Wall clock time and date at job start Tue Mar 31 2020 13:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99389 * 2 1 4 4 C 1.53001 * 109.46749 * 184.84290 * 3 2 1 5 5 C 1.50699 * 109.47375 * 304.84254 * 3 2 1 6 6 O 1.21294 * 120.00039 * 145.00119 * 5 3 2 7 7 N 1.34776 * 119.99939 * 325.00581 * 5 3 2 8 8 C 1.40090 * 119.99980 * 184.37535 * 7 5 3 9 9 C 1.38708 * 120.07203 * 325.37539 * 8 7 5 10 10 C 1.38194 * 120.01429 * 179.69777 * 9 8 7 11 11 C 1.38547 * 120.17883 * 0.59995 * 10 9 8 12 12 F 1.35098 * 119.92299 * 179.69620 * 11 10 9 13 13 C 1.38338 * 120.15193 * 359.67871 * 11 10 9 14 14 C 1.38739 * 119.98118 * 0.02562 * 13 11 10 15 15 O 1.35770 * 120.09341 * 179.97438 * 14 13 11 16 16 C 1.34809 * 116.99614 * 5.77638 * 15 14 13 17 17 H 1.07997 * 120.00205 * 5.46816 * 16 15 14 18 18 C 1.38638 * 119.99775 * 185.46346 * 16 15 14 19 19 N 1.31572 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99916 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46895 * 89.99750 * 20 18 16 22 22 H 1.48493 * 109.46847 * 210.00011 * 20 18 16 23 23 H 1.48498 * 109.46817 * 329.99816 * 20 18 16 24 24 C 1.53001 * 109.47246 * 64.84578 * 3 2 1 25 25 C 1.53001 * 117.51727 * 111.02358 * 24 3 2 26 26 C 1.52997 * 60.00141 * 107.48055 * 25 24 3 27 27 H 1.08998 * 109.47288 * 304.97351 * 1 2 3 28 28 H 1.09000 * 109.47303 * 64.97901 * 1 2 3 29 29 H 1.09001 * 109.46584 * 184.97539 * 1 2 3 30 30 H 1.08999 * 109.47699 * 300.00225 * 4 3 2 31 31 H 1.09004 * 109.47072 * 60.00023 * 4 3 2 32 32 H 1.09000 * 109.47241 * 179.97438 * 4 3 2 33 33 H 0.97004 * 120.00244 * 4.37085 * 7 5 3 34 34 H 1.08000 * 119.99389 * 359.97438 * 9 8 7 35 35 H 1.08010 * 119.90729 * 180.29846 * 10 9 8 36 36 H 1.08005 * 120.01069 * 180.02562 * 13 11 10 37 37 H 0.96999 * 120.00057 * 179.97438 * 19 18 16 38 38 H 1.08993 * 115.55174 * 325.32634 * 24 3 2 39 39 H 1.09001 * 117.50285 * 214.97105 * 25 24 3 40 40 H 1.09004 * 117.50148 * 359.97438 * 25 24 3 41 41 H 1.08995 * 117.50394 * 252.50953 * 26 25 24 42 42 H 1.09005 * 117.50283 * 107.48435 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5306 1.1869 -0.1218 5 6 1.4728 2.0946 -1.1661 6 8 1.2844 3.2877 -1.0557 7 7 1.2015 1.4745 -2.3315 8 6 0.7895 2.2212 -3.4429 9 6 -0.0035 3.3460 -3.2694 10 6 -0.4040 4.0853 -4.3661 11 6 -0.0260 3.6994 -5.6419 12 9 -0.4256 4.4225 -6.7108 13 6 0.7600 2.5756 -5.8237 14 6 1.1709 1.8321 -4.7268 15 8 1.9419 0.7285 -4.9027 16 6 2.3731 0.4764 -6.1548 17 1 2.1773 1.1847 -6.9462 18 6 3.0681 -0.6920 -6.4265 19 7 3.3072 -1.5547 -5.4623 20 14 3.6663 -1.0410 -8.1615 21 1 5.0310 -0.4822 -8.3363 22 1 3.6993 -2.5082 -8.3879 23 1 2.7440 -0.4098 -9.1393 24 6 1.6573 2.0208 1.3057 25 6 2.7914 2.2763 2.3004 26 6 2.1973 3.4388 1.5026 27 1 -0.3634 0.5890 0.8421 28 1 -0.3634 0.4346 -0.9312 29 1 -0.3632 -1.0238 0.0891 30 1 3.9193 0.6162 0.7216 31 1 3.7819 0.6773 -1.0520 32 1 3.9739 2.1827 -0.1223 33 1 1.2915 0.5111 -2.4009 34 1 -0.3043 3.6465 -2.2766 35 1 -1.0175 4.9635 -4.2285 36 1 1.0537 2.2771 -6.8193 37 1 3.7931 -2.3723 -5.6525 38 1 0.6716 1.7966 1.7131 39 1 2.5517 2.2202 3.3623 40 1 3.7891 1.9345 2.0250 41 1 2.8040 3.8620 0.7021 42 1 1.5666 4.1474 2.0395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813059179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:48 Heat of formation + Delta-G solvation = -104.099155 kcal Electronic energy + Delta-G solvation = -28206.827271 eV Core-core repulsion = 24068.332543 eV Total energy + Delta-G solvation = -4138.494728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86923 -42.18370 -40.81796 -39.11370 -37.95532 -37.47571 -35.45751 -34.33092 -32.23627 -31.12770 -29.95578 -27.48772 -27.36873 -26.45121 -24.35679 -23.63625 -23.15640 -22.18251 -20.51715 -20.18664 -19.45453 -18.89616 -18.35444 -17.44699 -17.12045 -16.99311 -16.71416 -16.60856 -16.19827 -16.05326 -15.92822 -15.47118 -15.28348 -15.07988 -14.89911 -14.49010 -14.28951 -14.03870 -13.80731 -13.50340 -13.43415 -13.18214 -13.07349 -12.77866 -12.61037 -12.46364 -12.29026 -12.15048 -12.10416 -11.70204 -11.51209 -11.27617 -11.15228 -10.92312 -10.84742 -10.32469 -9.61091 -8.82396 -8.52317 -6.19287 0.11707 0.41967 1.36051 1.38318 1.43171 1.51582 1.90289 2.12928 2.59027 2.61616 2.98935 3.02939 3.13720 3.41148 3.51805 3.54914 3.79683 3.91379 4.02610 4.13439 4.16940 4.30030 4.32017 4.40602 4.49269 4.54290 4.59621 4.73735 4.79069 4.86897 4.88541 4.98362 4.99482 5.05093 5.18597 5.25964 5.27204 5.30672 5.31990 5.47299 5.87247 5.90793 6.00797 6.40196 6.91230 7.00217 7.59420 8.67903 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.004657 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.493242 B = 6010.880774 C = 7808.431806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.376 6.376 3 C 0.141 3.859 4 C -0.142 4.142 5 C 0.491 3.509 6 O -0.536 6.536 7 N -0.647 5.647 8 C 0.055 3.945 9 C -0.049 4.049 10 C -0.205 4.205 11 C 0.126 3.874 12 F -0.144 7.144 13 C -0.266 4.266 14 C 0.132 3.868 15 O -0.201 6.201 16 C -0.418 4.418 17 H 0.098 0.902 18 C -0.007 4.007 19 N -0.902 5.902 20 Si 1.011 2.989 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.257 1.257 24 C -0.187 4.187 25 C -0.158 4.158 26 C -0.151 4.151 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.275 0.725 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 4.936 12.191 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.294 6.294 3 C 0.099 3.901 4 C -0.199 4.199 5 C 0.279 3.721 6 O -0.413 6.413 7 N -0.291 5.291 8 C -0.040 4.040 9 C -0.069 4.069 10 C -0.225 4.225 11 C 0.106 3.894 12 F -0.122 7.122 13 C -0.286 4.286 14 C 0.078 3.922 15 O -0.106 6.106 16 C -0.493 4.493 17 H 0.116 0.884 18 C -0.208 4.208 19 N -0.538 5.538 20 Si 0.831 3.169 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.181 1.181 24 C -0.205 4.205 25 C -0.195 4.195 26 C -0.188 4.188 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.442 5.225 12.456 13.939 hybrid contribution 0.000 -0.510 -1.509 1.593 sum -3.442 4.715 10.947 12.406 Atomic orbital electron populations 1.23146 0.79868 1.04777 1.00777 1.88039 1.21224 1.25494 1.94682 1.21179 0.95817 0.82642 0.90500 1.21930 0.90054 1.03751 1.04188 1.21854 0.77119 0.88625 0.84506 1.90620 1.52147 1.15523 1.83026 1.43418 1.65216 1.11400 1.09074 1.17220 1.04335 0.98505 0.83947 1.20836 0.93655 0.92522 0.99884 1.20883 1.07752 1.04412 0.89416 1.17461 0.97384 0.90726 0.83817 1.91432 1.89018 1.76596 1.55195 1.20937 1.08063 0.99574 1.00063 1.19224 0.91376 0.89038 0.92564 1.83924 1.57579 1.37100 1.32021 1.21729 1.36380 1.06742 0.84470 0.88420 1.26399 0.96283 0.93883 1.04186 1.70132 1.38795 1.10519 1.34399 0.84680 0.78980 0.78299 0.74923 1.19022 1.19339 1.18072 1.22503 1.00758 1.01114 0.96156 1.23304 0.97457 1.01248 0.97476 1.22821 1.03310 0.90441 1.02265 0.91727 0.94779 0.87097 0.87742 0.92856 0.89855 0.74833 0.82835 0.82318 0.84666 0.91536 0.86487 0.86635 0.87365 0.89833 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 10.16 113.37 1.15 1.39 16 2 O -0.38 -10.66 9.71 -148.98 -1.45 -12.11 16 3 C 0.14 3.95 0.93 -11.54 -0.01 3.93 16 4 C -0.14 -3.77 7.42 71.98 0.53 -3.24 16 5 C 0.49 16.75 5.44 87.66 0.48 17.23 16 6 O -0.54 -19.42 11.89 -3.07 -0.04 -19.46 16 7 N -0.65 -24.76 4.10 -303.04 -1.24 -26.01 16 8 C 0.05 2.27 6.33 38.23 0.24 2.52 16 9 C -0.05 -1.78 8.70 22.37 0.19 -1.59 16 10 C -0.20 -7.02 10.02 22.33 0.22 -6.79 16 11 C 0.13 4.84 7.29 22.37 0.16 5.01 16 12 F -0.14 -5.21 17.26 44.97 0.78 -4.43 16 13 C -0.27 -11.72 9.11 22.41 0.20 -11.51 16 14 C 0.13 6.25 6.66 22.69 0.15 6.40 16 15 O -0.20 -11.05 9.31 -22.75 -0.21 -11.26 16 16 C -0.42 -22.87 9.44 67.92 0.64 -22.23 16 17 H 0.10 5.03 5.30 -2.91 -0.02 5.02 16 18 C -0.01 -0.39 5.49 84.83 0.47 0.07 16 19 N -0.90 -51.19 13.67 21.61 0.30 -50.89 16 20 Si 1.01 40.89 29.55 68.60 2.03 42.92 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.19 -4.23 4.98 -10.79 -0.05 -4.29 16 25 C -0.16 -2.77 9.57 30.59 0.29 -2.48 16 26 C -0.15 -3.29 8.53 30.59 0.26 -3.03 16 27 H 0.06 1.27 6.20 -2.39 -0.01 1.26 16 28 H 0.03 0.91 6.27 -2.39 -0.01 0.89 16 29 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.10 2.23 6.96 -2.39 -0.02 2.22 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.08 7.07 -2.39 -0.02 2.06 16 33 H 0.41 16.57 7.60 -92.71 -0.70 15.86 16 34 H 0.15 5.25 6.20 -2.91 -0.02 5.23 16 35 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.14 6.07 5.71 -2.91 -0.02 6.06 16 37 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.12 2.44 6.33 -2.39 -0.02 2.42 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.78 5.85 -2.38 -0.01 1.77 16 41 H 0.08 2.15 6.91 -2.39 -0.02 2.13 16 42 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -63.65 346.23 5.49 -58.16 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: 0.39 Total: 41.68 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.94 Total: -18.60 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -0.95 Total: -76.90 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.70 Total: -42.83 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -63.65 5.49 -58.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.937 kcal (2) G-P(sol) polarization free energy of solvation -63.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds