244 1.34986 1.47214 0.86095 0.78398 0.83016 0.77914 1.19579 1.20525 1.20540 1.20279 0.94437 1.00928 0.96881 1.21465 0.94329 0.96321 0.96898 1.22107 0.95033 1.01961 1.00388 1.22825 1.00462 0.92925 0.89629 1.67742 1.08093 1.16539 1.26858 1.22526 0.89757 0.93419 0.96637 0.92135 0.89785 0.92184 0.90456 0.91881 0.92684 0.92186 0.91207 0.91115 0.90334 0.90360 0.91787 0.91755 0.92296 0.84681 0.84620 0.82753 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.67 37.16 0.32 -0.99 16 2 C -0.08 -0.63 2.32 -90.62 -0.21 -0.84 16 3 C -0.14 -0.88 8.95 37.16 0.33 -0.55 16 4 C -0.03 -0.28 2.11 -92.93 -0.20 -0.48 16 5 H 0.12 0.80 7.93 -51.93 -0.41 0.39 16 6 C 0.46 5.57 7.07 36.00 0.25 5.82 16 7 O -0.50 -7.53 14.87 -18.75 -0.28 -7.81 16 8 O -0.34 -4.28 7.14 -39.27 -0.28 -4.56 16 9 C 0.07 0.94 5.47 37.16 0.20 1.14 16 10 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 11 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 12 S -0.12 -3.18 21.44 -107.50 -2.30 -5.49 16 13 C -0.52 -14.69 9.50 30.94 0.29 -14.39 16 14 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 15 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 16 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 17 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.12 -1.13 3.14 -104.48 -0.33 -1.46 16 22 C -0.06 -0.49 9.81 -39.27 -0.39 -0.87 16 23 C -0.18 -1.23 10.11 -39.44 -0.40 -1.63 16 24 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 25 N -0.48 -5.47 10.36 -13.25 -0.14 -5.61 16 26 C 0.13 1.45 9.13 -17.55 -0.16 1.29 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.84 5.33 -51.93 -0.28 0.56 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.61 7.41 -51.93 -0.38 0.23 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.36 7.22 -51.93 -0.37 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.14 0.69 8.00 -52.49 -0.42 0.27 16 42 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.15 1.60 7.53 -52.49 -0.40 1.21 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -33.15 379.17 -8.96 -42.11 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.88 Total: -1.68 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.50 Total: -14.11 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.60 Total: -30.59 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.56 Total: -12.37 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.15 -8.96 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805555949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.185 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds