Wall clock time and date at job start Tue Mar 31 2020 14:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47347 * 2 1 4 4 C 1.53003 * 109.47195 * 239.99329 * 2 1 3 5 5 C 1.50698 * 109.46817 * 60.00353 * 4 2 1 6 6 H 1.08001 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99725 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47377 * 89.99743 * 9 7 5 11 11 H 1.48499 * 109.47456 * 209.99770 * 9 7 5 12 12 H 1.48504 * 109.47103 * 329.99740 * 9 7 5 13 13 C 1.53004 * 109.46898 * 119.99653 * 2 1 3 14 14 N 1.46509 * 109.47112 * 299.99935 * 13 2 1 15 15 C 1.39664 * 119.99905 * 179.97438 * 14 13 2 16 16 C 1.38933 * 120.07762 * 354.14046 * 15 14 13 17 17 C 1.38087 * 119.92503 * 180.02562 * 16 15 14 18 18 C 1.38297 * 120.07434 * 359.97438 * 17 16 15 19 19 N 1.48025 * 119.92609 * 180.02562 * 18 17 16 20 20 O 1.21804 * 119.99648 * 0.02562 * 19 18 17 21 21 O 1.21803 * 120.00336 * 180.02562 * 19 18 17 22 22 C 1.38271 * 120.15499 * 0.02562 * 18 17 16 23 23 C 1.38122 * 120.07034 * 359.72487 * 22 18 17 24 24 N 1.48015 * 120.03966 * 180.29424 * 23 22 18 25 25 O 1.21802 * 120.00001 * 142.57521 * 24 23 22 26 26 O 1.21801 * 120.00106 * 322.57526 * 24 23 22 27 27 H 1.09004 * 109.46889 * 300.00761 * 1 2 3 28 28 H 1.08999 * 109.46671 * 60.00517 * 1 2 3 29 29 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46812 * 299.99396 * 3 2 1 32 32 H 1.08998 * 109.47371 * 59.99576 * 3 2 1 33 33 H 1.08998 * 109.46848 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47291 * 300.00510 * 4 2 1 35 35 H 0.96998 * 120.00409 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46998 * 59.99851 * 13 2 1 37 37 H 1.08998 * 109.47363 * 180.02562 * 13 2 1 38 38 H 0.96996 * 119.99591 * 359.97438 * 14 13 2 39 39 H 1.08003 * 120.03576 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.95735 * 179.97438 * 17 16 15 41 41 H 1.07997 * 119.96274 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3807 7 6 1.8704 -0.4825 -3.7318 8 7 2.6265 -1.5518 -3.8525 9 14 1.2484 0.3984 -5.2572 10 1 2.2274 1.4392 -5.6615 11 1 1.0826 -0.5807 -6.3613 12 1 -0.0593 1.0369 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8885 -0.5079 3.7140 16 6 2.5831 -1.7038 3.8461 17 6 2.9142 -2.1732 5.1018 18 6 2.5555 -1.4540 6.2273 19 7 2.9126 -1.9599 7.5718 20 8 3.5220 -3.0083 7.6859 21 8 2.5970 -1.3278 8.5640 22 6 1.8642 -0.2633 6.0996 23 6 1.5344 0.2145 4.8463 24 7 0.8000 1.4924 4.7102 25 8 1.0637 2.2518 3.7951 26 8 -0.0680 1.7845 5.5132 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7218 -1.2489 34 1 1.6766 -1.7490 -1.2491 35 1 2.8608 -1.8833 -4.7334 36 1 1.6766 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2496 38 1 0.9943 0.7584 2.3564 39 1 2.8639 -2.2658 2.9675 40 1 3.4538 -3.1030 5.2051 41 1 1.5853 0.2956 6.9806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808092827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:11 Heat of formation + Delta-G solvation = -4.128040 kcal Electronic energy + Delta-G solvation = -27227.486046 eV Core-core repulsion = 23113.246352 eV Total energy + Delta-G solvation = -4114.239693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.63672 -43.20778 -41.10901 -39.29338 -37.88121 -37.71070 -36.30345 -34.41097 -33.47365 -31.83610 -29.12888 -28.19438 -28.06518 -27.95259 -26.64696 -25.03296 -23.87893 -23.16695 -21.31790 -20.33999 -19.94393 -19.62682 -19.13279 -18.94954 -18.65368 -18.53199 -18.36142 -17.12072 -16.55148 -16.17497 -15.89247 -15.69742 -15.01525 -14.98466 -14.67244 -14.34341 -14.02375 -13.98781 -13.58014 -13.02177 -12.93191 -12.80263 -12.74408 -12.74078 -12.51263 -12.46785 -12.38868 -12.35833 -12.32397 -12.24373 -12.04808 -12.01232 -11.51318 -11.11102 -11.08217 -10.91934 -10.51400 -9.40567 -8.16722 -6.21890 -1.32466 -1.31679 -0.23234 -0.07589 0.12302 0.38786 1.39896 1.42589 1.50283 1.66894 1.80421 2.42627 2.82260 3.15543 3.19283 3.21203 3.33325 3.72088 3.74999 3.96833 4.01666 4.14400 4.34725 4.42510 4.53945 4.57807 4.62239 4.78409 4.85123 4.94733 5.04614 5.05407 5.17467 5.32950 5.44334 5.47107 5.47950 5.53602 5.75044 5.88384 5.92024 6.24471 6.30994 6.43184 6.92367 7.45724 8.94812 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002795 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.125889 B =10015.543568 C =11113.844786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 C -0.128 4.128 4 C 0.044 3.956 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.119 3.881 14 N -0.687 5.687 15 C 0.318 3.682 16 C -0.177 4.177 17 C 0.046 3.954 18 C -0.114 4.114 19 N 0.044 4.956 20 O -0.157 6.157 21 O -0.199 6.199 22 C 0.061 3.939 23 C -0.137 4.137 24 N 0.040 4.960 25 O -0.183 6.183 26 O -0.152 6.152 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.000 1.000 34 H 0.001 0.999 35 H 0.260 0.740 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.414 0.586 39 H 0.193 0.807 40 H 0.196 0.804 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -0.765 17.325 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.066 4.066 3 C -0.186 4.186 4 C 0.007 3.993 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.003 4.003 14 N -0.309 5.309 15 C 0.197 3.803 16 C -0.200 4.200 17 C 0.025 3.975 18 C -0.202 4.202 19 N 0.558 4.442 20 O -0.375 6.375 21 O -0.405 6.405 22 C 0.040 3.960 23 C -0.227 4.227 24 N 0.556 4.444 25 O -0.391 6.391 26 O -0.372 6.372 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.255 0.745 39 H 0.210 0.790 40 H 0.213 0.787 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.116 -1.216 16.343 16.389 hybrid contribution -0.596 1.023 -0.821 1.441 sum -0.480 -0.193 15.522 15.531 Atomic orbital electron populations 1.21735 0.94578 1.01336 1.00754 1.20715 0.95960 0.96147 0.93759 1.21750 1.00511 0.95250 1.01065 1.18935 0.94959 0.94424 0.91001 1.21578 1.30459 1.11964 0.91500 0.91887 1.25737 0.95718 0.95780 1.02085 1.70045 1.38542 1.24539 1.24078 0.85734 0.79012 0.78344 0.79693 1.20417 1.21451 1.19087 1.22001 1.00130 0.96647 0.81507 1.46004 1.50786 1.31543 1.02609 1.18059 0.87233 0.91191 0.83786 1.21061 1.04463 0.94905 0.99554 1.21363 0.89502 0.98541 0.88108 1.20443 1.16198 1.00528 0.83030 1.43464 0.97955 0.99856 1.02915 1.94534 1.38794 1.10964 1.93205 1.94574 1.58819 1.58493 1.28657 1.20272 0.87150 0.91883 0.96664 1.20037 1.16773 0.90796 0.95075 1.43454 0.99492 1.01773 0.99689 1.94545 1.71340 1.47031 1.26134 1.94570 1.24063 1.80277 1.38286 0.93265 0.92931 0.93083 0.93300 0.93073 0.92527 0.98187 0.98100 0.93115 0.89030 0.89219 0.74507 0.78973 0.78717 0.80714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.05 71.98 0.58 -3.25 16 2 C -0.07 -2.03 0.54 -52.18 -0.03 -2.06 16 3 C -0.13 -3.96 8.05 71.98 0.58 -3.38 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.52 -25.43 7.65 25.60 0.20 -25.23 16 6 H 0.06 3.01 5.68 -2.91 -0.02 3.00 16 7 C 0.00 0.23 5.46 84.65 0.46 0.70 16 8 N -0.93 -51.96 13.29 21.45 0.28 -51.68 16 9 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 C 0.12 2.66 3.85 86.38 0.33 3.00 16 14 N -0.69 -13.98 4.91 -339.39 -1.67 -15.64 16 15 C 0.32 5.57 6.61 38.22 0.25 5.82 16 16 C -0.18 -2.12 9.32 22.40 0.21 -1.91 16 17 C 0.05 0.52 9.55 22.25 0.21 0.73 16 18 C -0.11 -1.90 6.85 36.40 0.25 -1.65 16 19 N 0.04 0.93 4.45 -46.40 -0.21 0.72 16 20 O -0.16 -3.39 18.44 18.88 0.35 -3.04 16 21 O -0.20 -4.80 18.44 18.88 0.35 -4.45 16 22 C 0.06 1.07 9.17 22.25 0.20 1.27 16 23 C -0.14 -2.69 6.51 36.51 0.24 -2.46 16 24 N 0.04 0.96 4.29 -46.15 -0.20 0.76 16 25 O -0.18 -4.87 16.76 18.88 0.32 -4.55 16 26 O -0.15 -3.91 18.95 18.89 0.36 -3.55 16 27 H 0.05 1.26 6.86 -2.38 -0.02 1.24 16 28 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 32 H 0.06 1.51 6.86 -2.39 -0.02 1.50 16 33 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.09 1.80 7.73 -2.39 -0.02 1.78 16 37 H 0.09 1.85 8.13 -2.39 -0.02 1.83 16 38 H 0.41 9.39 3.78 -92.71 -0.35 9.04 16 39 H 0.19 1.51 6.73 -2.91 -0.02 1.49 16 40 H 0.20 1.23 7.60 -2.91 -0.02 1.21 16 41 H 0.18 2.90 7.56 -2.91 -0.02 2.88 16 Total: -1.00 -60.48 351.07 5.96 -54.52 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.74 Total: 9.80 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 3.61 Total: -26.40 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -1.79 Total: -65.84 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 1.37 Total: -15.60 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -60.48 5.96 -54.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808092827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.392 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds