Wall clock time and date at job start Tue Mar 31 2020 13:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47219 * 316.13137 * 3 2 1 5 5 O 1.45204 * 112.90725 * 316.44354 * 4 3 2 6 6 C 1.34860 * 116.99942 * 71.40244 * 5 4 3 7 7 O 1.21598 * 120.00253 * 6.97820 * 6 5 4 8 8 C 1.46711 * 119.99838 * 186.98575 * 6 5 4 9 9 C 1.36224 * 125.44964 * 174.83311 * 8 6 5 10 10 C 1.41652 * 107.74261 * 180.02562 * 9 8 6 11 11 C 1.40044 * 133.33886 * 180.02562 * 10 9 8 12 12 C 1.36562 * 119.83403 * 179.97438 * 11 10 9 13 13 C 1.38864 * 120.60187 * 359.97438 * 12 11 10 14 14 C 1.37840 * 120.63693 * 0.04309 * 13 12 11 15 15 C 1.39096 * 119.81551 * 359.96126 * 14 13 12 16 16 N 1.37821 * 133.14978 * 180.40841 * 15 14 13 17 17 C 1.36874 * 125.62333 * 359.93299 * 16 15 14 18 18 H 1.07999 * 119.99997 * 225.10059 * 17 16 15 19 19 C 1.39019 * 119.99732 * 45.09345 * 17 16 15 20 20 N 1.31346 * 120.00377 * 7.59348 * 19 17 16 21 21 Si 1.86803 * 119.99854 * 187.58415 * 19 17 16 22 22 H 1.48500 * 109.47223 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46878 * 120.00396 * 21 19 17 24 24 H 1.48498 * 109.47291 * 240.00124 * 21 19 17 25 25 C 1.53782 * 113.61514 * 185.18818 * 4 3 2 26 26 C 1.53781 * 87.08080 * 220.01999 * 25 4 3 27 27 C 1.53778 * 113.61369 * 87.69238 * 4 3 2 28 28 H 4.44651 * 5.63328 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.47226 * 196.13434 * 3 2 1 30 30 H 1.08999 * 109.47541 * 76.12976 * 3 2 1 31 31 H 1.08001 * 126.12641 * 0.02562 * 9 8 6 32 32 H 1.08005 * 120.08467 * 359.96871 * 11 10 9 33 33 H 1.07999 * 119.70558 * 179.97438 * 12 11 10 34 34 H 1.08004 * 119.68240 * 180.02562 * 13 12 11 35 35 H 1.08004 * 120.09699 * 179.97438 * 14 13 12 36 36 H 0.96998 * 120.00114 * 184.99025 * 20 19 17 37 37 H 1.09001 * 113.61114 * 105.47456 * 25 4 3 38 38 H 1.08993 * 113.68980 * 334.57957 * 25 4 3 39 39 H 1.08997 * 113.61266 * 139.98339 * 26 25 4 40 40 H 1.09000 * 113.61756 * 270.88508 * 26 25 4 41 41 H 1.09007 * 113.61561 * 25.43371 * 27 4 3 42 42 H 1.08999 * 113.61705 * 254.53220 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0391 0.9997 5 8 2.4310 -1.0178 2.2573 6 6 1.1659 -1.4846 2.2423 7 8 0.7250 -2.0141 1.2404 8 6 0.3214 -1.3535 3.4348 9 6 -0.9956 -1.6929 3.5115 10 6 -1.4377 -1.4125 4.8278 11 6 -2.6698 -1.5537 5.4784 12 6 -2.7922 -1.1876 6.7883 13 6 -1.7047 -0.6759 7.4839 14 6 -0.4820 -0.5272 6.8652 15 6 -0.3327 -0.8931 5.5316 16 7 0.7365 -0.8710 4.6622 17 6 2.0000 -0.4393 4.9631 18 1 2.5268 0.2084 4.2781 19 6 2.6051 -0.8345 6.1507 20 7 2.0301 -1.7372 6.9121 21 14 4.2361 -0.0820 6.6634 22 1 4.6702 0.9031 5.6404 23 1 4.0762 0.6017 7.9719 24 1 5.2584 -1.1522 6.7858 25 6 4.6848 -1.0316 1.1699 26 6 4.6087 -2.5669 1.2133 27 6 3.3089 -2.4470 0.4003 28 1 -1.0499 -0.0001 0.0003 29 1 3.0089 0.9880 0.2856 30 1 3.0095 -0.2455 -0.9977 31 1 -1.5952 -2.1024 2.7121 32 1 -3.5211 -1.9510 4.9455 33 1 -3.7434 -1.2969 7.2879 34 1 -1.8181 -0.3915 8.5197 35 1 0.3579 -0.1280 7.4145 36 1 2.4143 -1.9603 7.7744 37 1 5.0176 -0.5843 2.1065 38 1 5.2201 -0.6453 0.3026 39 1 5.4175 -3.0595 0.6736 40 1 4.4612 -2.9686 2.2157 41 1 3.4669 -2.4477 -0.6783 42 1 2.5310 -3.1424 0.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810751133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:14 Heat of formation + Delta-G solvation = 50.669105 kcal Electronic energy + Delta-G solvation = -27789.420280 eV Core-core repulsion = 24088.406033 eV Total energy + Delta-G solvation = -3701.014248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34760 -41.58628 -39.06549 -37.60345 -36.41904 -35.35657 -34.62748 -32.50029 -30.77232 -30.20639 -29.79481 -26.80837 -26.72288 -25.79791 -24.05010 -22.73057 -22.22580 -21.09649 -20.23983 -19.64494 -19.16888 -18.29318 -17.42302 -17.33571 -17.09483 -16.47647 -16.31880 -16.02140 -15.60613 -15.28223 -14.98325 -14.83264 -14.66542 -14.59648 -14.46296 -13.81189 -13.59554 -13.44536 -13.26129 -13.07458 -12.86349 -12.79156 -12.54724 -12.35345 -12.15064 -12.11835 -11.98706 -11.74857 -11.59922 -11.48117 -11.09689 -10.99635 -10.90419 -10.40918 -10.24178 -8.96186 -8.65919 -8.29574 -6.44490 -0.00179 1.08856 1.24408 1.34803 1.38995 1.50407 1.75756 1.92735 2.00445 2.10964 2.39651 2.83233 2.87651 3.32013 3.34276 3.46928 3.73581 3.84153 3.85364 3.96758 4.20068 4.41798 4.45492 4.51209 4.59255 4.68509 4.71888 4.73961 4.79042 4.82041 4.95740 5.00332 5.04496 5.07077 5.15745 5.19595 5.24990 5.32856 5.35813 5.43690 5.59644 5.78987 5.90043 5.95771 6.16706 6.30666 6.59670 6.80166 6.83367 7.07566 7.47848 8.43502 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.006101 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.951975 B = 4588.289845 C = 6385.223264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.213 4.213 3 C -0.013 4.013 4 C 0.071 3.929 5 O -0.328 6.328 6 C 0.544 3.456 7 O -0.507 6.507 8 C -0.039 4.039 9 C -0.167 4.167 10 C -0.155 4.155 11 C -0.089 4.089 12 C -0.151 4.151 13 C -0.134 4.134 14 C -0.083 4.083 15 C 0.072 3.928 16 N -0.265 5.265 17 C -0.362 4.362 18 H 0.106 0.894 19 C 0.015 3.985 20 N -0.863 5.863 21 Si 0.994 3.006 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.271 1.271 25 C -0.107 4.107 26 C -0.138 4.138 27 C -0.150 4.150 28 H 0.223 0.777 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.283 0.717 37 H 0.072 0.928 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.121 0.879 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 2.740 -7.487 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.213 4.213 3 C -0.049 4.049 4 C 0.035 3.965 5 O -0.244 6.244 6 C 0.391 3.609 7 O -0.397 6.397 8 C -0.151 4.151 9 C -0.194 4.194 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.170 4.170 13 C -0.154 4.154 14 C -0.103 4.103 15 C -0.043 4.043 16 N 0.071 4.929 17 C -0.490 4.490 18 H 0.123 0.877 19 C -0.193 4.193 20 N -0.493 5.493 21 Si 0.815 3.185 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.196 1.196 25 C -0.143 4.143 26 C -0.175 4.175 27 C -0.187 4.187 28 H 0.240 0.760 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.139 0.861 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.613 2.506 -7.618 8.796 hybrid contribution 0.283 -0.099 0.489 0.574 sum 3.896 2.407 -7.129 8.473 Atomic orbital electron populations 1.25227 0.96744 1.00335 0.99831 1.23374 0.95504 1.00878 1.01507 1.19311 0.84399 1.00318 1.00843 1.23645 0.93686 0.96958 0.82231 1.86800 1.25454 1.76094 1.36074 1.19656 0.80033 0.75445 0.85770 1.90798 1.73965 1.42126 1.32769 1.19786 0.95141 1.12331 0.87879 1.20563 0.92874 1.09025 0.96957 1.18386 0.95162 1.08286 0.94103 1.20476 0.94718 1.00342 0.95192 1.20763 0.99325 1.02604 0.94299 1.21042 0.92063 1.02164 1.00143 1.20151 0.97323 1.01355 0.91448 1.18764 0.86458 1.05213 0.93826 1.40241 1.07265 1.39183 1.06225 1.20051 0.90152 1.30743 1.08016 0.87683 1.26560 1.02750 0.94012 0.95942 1.70052 1.41807 1.26426 1.11035 0.84874 0.76098 0.78559 0.79010 1.17557 1.19007 1.19626 1.23169 0.89530 0.96660 1.04968 1.22801 0.98066 0.96938 0.99730 1.23548 0.98046 0.95251 1.01850 0.76019 0.87882 0.84955 0.83454 0.84523 0.83346 0.84406 0.88423 0.90732 0.90914 0.83755 0.87806 0.92898 0.86097 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.28 16.81 74.32 1.25 -6.03 16 2 C -0.21 -7.45 10.32 31.12 0.32 -7.13 16 3 C -0.01 -0.34 5.47 28.79 0.16 -0.18 16 4 C 0.07 2.25 1.04 -10.27 -0.01 2.24 16 5 O -0.33 -14.26 7.88 -57.74 -0.46 -14.71 16 6 C 0.54 25.71 5.91 70.04 0.41 26.13 16 7 O -0.51 -23.17 10.99 19.52 0.21 -22.95 16 8 C -0.04 -2.00 6.76 39.88 0.27 -1.73 16 9 C -0.17 -8.02 10.55 22.64 0.24 -7.79 16 10 C -0.16 -7.43 6.16 -21.34 -0.13 -7.57 16 11 C -0.09 -3.47 10.06 22.32 0.22 -3.24 16 12 C -0.15 -5.37 9.97 22.03 0.22 -5.15 16 13 C -0.13 -5.24 10.02 22.33 0.22 -5.02 16 14 C -0.08 -3.99 8.58 22.38 0.19 -3.80 16 15 C 0.07 3.80 6.03 39.07 0.24 4.04 16 16 N -0.27 -14.50 2.80 -331.41 -0.93 -15.43 16 17 C -0.36 -19.40 8.65 84.09 0.73 -18.68 16 18 H 0.11 5.56 6.93 -2.91 -0.02 5.54 16 19 C 0.02 0.78 4.79 84.95 0.41 1.19 16 20 N -0.86 -46.11 10.83 21.67 0.23 -45.88 16 21 Si 0.99 39.09 29.56 68.60 2.03 41.12 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 C -0.11 -2.50 7.48 31.12 0.23 -2.27 16 26 C -0.14 -3.54 8.02 31.12 0.25 -3.29 16 27 C -0.15 -4.32 6.76 31.12 0.21 -4.11 16 28 H 0.22 6.81 7.80 -4.42 -0.03 6.78 16 29 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.13 2.56 7.84 -2.39 -0.02 2.54 16 31 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 32 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.10 4.91 6.76 -2.91 -0.02 4.89 16 36 H 0.28 13.97 8.31 -92.71 -0.77 13.19 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.14 2.05 8.10 -2.39 -0.02 2.03 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 2.64 7.89 -2.38 -0.02 2.62 16 42 H 0.05 1.75 6.48 -2.39 -0.02 1.73 16 Total: -1.00 -69.25 351.69 7.56 -61.69 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 1.03 Total: 38.54 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 5.43 Total: -42.38 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.69 Total: -61.31 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.24 Total: -37.67 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -69.25 7.56 -61.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810751133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.363 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds