Wall clock time and date at job start Tue Mar 31 2020 13:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99389 * 2 1 4 4 C 1.53001 * 109.46749 * 184.84290 * 3 2 1 5 5 C 1.50699 * 109.47375 * 304.84254 * 3 2 1 6 6 O 1.21294 * 120.00039 * 145.00119 * 5 3 2 7 7 N 1.34776 * 119.99939 * 325.00581 * 5 3 2 8 8 C 1.40090 * 119.99980 * 184.37535 * 7 5 3 9 9 C 1.38708 * 120.07203 * 325.37539 * 8 7 5 10 10 C 1.38194 * 120.01429 * 179.69777 * 9 8 7 11 11 C 1.38547 * 120.17883 * 0.59995 * 10 9 8 12 12 F 1.35098 * 119.92299 * 179.69620 * 11 10 9 13 13 C 1.38338 * 120.15193 * 359.67871 * 11 10 9 14 14 C 1.38739 * 119.98118 * 0.02562 * 13 11 10 15 15 O 1.35770 * 120.09341 * 179.97438 * 14 13 11 16 16 C 1.34809 * 116.99614 * 5.77638 * 15 14 13 17 17 H 1.07997 * 120.00205 * 5.46816 * 16 15 14 18 18 C 1.38638 * 119.99775 * 185.46346 * 16 15 14 19 19 N 1.31572 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99916 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46895 * 89.99750 * 20 18 16 22 22 H 1.48493 * 109.46847 * 210.00011 * 20 18 16 23 23 H 1.48498 * 109.46817 * 329.99816 * 20 18 16 24 24 C 1.53001 * 109.47246 * 64.84578 * 3 2 1 25 25 C 1.53001 * 117.51727 * 111.02358 * 24 3 2 26 26 C 1.52997 * 60.00141 * 107.48055 * 25 24 3 27 27 H 1.08998 * 109.47288 * 304.97351 * 1 2 3 28 28 H 1.09000 * 109.47303 * 64.97901 * 1 2 3 29 29 H 1.09001 * 109.46584 * 184.97539 * 1 2 3 30 30 H 1.08999 * 109.47699 * 300.00225 * 4 3 2 31 31 H 1.09004 * 109.47072 * 60.00023 * 4 3 2 32 32 H 1.09000 * 109.47241 * 179.97438 * 4 3 2 33 33 H 0.97004 * 120.00244 * 4.37085 * 7 5 3 34 34 H 1.08000 * 119.99389 * 359.97438 * 9 8 7 35 35 H 1.08010 * 119.90729 * 180.29846 * 10 9 8 36 36 H 1.08005 * 120.01069 * 180.02562 * 13 11 10 37 37 H 0.96999 * 120.00057 * 179.97438 * 19 18 16 38 38 H 1.08993 * 115.55174 * 325.32634 * 24 3 2 39 39 H 1.09001 * 117.50285 * 214.97105 * 25 24 3 40 40 H 1.09004 * 117.50148 * 359.97438 * 25 24 3 41 41 H 1.08995 * 117.50394 * 252.50953 * 26 25 24 42 42 H 1.09005 * 117.50283 * 107.48435 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5306 1.1869 -0.1218 5 6 1.4728 2.0946 -1.1661 6 8 1.2844 3.2877 -1.0557 7 7 1.2015 1.4745 -2.3315 8 6 0.7895 2.2212 -3.4429 9 6 -0.0035 3.3460 -3.2694 10 6 -0.4040 4.0853 -4.3661 11 6 -0.0260 3.6994 -5.6419 12 9 -0.4256 4.4225 -6.7108 13 6 0.7600 2.5756 -5.8237 14 6 1.1709 1.8321 -4.7268 15 8 1.9419 0.7285 -4.9027 16 6 2.3731 0.4764 -6.1548 17 1 2.1773 1.1847 -6.9462 18 6 3.0681 -0.6920 -6.4265 19 7 3.3072 -1.5547 -5.4623 20 14 3.6663 -1.0410 -8.1615 21 1 5.0310 -0.4822 -8.3363 22 1 3.6993 -2.5082 -8.3879 23 1 2.7440 -0.4098 -9.1393 24 6 1.6573 2.0208 1.3057 25 6 2.7914 2.2763 2.3004 26 6 2.1973 3.4388 1.5026 27 1 -0.3634 0.5890 0.8421 28 1 -0.3634 0.4346 -0.9312 29 1 -0.3632 -1.0238 0.0891 30 1 3.9193 0.6162 0.7216 31 1 3.7819 0.6773 -1.0520 32 1 3.9739 2.1827 -0.1223 33 1 1.2915 0.5111 -2.4009 34 1 -0.3043 3.6465 -2.2766 35 1 -1.0175 4.9635 -4.2285 36 1 1.0537 2.2771 -6.8193 37 1 3.7931 -2.3723 -5.6525 38 1 0.6716 1.7966 1.7131 39 1 2.5517 2.2202 3.3623 40 1 3.7891 1.9345 2.0250 41 1 2.8040 3.8620 0.7021 42 1 1.5666 4.1474 2.0395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813059179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:49 Heat of formation + Delta-G solvation = -87.353815 kcal Electronic energy + Delta-G solvation = -28206.101138 eV Core-core repulsion = 24068.332543 eV Total energy + Delta-G solvation = -4137.768595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.28933 -40.84967 -39.24681 -37.71968 -36.57777 -36.20047 -33.96942 -32.43342 -31.11872 -29.46568 -28.36528 -26.39762 -25.58669 -25.28563 -22.88457 -22.37935 -21.89166 -20.78003 -19.25944 -18.38542 -17.90533 -17.57857 -16.88730 -16.20535 -15.76989 -15.38698 -15.27691 -15.06186 -14.88553 -14.77205 -14.31674 -13.83010 -13.68548 -13.58174 -13.47094 -13.34173 -13.12599 -12.47747 -12.33072 -12.19598 -12.07895 -11.78840 -11.67306 -11.42240 -11.39402 -11.11536 -11.00020 -10.76920 -10.56137 -10.48210 -10.30720 -9.92953 -9.82509 -9.64116 -9.03880 -8.95937 -7.93548 -7.16131 -6.61914 -4.20185 1.74563 2.08090 2.78152 3.05464 3.06692 3.11319 3.21207 3.69774 3.83147 3.97771 4.28685 4.55520 4.70882 4.82958 4.90207 4.93485 4.95478 5.07124 5.08098 5.24412 5.39828 5.47439 5.55955 5.56859 5.66866 5.71108 5.75682 5.80045 5.91185 5.99749 6.00732 6.16828 6.20927 6.27274 6.49618 6.71049 6.87802 6.89047 6.95112 7.02944 7.17028 7.59876 7.80165 7.87567 8.45630 8.83189 9.43580 10.54562 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.004657 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.493242 B = 6010.880774 C = 7808.431806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.363 6.363 3 C 0.138 3.862 4 C -0.143 4.143 5 C 0.491 3.509 6 O -0.523 6.523 7 N -0.642 5.642 8 C 0.054 3.946 9 C -0.049 4.049 10 C -0.231 4.231 11 C 0.132 3.868 12 F -0.151 7.151 13 C -0.260 4.260 14 C 0.159 3.841 15 O -0.165 6.165 16 C -0.394 4.394 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.855 5.855 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.174 4.174 25 C -0.181 4.181 26 C -0.144 4.144 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.419 0.581 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.273 0.727 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 3.765 11.032 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.282 6.282 3 C 0.095 3.905 4 C -0.200 4.200 5 C 0.277 3.723 6 O -0.399 6.399 7 N -0.287 5.287 8 C -0.040 4.040 9 C -0.070 4.070 10 C -0.252 4.252 11 C 0.112 3.888 12 F -0.130 7.130 13 C -0.281 4.281 14 C 0.103 3.897 15 O -0.068 6.068 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.161 4.161 19 N -0.488 5.488 20 Si 0.766 3.234 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.192 4.192 25 C -0.218 4.218 26 C -0.181 4.181 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.256 0.744 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.779 4.011 11.276 12.286 hybrid contribution -0.044 -0.352 -1.272 1.321 sum -2.824 3.659 10.004 11.020 Atomic orbital electron populations 1.22999 0.80947 1.03330 1.00920 1.88050 1.19973 1.25438 1.94691 1.21151 0.95751 0.82764 0.90846 1.21894 0.90239 1.03352 1.04479 1.21199 0.78091 0.88511 0.84487 1.90647 1.51680 1.14862 1.82751 1.43287 1.64800 1.11633 1.08941 1.16909 1.04922 0.98219 0.83956 1.20619 0.94216 0.93188 0.98950 1.20470 1.09701 1.04388 0.90607 1.17465 0.97330 0.91053 0.82942 1.91413 1.89189 1.76976 1.55408 1.20864 1.07727 0.98909 1.00561 1.18840 0.90605 0.89107 0.91168 1.83945 1.55454 1.35414 1.31955 1.21344 1.35505 1.06048 0.84042 0.88845 1.25296 0.96437 0.94416 0.99989 1.70017 1.36988 1.09716 1.32123 0.85688 0.79390 0.78225 0.80082 1.19726 1.20103 1.19042 1.22493 0.99316 1.00851 0.96568 1.23189 0.98056 1.03713 0.96807 1.22841 1.02944 0.90244 1.02077 0.93524 0.93152 0.88880 0.90121 0.90337 0.90387 0.74367 0.84227 0.85960 0.83932 0.91729 0.87348 0.88912 0.87948 0.87934 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.16 101.05 1.03 1.20 16 2 O -0.36 -5.25 9.71 -35.23 -0.34 -5.59 16 3 C 0.14 1.97 0.93 -91.77 -0.09 1.88 16 4 C -0.14 -1.91 7.42 37.16 0.28 -1.64 16 5 C 0.49 8.40 5.44 -10.99 -0.06 8.34 16 6 O -0.52 -9.68 11.89 5.55 0.07 -9.61 16 7 N -0.64 -12.00 4.10 -9.72 -0.04 -12.04 16 8 C 0.05 1.12 6.33 -83.45 -0.53 0.59 16 9 C -0.05 -0.94 8.70 -39.42 -0.34 -1.28 16 10 C -0.23 -4.26 10.02 -39.48 -0.40 -4.66 16 11 C 0.13 2.62 7.29 -39.43 -0.29 2.34 16 12 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 13 C -0.26 -5.65 9.11 -39.36 -0.36 -6.01 16 14 C 0.16 3.66 6.66 -38.94 -0.26 3.40 16 15 O -0.17 -4.31 9.31 0.04 0.00 -4.31 16 16 C -0.39 -10.34 9.44 30.88 0.29 -10.05 16 17 H 0.09 2.31 5.30 -52.49 -0.28 2.04 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 19 N -0.85 -23.27 13.67 55.48 0.76 -22.52 16 20 Si 0.94 19.60 29.55 -169.99 -5.02 14.57 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 C -0.17 -2.14 4.98 -90.62 -0.45 -2.59 16 25 C -0.18 -1.85 9.57 -26.73 -0.26 -2.11 16 26 C -0.14 -1.71 8.53 -26.73 -0.23 -1.93 16 27 H 0.05 0.50 6.20 -51.93 -0.32 0.18 16 28 H 0.05 0.67 6.27 -51.93 -0.33 0.35 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.92 6.96 -51.93 -0.36 0.56 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 0.99 7.07 -51.93 -0.37 0.62 16 33 H 0.42 7.96 7.60 -40.82 -0.31 7.65 16 34 H 0.14 2.54 6.20 -52.49 -0.33 2.21 16 35 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.14 3.11 5.71 -52.48 -0.30 2.81 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.11 1.27 6.33 -51.93 -0.33 0.94 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.99 5.85 -51.93 -0.30 0.69 16 41 H 0.10 1.37 6.91 -51.93 -0.36 1.01 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -28.70 346.23 -5.91 -34.61 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -4.83 Total: 13.99 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.75 Total: -11.48 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.72 Total: -34.56 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.28 Total: -19.51 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.70 -5.91 -34.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.747 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds