Wall clock time and date at job start Tue Mar 31 2020 14:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.50697 * 109.47466 * 300.00004 * 4 2 1 7 7 O 1.20822 * 120.00115 * 240.00066 * 6 4 2 8 8 O 1.34234 * 119.99749 * 59.99914 * 6 4 2 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47034 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46970 * 180.02562 * 10 9 8 12 12 S 1.80997 * 109.47223 * 179.97438 * 11 10 9 13 13 C 1.76200 * 100.00061 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00010 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31629 * 119.99906 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99835 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47253 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47338 * 120.00330 * 17 15 13 20 20 H 1.48507 * 109.46732 * 239.99839 * 17 15 13 21 21 C 1.50699 * 109.47078 * 180.02562 * 4 2 1 22 22 C 1.38678 * 120.41749 * 239.72150 * 21 4 2 23 23 C 1.38632 * 118.41655 * 179.78395 * 22 21 4 24 24 C 1.38226 * 119.16180 * 0.51186 * 23 22 21 25 25 N 1.31855 * 120.76537 * 359.72741 * 24 23 22 26 26 C 1.31886 * 121.72421 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.47093 * 300.00565 * 9 8 6 35 35 H 1.09002 * 109.46827 * 59.99933 * 9 8 6 36 36 H 1.08991 * 109.47430 * 300.00133 * 10 9 8 37 37 H 1.09002 * 109.46790 * 60.00316 * 10 9 8 38 38 H 1.08999 * 109.47403 * 300.00246 * 11 10 9 39 39 H 1.09002 * 109.46918 * 59.99981 * 11 10 9 40 40 H 0.97001 * 119.99826 * 179.97438 * 16 15 13 41 41 H 1.07991 * 120.79504 * 0.02616 * 22 21 4 42 42 H 1.08007 * 120.41558 * 180.22309 * 23 22 21 43 43 H 1.08004 * 119.61814 * 179.75157 * 24 23 22 44 44 H 1.07990 * 119.61822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5376 -2.1420 -1.2494 7 8 2.3227 -3.0603 -1.2495 8 8 0.2179 -2.3872 -1.2493 9 6 -0.1939 -3.7796 -1.2500 10 6 -1.7218 -3.8596 -1.2492 11 6 -2.1556 -5.3268 -1.2493 12 16 -3.9631 -5.4215 -1.2476 13 6 -4.1779 -7.1704 -1.2488 14 1 -3.3154 -7.8204 -1.2497 15 6 -5.4556 -7.7127 -1.2474 16 7 -6.5068 -6.9205 -1.2457 17 14 -5.6832 -9.5668 -1.2479 18 1 -4.3540 -10.2287 -1.2505 19 1 -6.4369 -9.9733 -0.0347 20 1 -6.4400 -9.9721 -2.4597 21 6 3.5469 -0.7218 -1.2490 22 6 4.2495 -0.1290 -2.2874 23 6 5.6349 -0.1495 -2.2428 24 6 6.2655 -0.7652 -1.1780 25 7 5.5650 -1.3234 -0.2103 26 6 4.2462 -1.3176 -0.2168 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 0.1958 -4.2733 -2.1403 35 1 0.1960 -4.2742 -0.3603 36 1 -2.1110 -3.3661 -0.3588 37 1 -2.1119 -3.3649 -2.1387 38 1 -1.7664 -5.8208 -2.1395 39 1 -1.7654 -5.8211 -0.3596 40 1 -7.3997 -7.2995 -1.2452 41 1 3.7297 0.3410 -3.1091 42 1 6.2142 0.3057 -3.0326 43 1 7.3445 -0.7891 -1.1379 44 1 3.7064 -1.7854 0.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805555949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:13 Heat of formation + Delta-G solvation = -94.882736 kcal Electronic energy + Delta-G solvation = -24229.858089 eV Core-core repulsion = 20657.976191 eV Total energy + Delta-G solvation = -3571.881898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.16018 -40.85339 -38.03550 -37.41089 -34.88110 -34.58677 -33.51112 -32.39785 -29.38847 -28.00744 -27.86440 -27.21482 -24.65975 -23.88110 -22.84044 -22.35749 -20.97052 -19.58764 -18.83328 -18.10434 -18.03345 -17.60576 -16.92005 -16.91011 -16.37713 -16.10019 -16.03981 -15.24583 -15.15215 -14.77882 -14.43862 -14.37282 -14.20103 -13.98206 -13.82218 -13.66606 -13.46645 -13.15601 -12.98485 -12.97112 -12.89282 -12.66091 -12.49020 -12.39020 -11.93381 -11.82466 -11.73730 -11.62531 -11.39894 -11.33235 -11.16923 -10.74020 -10.41737 -10.36874 -9.95502 -8.68521 -8.39387 -6.15419 0.08260 0.34130 1.08467 1.27451 1.37572 1.43167 1.52873 1.84865 2.25842 2.85374 2.95186 3.25847 3.28627 3.49430 3.64480 3.76243 3.84216 3.91148 3.98425 4.04360 4.06355 4.15021 4.19233 4.31317 4.35053 4.46068 4.51497 4.63696 4.67564 4.67802 4.81549 4.88496 5.01776 5.03612 5.06227 5.14710 5.16843 5.22267 5.25620 5.39106 5.40353 5.42222 5.60052 5.75773 6.16921 6.64496 7.01665 7.03451 8.70106 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.002091 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.701183 B =13389.672873 C =14112.366796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.024 4.024 5 H 0.145 0.855 6 C 0.464 3.536 7 O -0.534 6.534 8 O -0.339 6.339 9 C 0.076 3.924 10 C -0.083 4.083 11 C -0.093 4.093 12 S -0.182 6.182 13 C -0.540 4.540 14 H 0.072 0.928 15 C 0.016 3.984 16 N -0.905 5.905 17 Si 0.994 3.006 18 H -0.264 1.264 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.130 4.130 22 C -0.066 4.066 23 C -0.167 4.167 24 C 0.084 3.916 25 N -0.519 5.519 26 C 0.111 3.889 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.272 0.728 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.177 0.823 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.441 19.971 -1.655 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.044 4.044 5 H 0.162 0.838 6 C 0.308 3.692 7 O -0.424 6.424 8 O -0.256 6.256 9 C 0.001 3.999 10 C -0.122 4.122 11 C -0.242 4.242 12 S 0.047 5.953 13 C -0.688 4.688 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.542 5.542 17 Si 0.816 3.184 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.132 4.132 22 C -0.091 4.091 23 C -0.186 4.186 24 C -0.072 4.072 25 N -0.228 5.228 26 C -0.046 4.046 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.194 0.806 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.107 20.102 -0.952 29.896 hybrid contribution 0.086 -2.208 -0.497 2.265 sum 22.193 17.894 -1.448 28.545 Atomic orbital electron populations 1.22114 0.93282 1.03341 1.03025 1.21098 0.97054 0.97307 0.94376 1.21770 1.00617 0.93600 1.03451 1.20190 0.91143 0.88504 1.04537 0.83785 1.24120 0.80470 0.93145 0.71450 1.90696 1.57389 1.47947 1.46323 1.86597 1.25296 1.30526 1.83157 1.23022 0.95031 0.79201 1.02654 1.21088 0.92284 0.94218 1.04583 1.23078 0.98315 0.99311 1.03457 1.84588 1.02395 1.11275 1.97041 1.23077 0.95572 0.91235 1.58896 0.90949 1.26050 0.94501 1.04618 0.93765 1.70145 0.98839 1.37292 1.47909 0.84974 0.78607 0.76496 0.78339 1.18846 1.19635 1.19615 1.20323 0.94540 1.01251 0.97054 1.21884 0.94787 0.95567 0.96894 1.22491 0.95173 1.00637 1.00339 1.23319 1.01598 0.92707 0.89613 1.67678 1.08516 1.17993 1.28600 1.22440 0.90032 0.94772 0.97353 0.91148 0.91823 0.91601 0.91542 0.91430 0.93156 0.90727 0.91181 0.91224 0.90078 0.90048 0.91555 0.91593 0.91886 0.81649 0.81251 0.80593 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.67 71.98 0.62 -1.76 16 2 C -0.08 -1.11 2.32 -10.79 -0.03 -1.13 16 3 C -0.14 -1.40 8.95 71.98 0.64 -0.76 16 4 C -0.02 -0.38 2.11 -12.29 -0.03 -0.41 16 5 H 0.14 1.50 7.93 -2.39 -0.02 1.48 16 6 C 0.46 10.86 7.07 71.23 0.50 11.37 16 7 O -0.53 -16.15 14.87 21.98 0.33 -15.82 16 8 O -0.34 -8.17 7.14 -51.45 -0.37 -8.54 16 9 C 0.08 2.06 5.47 71.98 0.39 2.45 16 10 C -0.08 -2.56 5.60 30.59 0.17 -2.39 16 11 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16 12 S -0.18 -9.48 21.44 -56.49 -1.21 -10.69 16 13 C -0.54 -30.99 9.50 67.95 0.65 -30.35 16 14 H 0.07 4.03 7.80 -2.91 -0.02 4.00 16 15 C 0.02 0.89 5.49 84.86 0.47 1.36 16 16 N -0.91 -54.14 13.22 21.65 0.29 -53.85 16 17 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 C -0.13 -2.23 3.14 -19.77 -0.06 -2.29 16 22 C -0.07 -0.81 9.81 22.47 0.22 -0.59 16 23 C -0.17 -1.88 10.11 22.36 0.23 -1.66 16 24 C 0.08 1.32 11.18 84.69 0.95 2.27 16 25 N -0.52 -11.82 10.36 -195.85 -2.03 -13.85 16 26 C 0.11 2.45 9.13 84.67 0.77 3.22 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.22 5.33 -2.39 -0.01 1.21 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.07 7.41 -2.39 -0.02 1.05 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.58 7.22 -2.39 -0.02 0.56 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 35 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.17 0.96 8.00 -2.92 -0.02 0.94 16 42 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.14 3.15 7.53 -2.92 -0.02 3.13 16 Total: -1.00 -73.08 379.17 5.92 -67.16 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.97 Total: 13.58 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 5.91 Total: -23.88 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.74 Total: -67.70 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.04 Total: -24.36 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.21 Total: -10.69 kcal Total: -73.08 5.92 -67.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805555949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -73.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds