Wall clock time and date at job start Tue Mar 31 2020 13:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39592 * 120.10667 * 193.54691 * 3 2 1 5 5 C 1.37994 * 119.99938 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.21679 * 359.72071 * 5 4 3 7 7 C 1.38944 * 120.21430 * 0.55673 * 6 5 4 8 8 N 1.39947 * 120.00111 * 179.71530 * 7 6 5 9 9 C 1.46498 * 120.00369 * 292.37630 * 8 7 6 10 10 C 1.50701 * 109.47115 * 269.99772 * 9 8 7 11 11 C 1.34512 * 125.78675 * 89.99499 * 10 9 8 12 12 C 1.41387 * 106.83952 * 179.97438 * 11 10 9 13 13 C 1.34517 * 106.83712 * 0.02562 * 12 11 10 14 14 O 1.34299 * 108.42263 * 0.26109 * 13 12 11 15 15 C 1.34784 * 119.99546 * 112.37156 * 8 7 6 16 16 O 1.21281 * 120.00005 * 355.00116 * 15 8 7 17 17 C 1.50704 * 119.99849 * 174.99819 * 15 8 7 18 18 C 1.52989 * 109.47203 * 180.02562 * 17 15 8 19 19 C 1.50704 * 109.47203 * 179.97438 * 18 17 15 20 20 H 1.07992 * 119.99825 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99540 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 119.99915 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47285 * 90.00203 * 23 21 19 25 25 H 1.48503 * 109.47055 * 209.99598 * 23 21 19 26 26 H 1.48495 * 109.47501 * 329.99753 * 23 21 19 27 27 C 1.38645 * 120.00160 * 359.44742 * 7 6 5 28 28 H 4.52055 * 14.03092 * 359.97438 * 4 2 1 29 29 H 1.08000 * 119.99715 * 359.95468 * 4 3 2 30 30 H 1.07997 * 119.88964 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.89581 * 180.27570 * 6 5 4 32 32 H 1.08997 * 109.46948 * 149.99709 * 9 8 7 33 33 H 1.08999 * 109.46921 * 29.99850 * 9 8 7 34 34 H 1.07995 * 126.58312 * 359.94671 * 11 10 9 35 35 H 1.08000 * 126.58415 * 180.02562 * 12 11 10 36 36 H 1.08004 * 125.78484 * 179.97438 * 13 12 11 37 37 H 1.09003 * 109.47083 * 300.00651 * 17 15 8 38 38 H 1.09002 * 109.46897 * 59.99857 * 17 15 8 39 39 H 1.09003 * 109.47521 * 300.00246 * 18 17 15 40 40 H 1.09002 * 109.47423 * 60.00042 * 18 17 15 41 41 H 0.97000 * 119.99453 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.11106 * 180.25482 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3057 1.1750 0.2829 5 6 4.6856 1.1729 0.2828 6 6 5.3796 0.0092 0.0089 7 6 4.6923 -1.1634 -0.2795 8 7 5.3994 -2.3376 -0.5621 9 6 6.1914 -2.4382 -1.7904 10 6 5.3316 -2.9887 -2.8988 11 6 4.5867 -2.2622 -3.7513 12 6 3.9488 -3.1773 -4.6200 13 6 4.3417 -4.4082 -4.2460 14 8 5.1744 -4.2882 -3.1992 15 6 5.3517 -3.3759 0.2961 16 8 4.7714 -3.2614 1.3548 17 6 6.0196 -4.6790 -0.0602 18 6 5.8171 -5.6832 1.0762 19 6 6.4844 -6.9865 0.7197 20 1 7.0015 -7.0883 -0.2229 21 6 6.4356 -8.0487 1.5975 22 7 7.0184 -9.1859 1.2865 23 14 5.5418 -7.8724 3.2282 24 1 4.1205 -8.2682 3.0590 25 1 6.1825 -8.7492 4.2412 26 1 5.6117 -6.4599 3.6809 27 6 3.3059 -1.1716 -0.2820 28 1 -1.0500 -0.0009 -0.0007 29 1 2.7670 2.0851 0.5015 30 1 5.2251 2.0826 0.5015 31 1 6.4596 0.0125 0.0146 32 1 7.0385 -3.1034 -1.6230 33 1 6.5556 -1.4496 -2.0698 34 1 4.4934 -1.1864 -3.7685 35 1 3.2753 -2.9346 -5.4287 36 1 4.0354 -5.3360 -4.7064 37 1 5.5802 -5.0740 -0.9762 38 1 7.0859 -4.5113 -0.2117 39 1 6.2562 -5.2884 1.9925 40 1 4.7507 -5.8508 1.2273 41 1 6.9837 -9.9333 1.9039 42 1 2.7698 -2.0830 -0.5019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812972010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:11 Heat of formation + Delta-G solvation = 66.800701 kcal Electronic energy + Delta-G solvation = -26383.818706 eV Core-core repulsion = 22683.503977 eV Total energy + Delta-G solvation = -3700.314729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57259 -40.47272 -38.63140 -35.90034 -33.85042 -33.51565 -32.97289 -31.66364 -30.93802 -30.40899 -29.39982 -26.32919 -25.93659 -23.51797 -23.06654 -21.74355 -21.12707 -20.69222 -19.46170 -18.54549 -17.50725 -17.18915 -16.95749 -16.29962 -16.17376 -15.86684 -15.51180 -14.83623 -14.73491 -14.36961 -14.08437 -13.79853 -13.37006 -13.30693 -13.22278 -12.84450 -12.76535 -12.55737 -12.51255 -12.04285 -11.94218 -11.70084 -11.42054 -11.28796 -10.96752 -10.70363 -10.17673 -10.07686 -9.92364 -9.80319 -9.54251 -9.30711 -9.17623 -8.82444 -8.66916 -8.50472 -8.38712 -6.02564 -4.01099 0.74743 1.14748 1.63647 2.49682 2.58274 2.76518 2.87612 3.04470 3.14739 3.38052 3.44667 3.55612 3.80781 4.08762 4.51266 4.58095 4.75439 4.77738 4.90254 4.97684 4.98776 5.10309 5.11946 5.26427 5.32849 5.33738 5.36841 5.53318 5.74954 5.84288 5.89382 5.99346 6.01581 6.10171 6.14131 6.25923 6.30188 6.41825 6.46829 6.64392 6.92555 7.13787 7.33377 7.34226 7.35693 7.41547 7.78191 8.40685 8.54388 9.00626 9.60503 11.10237 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.004121 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.632810 B = 6793.656934 C = 8126.854581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.016 3.984 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.112 4.112 7 C 0.152 3.848 8 N -0.582 5.582 9 C 0.192 3.808 10 C -0.037 4.037 11 C -0.192 4.192 12 C -0.223 4.223 13 C -0.027 4.027 14 O -0.161 6.161 15 C 0.516 3.484 16 O -0.516 6.516 17 C -0.121 4.121 18 C 0.002 3.998 19 C -0.523 4.523 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.903 5.903 23 Si 0.875 3.125 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.261 1.261 27 C -0.078 4.078 28 H 0.224 0.776 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.202 0.798 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.018 0.982 41 H 0.263 0.737 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 21.835 -10.821 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.015 3.985 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.132 4.132 7 C 0.062 3.938 8 N -0.313 5.313 9 C 0.070 3.930 10 C -0.089 4.089 11 C -0.212 4.212 12 C -0.242 4.242 13 C -0.096 4.096 14 O -0.056 6.056 15 C 0.307 3.693 16 O -0.389 6.389 17 C -0.161 4.161 18 C -0.036 4.036 19 C -0.561 4.561 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.542 5.542 23 Si 0.702 3.298 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.186 1.186 27 C -0.098 4.098 28 H 0.241 0.759 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.219 0.781 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.254 21.416 -9.968 24.436 hybrid contribution -0.930 -0.015 0.507 1.059 sum -7.184 21.401 -9.461 24.477 Atomic orbital electron populations 1.24866 0.95743 0.99366 0.99575 1.20002 0.91995 1.01251 1.01248 1.15758 0.86627 0.93808 1.02298 1.21178 0.94206 0.97008 0.99427 1.20902 0.93669 0.97983 1.00286 1.21369 1.00460 0.92224 0.99113 1.17446 0.90141 0.86611 0.99633 1.45943 1.50207 1.13566 1.21611 1.20015 0.91339 1.02254 0.79387 1.22844 1.04160 0.81364 1.00536 1.21563 1.00936 1.00522 0.98153 1.21796 1.05852 0.92635 1.03931 1.24149 0.95176 1.00252 0.90023 1.84135 1.52884 1.27109 1.41451 1.21870 0.79620 0.85034 0.82752 1.90692 1.42667 1.82421 1.23118 1.21794 1.00460 0.90461 1.03351 1.19387 0.97426 0.93610 0.93166 1.21074 1.34668 0.94763 1.05549 0.90814 1.24946 0.94947 0.95052 0.98139 1.69909 1.44426 1.02918 1.36910 0.86834 0.80106 0.78837 0.84023 1.20263 1.21383 1.18555 1.21306 0.93186 0.97409 0.97865 0.75889 0.85512 0.85054 0.85209 0.87297 0.87072 0.83820 0.83658 0.78096 0.88773 0.89353 0.95791 0.96367 0.92725 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.14 -1.85 13.24 -38.84 -0.51 -2.37 16 3 C 0.02 0.21 5.72 -107.03 -0.61 -0.41 16 4 C -0.10 -1.06 9.75 -39.17 -0.38 -1.44 16 5 C -0.11 -1.05 10.02 -39.67 -0.40 -1.45 16 6 C -0.11 -1.24 9.66 -39.32 -0.38 -1.62 16 7 C 0.15 2.11 4.76 -83.74 -0.40 1.71 16 8 N -0.58 -8.48 2.50 -114.78 -0.29 -8.77 16 9 C 0.19 2.16 5.65 -5.19 -0.03 2.13 16 10 C -0.04 -0.47 6.81 -35.62 -0.24 -0.71 16 11 C -0.19 -2.20 10.81 -39.70 -0.43 -2.63 16 12 C -0.22 -2.45 10.91 -39.70 -0.43 -2.89 16 13 C -0.03 -0.32 12.09 29.42 0.36 0.04 16 14 O -0.16 -2.31 9.32 5.73 0.05 -2.25 16 15 C 0.52 9.79 7.52 -10.98 -0.08 9.71 16 16 O -0.52 -11.79 15.72 5.56 0.09 -11.71 16 17 C -0.12 -2.42 4.31 -27.89 -0.12 -2.54 16 18 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 19 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 20 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 23 Si 0.87 22.78 27.47 -169.99 -4.67 18.11 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.26 -6.78 6.54 56.52 0.37 -6.42 16 27 C -0.08 -1.15 9.22 -39.00 -0.36 -1.51 16 28 H 0.22 1.38 7.80 -54.09 -0.42 0.96 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.11 1.16 6.48 -51.93 -0.34 0.82 16 33 H 0.11 0.88 7.85 -51.93 -0.41 0.47 16 34 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.85 6.66 -51.93 -0.35 1.50 16 38 H 0.09 1.59 7.25 -51.93 -0.38 1.21 16 39 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 40 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -36.39 371.34 -7.62 -44.01 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.20 Total: 0.92 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.98 Total: -18.66 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.49 Total: -36.01 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.14 Total: -13.96 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.39 -7.62 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812972010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.813 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds