Wall clock time and date at job start Tue Mar 31 2020 14:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47347 * 2 1 4 4 C 1.53003 * 109.47195 * 239.99329 * 2 1 3 5 5 C 1.50698 * 109.46817 * 60.00353 * 4 2 1 6 6 H 1.08001 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99725 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47377 * 89.99743 * 9 7 5 11 11 H 1.48499 * 109.47456 * 209.99770 * 9 7 5 12 12 H 1.48504 * 109.47103 * 329.99740 * 9 7 5 13 13 C 1.53004 * 109.46898 * 119.99653 * 2 1 3 14 14 N 1.46509 * 109.47112 * 299.99935 * 13 2 1 15 15 C 1.39664 * 119.99905 * 179.97438 * 14 13 2 16 16 C 1.38933 * 120.07762 * 354.14046 * 15 14 13 17 17 C 1.38087 * 119.92503 * 180.02562 * 16 15 14 18 18 C 1.38297 * 120.07434 * 359.97438 * 17 16 15 19 19 N 1.48025 * 119.92609 * 180.02562 * 18 17 16 20 20 O 1.21804 * 119.99648 * 0.02562 * 19 18 17 21 21 O 1.21803 * 120.00336 * 180.02562 * 19 18 17 22 22 C 1.38271 * 120.15499 * 0.02562 * 18 17 16 23 23 C 1.38122 * 120.07034 * 359.72487 * 22 18 17 24 24 N 1.48015 * 120.03966 * 180.29424 * 23 22 18 25 25 O 1.21802 * 120.00001 * 142.57521 * 24 23 22 26 26 O 1.21801 * 120.00106 * 322.57526 * 24 23 22 27 27 H 1.09004 * 109.46889 * 300.00761 * 1 2 3 28 28 H 1.08999 * 109.46671 * 60.00517 * 1 2 3 29 29 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46812 * 299.99396 * 3 2 1 32 32 H 1.08998 * 109.47371 * 59.99576 * 3 2 1 33 33 H 1.08998 * 109.46848 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47291 * 300.00510 * 4 2 1 35 35 H 0.96998 * 120.00409 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46998 * 59.99851 * 13 2 1 37 37 H 1.08998 * 109.47363 * 180.02562 * 13 2 1 38 38 H 0.96996 * 119.99591 * 359.97438 * 14 13 2 39 39 H 1.08003 * 120.03576 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.95735 * 179.97438 * 17 16 15 41 41 H 1.07997 * 119.96274 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3807 7 6 1.8704 -0.4825 -3.7318 8 7 2.6265 -1.5518 -3.8525 9 14 1.2484 0.3984 -5.2572 10 1 2.2274 1.4392 -5.6615 11 1 1.0826 -0.5807 -6.3613 12 1 -0.0593 1.0369 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8885 -0.5079 3.7140 16 6 2.5831 -1.7038 3.8461 17 6 2.9142 -2.1732 5.1018 18 6 2.5555 -1.4540 6.2273 19 7 2.9126 -1.9599 7.5718 20 8 3.5220 -3.0083 7.6859 21 8 2.5970 -1.3278 8.5640 22 6 1.8642 -0.2633 6.0996 23 6 1.5344 0.2145 4.8463 24 7 0.8000 1.4924 4.7102 25 8 1.0637 2.2518 3.7951 26 8 -0.0680 1.7845 5.5132 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7218 -1.2489 34 1 1.6766 -1.7490 -1.2491 35 1 2.8608 -1.8833 -4.7334 36 1 1.6766 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2496 38 1 0.9943 0.7584 2.3564 39 1 2.8639 -2.2658 2.9675 40 1 3.4538 -3.1030 5.2051 41 1 1.5853 0.2956 6.9806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808092827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:12 Heat of formation + Delta-G solvation = 8.508410 kcal Electronic energy + Delta-G solvation = -27226.938088 eV Core-core repulsion = 23113.246352 eV Total energy + Delta-G solvation = -4113.691736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.73590 -42.31870 -40.26598 -38.16536 -36.88627 -36.81291 -35.18834 -32.79131 -32.51800 -30.90039 -27.53622 -27.18848 -26.93522 -26.76854 -25.67888 -23.64982 -22.86146 -22.19150 -20.43791 -19.38210 -18.92498 -18.67740 -18.08320 -18.01977 -17.80792 -17.67971 -16.63091 -16.11211 -15.23306 -15.13681 -14.81949 -14.66815 -14.08660 -13.95722 -13.37172 -13.09857 -12.80951 -12.78326 -12.24518 -11.92901 -11.83015 -11.65555 -11.57607 -11.44932 -11.40800 -11.39766 -11.20418 -11.06746 -11.01723 -10.83251 -10.73010 -10.44910 -10.39975 -10.12047 -9.49566 -9.18308 -8.56968 -8.53411 -6.18337 -4.20247 -0.49275 -0.43656 0.61599 0.78473 0.97725 1.23352 2.53311 2.56065 3.20219 3.28020 3.29780 3.58306 3.90217 3.96197 4.05619 4.30632 4.51030 4.73203 4.87178 5.03676 5.07123 5.08491 5.19821 5.36931 5.42819 5.63362 5.77904 5.89848 5.92466 6.04483 6.08777 6.23870 6.38405 6.42225 6.74590 6.81221 6.85218 6.88115 7.26179 7.36362 7.36578 7.46580 7.78928 8.19038 8.83712 9.44508 10.92985 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002795 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.125889 B =10015.543568 C =11113.844786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.133 4.133 4 C 0.039 3.961 5 C -0.516 4.516 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.109 3.891 14 N -0.683 5.683 15 C 0.320 3.680 16 C -0.189 4.189 17 C 0.031 3.969 18 C -0.115 4.115 19 N 0.043 4.957 20 O -0.161 6.161 21 O -0.169 6.169 22 C 0.059 3.941 23 C -0.132 4.132 24 N 0.037 4.963 25 O -0.163 6.163 26 O -0.140 6.140 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.418 0.582 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -0.238 16.568 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.072 4.072 3 C -0.191 4.191 4 C 0.001 3.999 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.013 4.013 14 N -0.304 5.304 15 C 0.198 3.802 16 C -0.213 4.213 17 C 0.010 3.990 18 C -0.203 4.203 19 N 0.561 4.439 20 O -0.376 6.376 21 O -0.382 6.382 22 C 0.038 3.962 23 C -0.222 4.222 24 N 0.557 4.443 25 O -0.373 6.373 26 O -0.361 6.361 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.261 0.739 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.040 -0.750 15.539 15.557 hybrid contribution -0.590 0.913 -0.637 1.260 sum -0.550 0.164 14.902 14.913 Atomic orbital electron populations 1.21809 0.94946 1.01301 1.00775 1.20950 0.95748 0.96340 0.94113 1.21822 1.00686 0.95379 1.01178 1.19096 0.96385 0.95136 0.89276 1.21128 1.31639 1.12260 0.90346 0.92130 1.24991 0.95130 0.94991 0.99186 1.69937 1.36751 1.22920 1.23729 0.86621 0.79300 0.79457 0.82821 1.20626 1.21233 1.19855 1.22257 0.99624 0.96614 0.82834 1.46210 1.50216 1.31495 1.02499 1.17889 0.87000 0.90586 0.84686 1.20798 1.05805 0.95959 0.98689 1.21052 0.90628 0.98160 0.89188 1.20346 1.16019 1.00385 0.83535 1.43247 0.98259 1.00032 1.02405 1.94550 1.39135 1.10929 1.92958 1.94564 1.57721 1.58118 1.27792 1.20239 0.87376 0.91729 0.96826 1.20025 1.16239 0.91510 0.94423 1.43223 0.99642 1.01316 1.00101 1.94556 1.70921 1.46183 1.25658 1.94580 1.23549 1.79768 1.38184 0.95500 0.90684 0.93163 0.93113 0.90907 0.94528 0.96189 0.96279 0.92873 0.90516 0.90249 0.73941 0.81261 0.81449 0.81118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 2 C -0.07 -1.14 0.54 -154.50 -0.08 -1.23 16 3 C -0.13 -2.12 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.52 -12.63 7.65 -34.44 -0.26 -12.89 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 9 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.11 1.35 3.85 -4.03 -0.02 1.33 16 14 N -0.68 -7.81 4.91 -58.63 -0.29 -8.10 16 15 C 0.32 3.26 6.61 -83.79 -0.55 2.71 16 16 C -0.19 -1.51 9.32 -39.38 -0.37 -1.87 16 17 C 0.03 0.23 9.55 -39.62 -0.38 -0.14 16 18 C -0.12 -1.11 6.85 -79.91 -0.55 -1.66 16 19 N 0.04 0.50 4.45 33.98 0.15 0.65 16 20 O -0.16 -1.92 18.44 -29.46 -0.54 -2.46 16 21 O -0.17 -2.11 18.44 -29.46 -0.54 -2.66 16 22 C 0.06 0.57 9.17 -39.61 -0.36 0.21 16 23 C -0.13 -1.43 6.51 -79.75 -0.52 -1.95 16 24 N 0.04 0.47 4.29 34.06 0.15 0.62 16 25 O -0.16 -2.24 16.76 -29.46 -0.49 -2.73 16 26 O -0.14 -1.85 18.95 -29.46 -0.56 -2.41 16 27 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 28 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 32 H 0.04 0.51 6.86 -51.93 -0.36 0.16 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 37 H 0.08 0.94 8.13 -51.93 -0.42 0.51 16 38 H 0.42 5.19 3.78 -40.82 -0.15 5.04 16 39 H 0.17 1.07 6.73 -52.48 -0.35 0.72 16 40 H 0.17 0.93 7.60 -52.49 -0.40 0.53 16 41 H 0.17 1.51 7.56 -52.49 -0.40 1.11 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -27.81 351.07 -8.48 -36.28 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.65 Total: 1.22 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.70 Total: -16.94 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.75 Total: -30.72 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -2.14 Total: -10.26 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.81 -8.48 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808092827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.793 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds