Wall clock time and date at job start Tue Mar 31 2020 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99729 * 2 1 4 4 C 1.52996 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47117 * 60.00650 * 4 3 2 6 6 C 1.52995 * 109.47630 * 300.00310 * 4 3 2 7 7 C 1.53007 * 109.47000 * 179.97438 * 4 3 2 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 4 3 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 4 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47334 * 89.99556 * 22 20 18 24 24 H 1.48501 * 109.47313 * 210.00161 * 22 20 18 25 25 H 1.48500 * 109.46994 * 329.99936 * 22 20 18 26 26 H 1.08998 * 109.47473 * 60.00141 * 1 2 3 27 27 H 1.09005 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47282 * 299.99669 * 1 2 3 29 29 H 1.09005 * 109.46896 * 59.99964 * 3 2 1 30 30 H 1.09003 * 109.47112 * 299.99979 * 3 2 1 31 31 H 1.09001 * 109.47344 * 179.97438 * 5 4 3 32 32 H 1.09009 * 109.46464 * 299.99667 * 5 4 3 33 33 H 1.08995 * 109.47223 * 59.99608 * 5 4 3 34 34 H 1.09005 * 109.46871 * 300.00193 * 6 4 3 35 35 H 1.09000 * 109.47066 * 59.99438 * 6 4 3 36 36 H 1.08992 * 109.47476 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47129 * 60.00596 * 7 4 3 38 38 H 1.09003 * 109.47146 * 300.00209 * 7 4 3 39 39 H 0.97003 * 120.00826 * 359.97438 * 8 7 4 40 40 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 41 41 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 42 42 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 44 44 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4254 -1.2484 6 6 3.9864 0.4257 1.2501 7 6 4.1576 2.5826 0.0000 8 7 5.6180 2.4668 0.0000 9 6 6.3819 3.5773 0.0000 10 8 5.8589 4.6751 0.0005 11 6 7.8517 3.4609 0.0006 12 6 8.4571 2.2021 0.0017 13 6 9.8314 2.1000 0.0027 14 6 10.6194 3.2410 0.0033 15 6 10.0381 4.4916 0.0033 16 6 8.6525 4.6157 0.0022 17 16 7.9059 6.2117 0.0015 18 6 9.3370 7.2188 -0.2046 19 1 10.2995 6.7605 -0.3781 20 6 9.2275 8.6012 -0.1440 21 7 8.0550 9.1595 0.0669 22 14 10.7444 9.6689 -0.3632 23 1 10.9171 9.9942 -1.8018 24 1 10.5821 10.9249 0.4123 25 1 11.9401 8.9364 0.1256 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 5.0740 0.3397 -1.2482 32 1 3.5440 -0.5705 -1.2484 33 1 3.6661 0.9661 -2.1385 34 1 3.6644 0.9667 2.1399 35 1 3.5431 -0.5701 1.2501 36 1 5.0729 0.3393 1.2503 37 1 3.8357 3.1240 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0353 1.5911 0.0008 40 1 7.8489 1.3098 -0.0025 41 1 10.2974 1.1257 0.0040 42 1 11.6956 3.1495 0.0037 43 1 10.6590 5.3752 0.0041 44 1 7.9785 10.1255 0.1097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816982737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:02 Heat of formation + Delta-G solvation = -63.778849 kcal Electronic energy + Delta-G solvation = -24682.079290 eV Core-core repulsion = 21111.546158 eV Total energy + Delta-G solvation = -3570.533132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.80448 -38.72516 -37.47470 -36.29610 -33.06167 -32.74513 -30.53511 -30.25834 -27.67974 -27.39942 -26.79385 -25.81657 -25.20826 -22.85268 -21.88141 -20.09711 -19.37039 -18.17820 -17.23501 -16.63848 -16.12455 -15.99955 -15.50484 -15.13535 -15.07709 -15.01308 -14.44029 -13.89172 -13.86257 -13.73830 -13.51387 -13.33939 -12.97581 -12.82544 -12.73674 -12.09638 -11.98258 -11.82592 -11.70638 -11.57573 -11.23034 -11.19332 -11.02907 -11.00712 -10.88887 -10.74281 -10.31561 -9.91424 -9.80844 -9.63954 -9.48821 -8.75634 -8.71073 -8.31774 -8.05272 -6.52399 -6.45378 -4.15774 1.54839 2.02906 3.11054 3.13351 3.19979 3.24704 3.43804 3.54269 3.80725 4.07661 4.49518 4.56078 4.57341 4.71687 4.95587 5.02088 5.04988 5.11476 5.14413 5.30928 5.31230 5.32742 5.36953 5.40885 5.56596 5.60823 5.67209 5.72166 5.83955 5.85503 5.92425 6.00606 6.12737 6.18924 6.19007 6.39885 6.60575 6.75318 6.85786 6.89722 7.04200 7.14463 7.45582 7.60147 7.92377 8.17010 8.81474 9.00869 10.57908 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002942 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.695999 B = 9514.939362 C =10799.965887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.073 3.927 4 C -0.074 4.074 5 C -0.138 4.138 6 C -0.138 4.138 7 C 0.134 3.866 8 N -0.734 5.734 9 C 0.552 3.448 10 O -0.510 6.510 11 C -0.177 4.177 12 C -0.061 4.061 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.057 4.057 17 S 0.184 5.816 18 C -0.596 4.596 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.395 0.605 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -18.193 0.059 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.004 4.004 4 C -0.075 4.075 5 C -0.196 4.196 6 C -0.195 4.195 7 C 0.010 3.990 8 N -0.390 5.390 9 C 0.341 3.659 10 O -0.387 6.387 11 C -0.192 4.192 12 C -0.081 4.081 13 C -0.211 4.211 14 C -0.099 4.099 15 C -0.178 4.178 16 C -0.177 4.177 17 S 0.449 5.551 18 C -0.742 4.742 19 H 0.108 0.892 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.192 1.192 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.231 0.769 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.389 -16.597 0.188 19.581 hybrid contribution 2.252 0.033 -0.231 2.264 sum -8.137 -16.564 -0.043 18.455 Atomic orbital electron populations 1.22727 0.81159 1.02600 1.00023 1.87845 1.19415 1.27787 1.95420 1.22456 0.92640 0.84628 1.00653 1.20790 0.93450 0.95654 0.97569 1.21809 1.01020 1.00601 0.96127 1.21804 1.01025 1.00599 0.96119 1.21145 0.80591 0.94773 1.02513 1.45811 1.05847 1.09024 1.78296 1.18306 0.86930 0.83889 0.76774 1.90783 1.73886 1.25563 1.48442 1.19106 0.91463 0.93045 1.15561 1.20883 0.94897 0.95015 0.97348 1.20634 0.93432 0.97763 1.09298 1.21085 0.98919 0.92636 0.97276 1.21436 0.94072 0.98132 1.04180 1.23087 0.96459 1.01211 0.96895 1.84761 1.07790 0.87249 1.75342 1.24061 0.98458 0.94640 1.57054 0.89158 1.25099 0.97272 0.97248 0.93159 1.69979 1.23359 1.12047 1.43708 0.86148 0.81534 0.79181 0.78689 1.19874 1.20486 1.19243 0.94111 0.89741 0.94104 0.92871 0.92864 0.92542 0.91611 0.92511 0.92509 0.91614 0.92540 0.91442 0.91441 0.76904 0.87295 0.87082 0.87028 0.84380 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.65 9.35 -35.23 -0.33 -3.98 16 3 C 0.07 0.67 4.81 37.16 0.18 0.85 16 4 C -0.07 -0.72 0.61 -154.51 -0.09 -0.82 16 5 C -0.14 -1.29 8.15 37.16 0.30 -0.98 16 6 C -0.14 -1.28 8.16 37.16 0.30 -0.98 16 7 C 0.13 1.68 4.56 -4.04 -0.02 1.66 16 8 N -0.73 -10.40 4.91 -61.38 -0.30 -10.71 16 9 C 0.55 10.68 7.75 -12.51 -0.10 10.58 16 10 O -0.51 -11.91 13.77 5.27 0.07 -11.84 16 11 C -0.18 -3.49 5.89 -104.75 -0.62 -4.11 16 12 C -0.06 -0.97 9.53 -39.20 -0.37 -1.35 16 13 C -0.19 -2.87 10.02 -39.58 -0.40 -3.27 16 14 C -0.08 -1.32 10.03 -39.55 -0.40 -1.71 16 15 C -0.15 -3.21 9.22 -39.38 -0.36 -3.57 16 16 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 17 S 0.18 4.96 18.56 -107.50 -2.00 2.96 16 18 C -0.60 -16.46 9.00 30.94 0.28 -16.18 16 19 H 0.09 2.37 4.98 -52.48 -0.26 2.11 16 20 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 21 N -0.86 -24.80 13.22 55.49 0.73 -24.07 16 22 Si 0.92 20.73 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 32 H 0.06 0.60 7.68 -51.92 -0.40 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 36 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.39 4.59 4.19 -40.82 -0.17 4.42 16 40 H 0.11 1.31 6.40 -52.49 -0.34 0.97 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.14 3.02 5.04 -52.49 -0.26 2.75 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -32.06 368.47 -8.13 -40.19 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.33 Total: 4.09 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.51 Total: -17.90 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.43 Total: -34.77 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.26 Total: -15.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.00 Total: 2.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.06 -8.13 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816982737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.587 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds