Wall clock time and date at job start Tue Mar 31 2020 13:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47219 * 316.13137 * 3 2 1 5 5 O 1.45204 * 112.90725 * 316.44354 * 4 3 2 6 6 C 1.34860 * 116.99942 * 71.40244 * 5 4 3 7 7 O 1.21598 * 120.00253 * 6.97820 * 6 5 4 8 8 C 1.46711 * 119.99838 * 186.98575 * 6 5 4 9 9 C 1.36224 * 125.44964 * 174.83311 * 8 6 5 10 10 C 1.41652 * 107.74261 * 180.02562 * 9 8 6 11 11 C 1.40044 * 133.33886 * 180.02562 * 10 9 8 12 12 C 1.36562 * 119.83403 * 179.97438 * 11 10 9 13 13 C 1.38864 * 120.60187 * 359.97438 * 12 11 10 14 14 C 1.37840 * 120.63693 * 0.04309 * 13 12 11 15 15 C 1.39096 * 119.81551 * 359.96126 * 14 13 12 16 16 N 1.37821 * 133.14978 * 180.40841 * 15 14 13 17 17 C 1.36874 * 125.62333 * 359.93299 * 16 15 14 18 18 H 1.07999 * 119.99997 * 225.10059 * 17 16 15 19 19 C 1.39019 * 119.99732 * 45.09345 * 17 16 15 20 20 N 1.31346 * 120.00377 * 7.59348 * 19 17 16 21 21 Si 1.86803 * 119.99854 * 187.58415 * 19 17 16 22 22 H 1.48500 * 109.47223 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46878 * 120.00396 * 21 19 17 24 24 H 1.48498 * 109.47291 * 240.00124 * 21 19 17 25 25 C 1.53782 * 113.61514 * 185.18818 * 4 3 2 26 26 C 1.53781 * 87.08080 * 220.01999 * 25 4 3 27 27 C 1.53778 * 113.61369 * 87.69238 * 4 3 2 28 28 H 4.44651 * 5.63328 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.47226 * 196.13434 * 3 2 1 30 30 H 1.08999 * 109.47541 * 76.12976 * 3 2 1 31 31 H 1.08001 * 126.12641 * 0.02562 * 9 8 6 32 32 H 1.08005 * 120.08467 * 359.96871 * 11 10 9 33 33 H 1.07999 * 119.70558 * 179.97438 * 12 11 10 34 34 H 1.08004 * 119.68240 * 180.02562 * 13 12 11 35 35 H 1.08004 * 120.09699 * 179.97438 * 14 13 12 36 36 H 0.96998 * 120.00114 * 184.99025 * 20 19 17 37 37 H 1.09001 * 113.61114 * 105.47456 * 25 4 3 38 38 H 1.08993 * 113.68980 * 334.57957 * 25 4 3 39 39 H 1.08997 * 113.61266 * 139.98339 * 26 25 4 40 40 H 1.09000 * 113.61756 * 270.88508 * 26 25 4 41 41 H 1.09007 * 113.61561 * 25.43371 * 27 4 3 42 42 H 1.08999 * 113.61705 * 254.53220 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0391 0.9997 5 8 2.4310 -1.0178 2.2573 6 6 1.1659 -1.4846 2.2423 7 8 0.7250 -2.0141 1.2404 8 6 0.3214 -1.3535 3.4348 9 6 -0.9956 -1.6929 3.5115 10 6 -1.4377 -1.4125 4.8278 11 6 -2.6698 -1.5537 5.4784 12 6 -2.7922 -1.1876 6.7883 13 6 -1.7047 -0.6759 7.4839 14 6 -0.4820 -0.5272 6.8652 15 6 -0.3327 -0.8931 5.5316 16 7 0.7365 -0.8710 4.6622 17 6 2.0000 -0.4393 4.9631 18 1 2.5268 0.2084 4.2781 19 6 2.6051 -0.8345 6.1507 20 7 2.0301 -1.7372 6.9121 21 14 4.2361 -0.0820 6.6634 22 1 4.6702 0.9031 5.6404 23 1 4.0762 0.6017 7.9719 24 1 5.2584 -1.1522 6.7858 25 6 4.6848 -1.0316 1.1699 26 6 4.6087 -2.5669 1.2133 27 6 3.3089 -2.4470 0.4003 28 1 -1.0499 -0.0001 0.0003 29 1 3.0089 0.9880 0.2856 30 1 3.0095 -0.2455 -0.9977 31 1 -1.5952 -2.1024 2.7121 32 1 -3.5211 -1.9510 4.9455 33 1 -3.7434 -1.2969 7.2879 34 1 -1.8181 -0.3915 8.5197 35 1 0.3579 -0.1280 7.4145 36 1 2.4143 -1.9603 7.7744 37 1 5.0176 -0.5843 2.1065 38 1 5.2201 -0.6453 0.3026 39 1 5.4175 -3.0595 0.6736 40 1 4.4612 -2.9686 2.2157 41 1 3.4669 -2.4477 -0.6783 42 1 2.5310 -3.1424 0.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810751133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:15 Heat of formation + Delta-G solvation = 63.365047 kcal Electronic energy + Delta-G solvation = -27788.869743 eV Core-core repulsion = 24088.406033 eV Total energy + Delta-G solvation = -3700.463710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73320 -40.03161 -37.61975 -35.91574 -34.88807 -33.54899 -33.36185 -30.70683 -29.12200 -28.88001 -28.12241 -25.65725 -24.90502 -24.25638 -22.74583 -21.00651 -20.62907 -19.43060 -18.73764 -17.96009 -17.83351 -16.66010 -15.97088 -15.83492 -15.44632 -14.82373 -14.70596 -14.59975 -14.13794 -14.03449 -13.57155 -13.32962 -13.05135 -12.97299 -12.80115 -12.31259 -12.17494 -11.93281 -11.69695 -11.43894 -11.36588 -11.27608 -11.17767 -10.86316 -10.75870 -10.59347 -10.55081 -10.35450 -10.17767 -9.78942 -9.72044 -9.55280 -9.20289 -8.88462 -8.63005 -7.17751 -6.85991 -6.51270 -4.53296 1.72580 2.76236 2.94940 2.98999 3.02832 3.07649 3.18419 3.29302 3.35552 3.79007 4.16775 4.48212 4.56291 4.64413 4.71288 4.91399 4.96250 5.01368 5.07970 5.32012 5.57051 5.69994 5.76486 5.80558 5.84409 5.91823 5.96128 6.03763 6.13434 6.22578 6.28192 6.39433 6.45262 6.48261 6.55965 6.67614 6.87807 7.02665 7.09045 7.11932 7.17060 7.51423 7.58178 7.70107 7.90668 8.03197 8.11947 8.40779 8.56677 8.83993 9.31390 10.25129 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.006101 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.951975 B = 4588.289845 C = 6385.223264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.198 4.198 3 C -0.010 4.010 4 C 0.098 3.902 5 O -0.308 6.308 6 C 0.544 3.456 7 O -0.504 6.504 8 C -0.008 4.008 9 C -0.163 4.163 10 C -0.133 4.133 11 C -0.087 4.087 12 C -0.158 4.158 13 C -0.148 4.148 14 C -0.049 4.049 15 C 0.101 3.899 16 N -0.244 5.244 17 C -0.341 4.341 18 H 0.113 0.887 19 C 0.053 3.947 20 N -0.828 5.828 21 Si 0.929 3.071 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.123 4.123 26 C -0.141 4.141 27 C -0.152 4.152 28 H 0.211 0.789 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.280 0.720 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 2.292 -7.034 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.198 4.198 3 C -0.047 4.047 4 C 0.060 3.940 5 O -0.225 6.225 6 C 0.390 3.610 7 O -0.393 6.393 8 C -0.121 4.121 9 C -0.191 4.191 10 C -0.137 4.137 11 C -0.106 4.106 12 C -0.177 4.177 13 C -0.169 4.169 14 C -0.069 4.069 15 C -0.015 4.015 16 N 0.093 4.907 17 C -0.469 4.469 18 H 0.131 0.869 19 C -0.159 4.159 20 N -0.458 5.458 21 Si 0.753 3.247 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.190 4.190 28 H 0.228 0.772 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.198 2.052 -7.154 8.101 hybrid contribution 0.553 0.076 0.362 0.665 sum 3.751 2.128 -6.793 8.047 Atomic orbital electron populations 1.24630 0.95707 0.99836 0.99219 1.22504 0.94095 1.01252 1.01921 1.19041 0.86236 1.00005 0.99421 1.23011 0.92063 0.95542 0.83390 1.86854 1.26186 1.76505 1.32946 1.19864 0.79411 0.75326 0.86358 1.90831 1.73610 1.41916 1.32921 1.19233 0.94018 1.11673 0.87202 1.20281 0.92959 1.09457 0.96379 1.17961 0.94070 1.07719 0.93966 1.20037 0.95060 1.01037 0.94421 1.20271 0.97992 1.04609 0.94803 1.20578 0.93109 1.04482 0.98743 1.20078 0.96198 0.98937 0.91663 1.18246 0.85852 1.04489 0.92902 1.40051 1.06888 1.38056 1.05669 1.19929 0.89614 1.30054 1.07343 0.86923 1.25698 0.99731 0.93966 0.96475 1.69955 1.40173 1.25076 1.10601 0.85819 0.80468 0.79238 0.79128 1.18418 1.19866 1.19952 1.23054 0.92029 0.97416 1.03512 1.22857 0.97696 0.95920 1.01328 1.23508 0.98577 0.96971 0.99897 0.77229 0.89284 0.88711 0.85026 0.87765 0.87885 0.87636 0.86758 0.90918 0.89742 0.88427 0.91231 0.89540 0.89365 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 16.81 29.55 0.50 -2.59 16 2 C -0.20 -3.47 10.32 -37.12 -0.38 -3.86 16 3 C -0.01 -0.15 5.47 -29.52 -0.16 -0.31 16 4 C 0.10 1.57 1.04 -89.81 -0.09 1.48 16 5 O -0.31 -6.47 7.88 -40.93 -0.32 -6.79 16 6 C 0.54 12.28 5.91 34.15 0.20 12.48 16 7 O -0.50 -11.12 10.99 -19.34 -0.21 -11.33 16 8 C -0.01 -0.20 6.76 -82.27 -0.56 -0.75 16 9 C -0.16 -3.80 10.55 -39.00 -0.41 -4.22 16 10 C -0.13 -3.14 6.16 -106.90 -0.66 -3.80 16 11 C -0.09 -1.77 10.06 -39.51 -0.40 -2.17 16 12 C -0.16 -3.04 9.97 -39.95 -0.40 -3.43 16 13 C -0.15 -3.02 10.02 -39.50 -0.40 -3.42 16 14 C -0.05 -1.16 8.58 -39.41 -0.34 -1.50 16 15 C 0.10 2.55 6.03 -83.83 -0.51 2.05 16 16 N -0.24 -6.34 2.80 -56.10 -0.16 -6.50 16 17 C -0.34 -8.70 8.65 -15.01 -0.13 -8.83 16 18 H 0.11 2.82 6.93 -52.49 -0.36 2.46 16 19 C 0.05 1.30 4.79 -17.47 -0.08 1.22 16 20 N -0.83 -21.30 10.83 55.50 0.60 -20.69 16 21 Si 0.93 18.67 29.56 -169.99 -5.03 13.64 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.12 -1.58 7.48 -25.92 -0.19 -1.78 16 26 C -0.14 -1.90 8.02 -25.92 -0.21 -2.10 16 27 C -0.15 -2.27 6.76 -25.92 -0.18 -2.45 16 28 H 0.21 3.12 7.80 -54.10 -0.42 2.69 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.09 7.84 -51.93 -0.41 0.68 16 31 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.11 2.75 6.76 -52.48 -0.35 2.39 16 36 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.10 7.89 -51.92 -0.41 0.69 16 42 H 0.09 1.54 6.48 -51.93 -0.34 1.20 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -29.58 351.69 -9.44 -39.02 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.23 Total: 11.33 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -4.39 Total: -23.98 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.44 Total: -27.19 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.54 Total: -18.12 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.58 -9.44 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810751133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.389 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds