Wall clock time and date at job start Tue Mar 31 2020 14:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47114 * 2 1 4 4 C 1.53007 * 109.47062 * 239.99762 * 2 1 3 5 5 C 1.50700 * 109.46730 * 60.00255 * 4 2 1 6 6 H 1.07999 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99622 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00205 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47302 * 90.00219 * 9 7 5 11 11 H 1.48496 * 109.47003 * 210.00410 * 9 7 5 12 12 H 1.48499 * 109.46949 * 330.00056 * 9 7 5 13 13 C 1.53000 * 109.47018 * 120.00254 * 2 1 3 14 14 N 1.46900 * 109.47183 * 299.99861 * 13 2 1 15 15 C 1.39673 * 111.00197 * 178.65513 * 14 13 2 16 16 C 1.38915 * 120.07373 * 83.35839 * 15 14 13 17 17 N 1.48023 * 120.04075 * 359.97438 * 16 15 14 18 18 O 1.21805 * 119.99926 * 174.75091 * 17 16 15 19 19 O 1.21804 * 119.99807 * 354.75329 * 17 16 15 20 20 C 1.38104 * 119.92202 * 180.27704 * 16 15 14 21 21 C 1.38287 * 120.07684 * 359.44528 * 20 16 15 22 22 C 1.38289 * 120.14635 * 0.30267 * 21 20 16 23 23 C 1.38104 * 120.07436 * 359.97438 * 22 21 20 24 24 N 1.48023 * 120.03327 * 180.02562 * 23 22 21 25 25 O 1.21799 * 120.00415 * 355.86977 * 24 23 22 26 26 O 1.21801 * 119.99805 * 175.86460 * 24 23 22 27 27 H 1.09002 * 109.46818 * 299.99507 * 1 2 3 28 28 H 1.08992 * 109.47059 * 60.00200 * 1 2 3 29 29 H 1.09004 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47147 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47410 * 299.99925 * 3 2 1 32 32 H 1.09005 * 109.47346 * 60.00344 * 3 2 1 33 33 H 1.09003 * 109.46951 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.46922 * 300.00225 * 4 2 1 35 35 H 0.97002 * 119.99886 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47096 * 180.02562 * 13 2 1 37 37 H 1.08995 * 109.47561 * 59.99994 * 13 2 1 38 38 H 1.00905 * 111.00079 * 302.60728 * 14 13 2 39 39 H 1.08007 * 119.96022 * 179.72607 * 20 16 15 40 40 H 1.07998 * 119.92903 * 180.27373 * 21 20 16 41 41 H 1.07997 * 119.95703 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6281 -1.5504 -3.8526 9 14 1.2479 0.3986 -5.2572 10 1 2.2253 1.4410 -5.6613 11 1 1.0836 -0.5806 -6.3614 12 1 -0.0607 1.0351 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0289 2.4487 15 6 1.9730 -0.6797 3.6100 16 6 3.2373 -0.4286 4.1278 17 7 4.1393 0.5290 3.4491 18 8 5.2086 0.8211 3.9540 19 8 3.8122 1.0248 2.3857 20 6 3.6542 -1.0781 5.2730 21 6 2.8103 -1.9690 5.9107 22 6 1.5491 -2.2172 5.4008 23 6 1.1280 -1.5754 4.2527 24 7 -0.2224 -1.8414 3.7081 25 8 -0.9344 -2.6816 4.2284 26 8 -0.6217 -1.2200 2.7396 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 2.8624 -1.8818 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2492 38 1 1.8384 0.9382 2.4509 39 1 4.6388 -0.8867 5.6737 40 1 3.1371 -2.4723 6.8086 41 1 0.8927 -2.9138 5.9010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808094062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:14 Heat of formation + Delta-G solvation = 16.794420 kcal Electronic energy + Delta-G solvation = -28656.367899 eV Core-core repulsion = 24543.035472 eV Total energy + Delta-G solvation = -4113.332427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.74845 -43.12880 -40.99386 -39.29116 -37.89085 -37.55012 -36.08608 -34.32272 -33.77520 -31.49241 -28.99785 -28.01812 -27.85816 -27.78147 -26.74151 -24.76556 -23.79830 -23.26571 -21.08489 -20.11184 -19.89730 -19.41867 -19.08392 -18.83113 -18.51114 -18.37952 -18.31534 -17.26603 -16.56741 -16.33560 -15.99313 -15.51268 -14.79735 -14.55341 -14.43233 -13.97466 -13.89163 -13.82714 -13.70021 -12.94771 -12.86379 -12.68555 -12.64806 -12.58182 -12.52890 -12.39710 -12.22941 -12.19756 -12.14505 -12.10915 -11.93263 -11.40307 -11.33786 -11.10622 -10.89968 -10.65970 -10.50207 -9.95181 -8.13789 -6.20462 -1.64378 -1.37513 -0.18199 -0.11081 0.13211 0.39761 1.41931 1.42816 1.53726 1.72493 2.32646 2.46003 2.82725 3.06814 3.20622 3.39047 3.45520 3.53806 3.90321 4.01885 4.16332 4.30333 4.41709 4.51222 4.54007 4.65264 4.82576 4.87214 4.98623 5.12183 5.16046 5.24925 5.30371 5.45175 5.52101 5.54661 5.59192 5.66375 5.78331 5.90537 5.91503 6.23468 6.34478 6.54161 6.93177 7.46696 8.99010 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.004071 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.215597 B = 6876.926435 C = 8057.821281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.047 4.047 3 C -0.113 4.113 4 C 0.044 3.956 5 C -0.512 4.512 6 H 0.068 0.932 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.111 3.889 14 N -0.635 5.635 15 C 0.219 3.781 16 C -0.111 4.111 17 N 0.031 4.969 18 O -0.120 6.120 19 O -0.206 6.206 20 C 0.017 3.983 21 C -0.095 4.095 22 C 0.014 3.986 23 C -0.064 4.064 24 N 0.028 4.972 25 O -0.175 6.175 26 O -0.138 6.138 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.058 0.942 33 H -0.016 1.016 34 H -0.018 1.018 35 H 0.259 0.741 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.374 0.626 39 H 0.201 0.799 40 H 0.228 0.772 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -0.825 27.397 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.047 4.047 3 C -0.171 4.171 4 C 0.006 3.994 5 C -0.550 4.550 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.186 1.186 13 C -0.014 4.014 14 N -0.271 5.271 15 C 0.117 3.883 16 C -0.198 4.198 17 N 0.546 4.454 18 O -0.348 6.348 19 O -0.405 6.405 20 C -0.003 4.003 21 C -0.114 4.114 22 C -0.005 4.005 23 C -0.150 4.150 24 N 0.546 4.454 25 O -0.386 6.386 26 O -0.358 6.358 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.205 0.795 39 H 0.218 0.782 40 H 0.244 0.756 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.407 -1.500 27.685 27.761 hybrid contribution 0.590 0.675 -1.880 2.083 sum 1.997 -0.824 25.806 25.896 Atomic orbital electron populations 1.21465 0.93545 1.00268 1.00572 1.20434 0.96631 0.95800 0.91877 1.21596 0.99919 0.94898 1.00658 1.18964 0.93902 0.93932 0.92568 1.21575 1.30212 1.11981 0.91203 0.91381 1.25913 0.95644 0.95864 1.02570 1.70112 1.38918 1.25004 1.24024 0.85551 0.79156 0.78216 0.78791 1.20003 1.21233 1.18641 1.21757 0.96085 0.96265 0.87309 1.58143 1.61859 1.08104 0.98976 1.18507 0.88053 0.89882 0.91902 1.21897 0.91703 1.03767 1.02463 1.43627 1.01161 1.00270 1.00300 1.94498 1.09663 1.63552 1.67039 1.94632 1.79666 1.56488 1.09695 1.22024 1.02868 0.88107 0.87256 1.21880 0.90058 0.97054 1.02384 1.22059 0.97643 0.92438 0.88338 1.21181 0.84983 1.07675 1.01111 1.43502 1.02428 0.99279 1.00174 1.94482 1.54343 1.27854 1.61876 1.94752 1.77286 1.48053 1.15681 0.91343 0.94043 0.95209 0.93926 0.93113 0.92362 0.99795 0.99963 0.93182 0.95141 0.93257 0.79546 0.78225 0.75591 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.20 7.43 71.98 0.53 -3.66 16 2 C -0.05 -2.00 0.60 -52.18 -0.03 -2.04 16 3 C -0.11 -4.49 7.10 71.98 0.51 -3.98 16 4 C 0.04 2.38 4.04 29.85 0.12 2.50 16 5 C -0.51 -29.24 7.65 25.60 0.20 -29.04 16 6 H 0.07 3.73 5.68 -2.91 -0.02 3.71 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 8 N -0.94 -58.75 13.29 21.45 0.28 -58.46 16 9 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.11 4.13 3.66 86.30 0.32 4.45 16 14 N -0.63 -19.36 3.34 -338.55 -1.13 -20.49 16 15 C 0.22 5.26 5.27 38.21 0.20 5.46 16 16 C -0.11 -2.16 6.83 36.50 0.25 -1.91 16 17 N 0.03 0.79 4.45 -46.15 -0.21 0.58 16 18 O -0.12 -2.88 18.46 18.88 0.35 -2.54 16 19 O -0.21 -6.54 12.43 18.88 0.23 -6.30 16 20 C 0.02 0.13 9.55 22.25 0.21 0.35 16 21 C -0.10 -0.21 10.04 22.29 0.22 0.02 16 22 C 0.01 0.13 9.55 22.25 0.21 0.34 16 23 C -0.06 -1.32 6.86 36.50 0.25 -1.07 16 24 N 0.03 0.77 4.45 -46.15 -0.21 0.57 16 25 O -0.17 -4.71 18.46 18.89 0.35 -4.36 16 26 O -0.14 -4.73 15.71 18.89 0.30 -4.43 16 27 H 0.07 2.55 7.01 -2.39 -0.02 2.53 16 28 H 0.04 1.80 6.62 -2.39 -0.02 1.78 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.04 1.73 7.50 -2.39 -0.02 1.71 16 31 H 0.05 2.12 6.62 -2.39 -0.02 2.11 16 32 H 0.06 1.96 6.60 -2.38 -0.02 1.95 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.03 1.18 6.61 -2.39 -0.02 1.17 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.37 11.34 4.56 -89.69 -0.41 10.93 16 39 H 0.20 0.44 7.62 -2.91 -0.02 0.42 16 40 H 0.23 -1.92 8.06 -2.91 -0.02 -1.94 16 41 H 0.20 0.68 7.61 -2.91 -0.02 0.66 16 Total: -1.00 -77.48 340.86 6.14 -71.34 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.68 Total: 4.71 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.46 Total: -28.32 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.26 Total: -77.80 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 1.23 Total: -17.63 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.48 6.14 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808094062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.133 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds