Wall clock time and date at job start Tue Mar 31 2020 13:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39592 * 120.10667 * 193.54691 * 3 2 1 5 5 C 1.37994 * 119.99938 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.21679 * 359.72071 * 5 4 3 7 7 C 1.38944 * 120.21430 * 0.55673 * 6 5 4 8 8 N 1.39947 * 120.00111 * 179.71530 * 7 6 5 9 9 C 1.46498 * 120.00369 * 292.37630 * 8 7 6 10 10 C 1.50701 * 109.47115 * 269.99772 * 9 8 7 11 11 C 1.34512 * 125.78675 * 89.99499 * 10 9 8 12 12 C 1.41387 * 106.83952 * 179.97438 * 11 10 9 13 13 C 1.34517 * 106.83712 * 0.02562 * 12 11 10 14 14 O 1.34299 * 108.42263 * 0.26109 * 13 12 11 15 15 C 1.34784 * 119.99546 * 112.37156 * 8 7 6 16 16 O 1.21281 * 120.00005 * 355.00116 * 15 8 7 17 17 C 1.50704 * 119.99849 * 174.99819 * 15 8 7 18 18 C 1.52989 * 109.47203 * 180.02562 * 17 15 8 19 19 C 1.50704 * 109.47203 * 179.97438 * 18 17 15 20 20 H 1.07992 * 119.99825 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99540 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 119.99915 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47285 * 90.00203 * 23 21 19 25 25 H 1.48503 * 109.47055 * 209.99598 * 23 21 19 26 26 H 1.48495 * 109.47501 * 329.99753 * 23 21 19 27 27 C 1.38645 * 120.00160 * 359.44742 * 7 6 5 28 28 H 4.52055 * 14.03092 * 359.97438 * 4 2 1 29 29 H 1.08000 * 119.99715 * 359.95468 * 4 3 2 30 30 H 1.07997 * 119.88964 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.89581 * 180.27570 * 6 5 4 32 32 H 1.08997 * 109.46948 * 149.99709 * 9 8 7 33 33 H 1.08999 * 109.46921 * 29.99850 * 9 8 7 34 34 H 1.07995 * 126.58312 * 359.94671 * 11 10 9 35 35 H 1.08000 * 126.58415 * 180.02562 * 12 11 10 36 36 H 1.08004 * 125.78484 * 179.97438 * 13 12 11 37 37 H 1.09003 * 109.47083 * 300.00651 * 17 15 8 38 38 H 1.09002 * 109.46897 * 59.99857 * 17 15 8 39 39 H 1.09003 * 109.47521 * 300.00246 * 18 17 15 40 40 H 1.09002 * 109.47423 * 60.00042 * 18 17 15 41 41 H 0.97000 * 119.99453 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.11106 * 180.25482 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3057 1.1750 0.2829 5 6 4.6856 1.1729 0.2828 6 6 5.3796 0.0092 0.0089 7 6 4.6923 -1.1634 -0.2795 8 7 5.3994 -2.3376 -0.5621 9 6 6.1914 -2.4382 -1.7904 10 6 5.3316 -2.9887 -2.8988 11 6 4.5867 -2.2622 -3.7513 12 6 3.9488 -3.1773 -4.6200 13 6 4.3417 -4.4082 -4.2460 14 8 5.1744 -4.2882 -3.1992 15 6 5.3517 -3.3759 0.2961 16 8 4.7714 -3.2614 1.3548 17 6 6.0196 -4.6790 -0.0602 18 6 5.8171 -5.6832 1.0762 19 6 6.4844 -6.9865 0.7197 20 1 7.0015 -7.0883 -0.2229 21 6 6.4356 -8.0487 1.5975 22 7 7.0184 -9.1859 1.2865 23 14 5.5418 -7.8724 3.2282 24 1 4.1205 -8.2682 3.0590 25 1 6.1825 -8.7492 4.2412 26 1 5.6117 -6.4599 3.6809 27 6 3.3059 -1.1716 -0.2820 28 1 -1.0500 -0.0009 -0.0007 29 1 2.7670 2.0851 0.5015 30 1 5.2251 2.0826 0.5015 31 1 6.4596 0.0125 0.0146 32 1 7.0385 -3.1034 -1.6230 33 1 6.5556 -1.4496 -2.0698 34 1 4.4934 -1.1864 -3.7685 35 1 3.2753 -2.9346 -5.4287 36 1 4.0354 -5.3360 -4.7064 37 1 5.5802 -5.0740 -0.9762 38 1 7.0859 -4.5113 -0.2117 39 1 6.2562 -5.2884 1.9925 40 1 4.7507 -5.8508 1.2273 41 1 6.9837 -9.9333 1.9039 42 1 2.7698 -2.0830 -0.5019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812972010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:10 Heat of formation + Delta-G solvation = 46.079518 kcal Electronic energy + Delta-G solvation = -26384.717244 eV Core-core repulsion = 22683.503977 eV Total energy + Delta-G solvation = -3701.213267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.51153 -41.65892 -39.76438 -37.11118 -35.64693 -34.65904 -33.91974 -33.44162 -32.11515 -31.29110 -30.48982 -28.12028 -26.95569 -24.44606 -24.39577 -22.72221 -22.59013 -21.70835 -20.73270 -19.63735 -19.20950 -18.34648 -17.97734 -17.71162 -17.23912 -16.92785 -16.63085 -16.25013 -16.00941 -15.70744 -15.48713 -14.94793 -14.66992 -14.56633 -14.44158 -14.17199 -14.00567 -13.73369 -13.60455 -13.42460 -12.97007 -12.93970 -12.80828 -12.59641 -12.24320 -12.09202 -12.00793 -11.81864 -11.57853 -11.44310 -10.97698 -10.82779 -10.80423 -10.52078 -9.78946 -9.57119 -9.34708 -8.33525 -6.36264 -0.12444 0.22411 0.67747 1.29961 1.31928 1.41408 1.46962 1.59765 1.71747 1.93200 2.02905 2.17163 2.32351 2.91036 3.01810 3.30642 3.65988 3.72833 3.88099 3.94377 4.11641 4.13069 4.17728 4.25834 4.28770 4.32220 4.41900 4.52157 4.54634 4.66239 4.88494 4.89442 4.99000 5.09112 5.18903 5.23835 5.28149 5.36292 5.38655 5.41350 5.51422 5.56385 5.62084 5.94978 6.02492 6.21990 6.24277 6.51639 6.68898 7.02888 7.28703 8.82189 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.004121 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.632810 B = 6793.656934 C = 8126.854581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.202 4.202 3 C 0.001 3.999 4 C -0.098 4.098 5 C -0.096 4.096 6 C -0.110 4.110 7 C 0.130 3.870 8 N -0.567 5.567 9 C 0.186 3.814 10 C -0.058 4.058 11 C -0.189 4.189 12 C -0.226 4.226 13 C -0.043 4.043 14 O -0.192 6.192 15 C 0.519 3.481 16 O -0.564 6.564 17 C -0.112 4.112 18 C 0.008 3.992 19 C -0.527 4.527 20 H 0.051 0.949 21 C 0.019 3.981 22 N -0.940 5.940 23 Si 0.934 3.066 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.262 1.262 27 C -0.104 4.104 28 H 0.262 0.738 29 H 0.151 0.849 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.225 0.775 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.014 0.986 40 H 0.002 0.998 41 H 0.268 0.732 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 24.957 -11.024 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.202 4.202 3 C 0.001 3.999 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.040 3.960 8 N -0.296 5.296 9 C 0.066 3.934 10 C -0.109 4.109 11 C -0.209 4.209 12 C -0.245 4.245 13 C -0.111 4.111 14 O -0.088 6.088 15 C 0.311 3.689 16 O -0.441 6.441 17 C -0.152 4.152 18 C -0.030 4.030 19 C -0.565 4.565 20 H 0.069 0.931 21 C -0.179 4.179 22 N -0.581 5.581 23 Si 0.758 3.242 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.187 1.187 27 C -0.124 4.124 28 H 0.278 0.722 29 H 0.169 0.831 30 H 0.190 0.810 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.241 0.759 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.032 0.968 40 H 0.020 0.980 41 H 0.077 0.923 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.654 24.571 -10.225 27.432 hybrid contribution -0.877 -0.918 0.440 1.343 sum -7.531 23.653 -9.785 26.682 Atomic orbital electron populations 1.25824 0.96577 0.97132 0.97236 1.20506 0.92878 1.03418 1.03378 1.15997 0.87265 0.94147 1.02519 1.21546 0.94975 0.96876 0.98149 1.21364 0.93293 0.98785 0.97933 1.21653 1.01739 0.91404 0.98130 1.17648 0.89912 0.87016 1.01452 1.45714 1.49506 1.12785 1.21557 1.20422 0.90660 1.04601 0.77750 1.23116 1.05268 0.81085 1.01445 1.21857 1.00047 1.01424 0.97597 1.22149 1.05808 0.92258 1.04291 1.24763 0.94896 1.01780 0.89663 1.84106 1.53904 1.28228 1.42574 1.21477 0.79059 0.85612 0.82757 1.90663 1.44862 1.83340 1.25285 1.21562 1.02122 0.90356 1.01136 1.19210 0.95689 0.93401 0.94689 1.21340 1.34194 0.96319 1.04613 0.93075 1.25728 0.95804 0.94831 1.01580 1.70012 1.45885 1.03775 1.38408 0.85901 0.79187 0.78796 0.80282 1.19675 1.19913 1.18686 1.21166 0.93814 0.97056 1.00378 0.72228 0.83088 0.81025 0.82720 0.86829 0.83091 0.82132 0.81389 0.75912 0.88677 0.87257 0.96782 0.97956 0.92297 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 19.25 74.32 1.43 -1.49 16 2 C -0.20 -5.10 13.24 30.01 0.40 -4.70 16 3 C 0.00 0.04 5.72 -21.43 -0.12 -0.09 16 4 C -0.10 -1.84 9.75 22.54 0.22 -1.62 16 5 C -0.10 -1.48 10.02 22.21 0.22 -1.26 16 6 C -0.11 -2.14 9.66 22.44 0.22 -1.92 16 7 C 0.13 3.51 4.76 38.11 0.18 3.69 16 8 N -0.57 -16.35 2.50 -635.43 -1.59 -17.94 16 9 C 0.19 3.97 5.65 85.63 0.48 4.45 16 10 C -0.06 -1.45 6.81 24.83 0.17 -1.28 16 11 C -0.19 -4.16 10.81 22.19 0.24 -3.92 16 12 C -0.23 -4.77 10.91 22.19 0.24 -4.52 16 13 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 14 O -0.19 -5.59 9.32 -2.43 -0.02 -5.62 16 15 C 0.52 20.14 7.52 87.66 0.66 20.80 16 16 O -0.56 -26.64 15.72 -3.03 -0.05 -26.68 16 17 C -0.11 -4.59 4.31 29.85 0.13 -4.46 16 18 C 0.01 0.42 3.33 29.85 0.10 0.52 16 19 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 20 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 21 C 0.02 1.12 5.47 84.66 0.46 1.58 16 22 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 23 Si 0.93 47.64 27.47 68.60 1.88 49.53 16 24 H -0.27 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.26 -13.37 6.54 99.48 0.65 -12.72 16 27 C -0.10 -3.16 9.22 22.65 0.21 -2.95 16 28 H 0.26 2.44 7.80 -4.42 -0.03 2.41 16 29 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.11 2.29 6.48 -2.39 -0.02 2.28 16 33 H 0.15 1.95 7.85 -2.39 -0.02 1.94 16 34 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.22 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.10 3.86 6.66 -2.39 -0.02 3.85 16 38 H 0.11 3.93 7.25 -2.39 -0.02 3.92 16 39 H 0.01 0.74 7.16 -2.39 -0.02 0.73 16 40 H 0.00 0.11 7.53 -2.39 -0.02 0.09 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.09 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -82.60 371.34 7.79 -74.81 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.97 Total: 13.15 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 6.30 Total: -28.19 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -1.29 Total: -77.00 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.07 Total: -32.30 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.88 Total: 49.53 kcal Total: -82.60 7.79 -74.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812972010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.891 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds