Wall clock time and date at job start Tue Mar 31 2020 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99729 * 2 1 4 4 C 1.52996 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47117 * 60.00650 * 4 3 2 6 6 C 1.52995 * 109.47630 * 300.00310 * 4 3 2 7 7 C 1.53007 * 109.47000 * 179.97438 * 4 3 2 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 4 3 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 4 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47334 * 89.99556 * 22 20 18 24 24 H 1.48501 * 109.47313 * 210.00161 * 22 20 18 25 25 H 1.48500 * 109.46994 * 329.99936 * 22 20 18 26 26 H 1.08998 * 109.47473 * 60.00141 * 1 2 3 27 27 H 1.09005 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47282 * 299.99669 * 1 2 3 29 29 H 1.09005 * 109.46896 * 59.99964 * 3 2 1 30 30 H 1.09003 * 109.47112 * 299.99979 * 3 2 1 31 31 H 1.09001 * 109.47344 * 179.97438 * 5 4 3 32 32 H 1.09009 * 109.46464 * 299.99667 * 5 4 3 33 33 H 1.08995 * 109.47223 * 59.99608 * 5 4 3 34 34 H 1.09005 * 109.46871 * 300.00193 * 6 4 3 35 35 H 1.09000 * 109.47066 * 59.99438 * 6 4 3 36 36 H 1.08992 * 109.47476 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47129 * 60.00596 * 7 4 3 38 38 H 1.09003 * 109.47146 * 300.00209 * 7 4 3 39 39 H 0.97003 * 120.00826 * 359.97438 * 8 7 4 40 40 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 41 41 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 42 42 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 44 44 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4254 -1.2484 6 6 3.9864 0.4257 1.2501 7 6 4.1576 2.5826 0.0000 8 7 5.6180 2.4668 0.0000 9 6 6.3819 3.5773 0.0000 10 8 5.8589 4.6751 0.0005 11 6 7.8517 3.4609 0.0006 12 6 8.4571 2.2021 0.0017 13 6 9.8314 2.1000 0.0027 14 6 10.6194 3.2410 0.0033 15 6 10.0381 4.4916 0.0033 16 6 8.6525 4.6157 0.0022 17 16 7.9059 6.2117 0.0015 18 6 9.3370 7.2188 -0.2046 19 1 10.2995 6.7605 -0.3781 20 6 9.2275 8.6012 -0.1440 21 7 8.0550 9.1595 0.0669 22 14 10.7444 9.6689 -0.3632 23 1 10.9171 9.9942 -1.8018 24 1 10.5821 10.9249 0.4123 25 1 11.9401 8.9364 0.1256 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 5.0740 0.3397 -1.2482 32 1 3.5440 -0.5705 -1.2484 33 1 3.6661 0.9661 -2.1385 34 1 3.6644 0.9667 2.1399 35 1 3.5431 -0.5701 1.2501 36 1 5.0729 0.3393 1.2503 37 1 3.8357 3.1240 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0353 1.5911 0.0008 40 1 7.8489 1.3098 -0.0025 41 1 10.2974 1.1257 0.0040 42 1 11.6956 3.1495 0.0037 43 1 10.6590 5.3752 0.0041 44 1 7.9785 10.1255 0.1097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816982737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:02 Heat of formation + Delta-G solvation = -84.545731 kcal Electronic energy + Delta-G solvation = -24682.979810 eV Core-core repulsion = 21111.546158 eV Total energy + Delta-G solvation = -3571.433652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15057 -39.71011 -38.85013 -37.30408 -34.76053 -34.33034 -31.97483 -31.76779 -28.32723 -28.14546 -27.85146 -27.76095 -26.08628 -24.25317 -23.34931 -21.59273 -20.41605 -19.75607 -18.75284 -17.50334 -17.43443 -17.07553 -16.83486 -16.67523 -16.23370 -16.06586 -15.83272 -15.33645 -15.29648 -14.94617 -14.68466 -14.50059 -14.17164 -14.06481 -13.79870 -13.38769 -13.29380 -12.98655 -12.88169 -12.72348 -12.66661 -12.54589 -12.42659 -12.05910 -11.83389 -11.80849 -11.54184 -11.47594 -11.39939 -11.25825 -10.57725 -10.40704 -10.11926 -9.90776 -9.74521 -8.45712 -8.44648 -6.23564 0.05051 0.55015 1.26944 1.36522 1.45244 1.65479 2.04045 2.12224 2.25003 2.88211 2.92997 3.05562 3.25802 3.70226 3.76662 3.91297 3.99186 4.04481 4.28191 4.32943 4.42676 4.46819 4.58525 4.61506 4.62893 4.64800 4.74593 4.79011 4.87255 4.88939 4.89384 5.04515 5.05070 5.11065 5.16142 5.37218 5.41538 5.43356 5.46271 5.51362 5.58667 5.68702 6.10790 6.17303 6.22835 6.63535 6.96460 7.37518 8.60863 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002942 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.695999 B = 9514.939362 C =10799.965887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.073 3.927 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.136 4.136 7 C 0.134 3.866 8 N -0.708 5.708 9 C 0.546 3.454 10 O -0.557 6.557 11 C -0.181 4.181 12 C -0.054 4.054 13 C -0.157 4.157 14 C -0.070 4.070 15 C -0.175 4.175 16 C -0.073 4.073 17 S 0.063 5.937 18 C -0.602 4.602 19 H 0.094 0.906 20 C 0.023 3.977 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.257 1.257 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.411 0.589 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -22.652 -0.082 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.004 4.004 4 C -0.065 4.065 5 C -0.193 4.193 6 C -0.193 4.193 7 C 0.010 3.990 8 N -0.363 5.363 9 C 0.334 3.666 10 O -0.437 6.437 11 C -0.194 4.194 12 C -0.074 4.074 13 C -0.179 4.179 14 C -0.091 4.091 15 C -0.200 4.200 16 C -0.191 4.191 17 S 0.322 5.678 18 C -0.748 4.748 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.814 3.186 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.181 1.181 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.250 0.750 40 H 0.176 0.824 41 H 0.184 0.816 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.707 -21.208 0.047 22.926 hybrid contribution 1.704 0.944 -0.182 1.957 sum -7.003 -20.265 -0.135 21.441 Atomic orbital electron populations 1.22905 0.79820 1.03776 1.00575 1.87806 1.20894 1.27560 1.95526 1.22412 0.92247 0.84891 1.00866 1.20683 0.93788 0.93608 0.98438 1.21797 1.01469 1.00642 0.95406 1.21792 1.01477 1.00640 0.95396 1.21222 0.79501 0.96771 1.01543 1.45579 1.06353 1.08353 1.76032 1.18497 0.87368 0.84287 0.76406 1.90785 1.74582 1.27744 1.50579 1.19482 0.91758 0.93817 1.14361 1.21427 0.96068 0.94662 0.95257 1.21328 0.92966 0.99400 1.04255 1.21542 1.01211 0.91297 0.95020 1.21448 0.93161 0.99583 1.05819 1.22989 0.97584 0.99375 0.99122 1.84928 1.10206 0.91704 1.80946 1.24251 0.98250 0.95183 1.57133 0.88803 1.26152 1.00561 0.98593 0.92899 1.70134 1.25763 1.12193 1.45963 0.85035 0.77490 0.77188 0.78851 1.19142 1.19797 1.18112 0.93582 0.88297 0.93571 0.92746 0.92745 0.91807 0.90987 0.93020 0.93006 0.90992 0.91802 0.92513 0.92524 0.74977 0.82352 0.81622 0.83296 0.86397 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.80 9.35 -148.98 -1.39 -8.19 16 3 C 0.07 1.25 4.81 71.98 0.35 1.59 16 4 C -0.06 -1.15 0.61 -52.18 -0.03 -1.18 16 5 C -0.14 -2.18 8.15 71.98 0.59 -1.59 16 6 C -0.14 -2.17 8.16 71.98 0.59 -1.59 16 7 C 0.13 3.29 4.56 86.38 0.39 3.69 16 8 N -0.71 -18.98 4.91 -466.34 -2.29 -21.27 16 9 C 0.55 21.28 7.75 86.66 0.67 21.95 16 10 O -0.56 -27.66 13.77 -4.05 -0.06 -27.71 16 11 C -0.18 -6.97 5.89 -19.95 -0.12 -7.09 16 12 C -0.05 -1.45 9.53 22.52 0.21 -1.24 16 13 C -0.16 -3.80 10.02 22.27 0.22 -3.58 16 14 C -0.07 -2.09 10.03 22.29 0.22 -1.87 16 15 C -0.17 -7.29 9.22 22.40 0.21 -7.09 16 16 C -0.07 -3.42 6.14 23.04 0.14 -3.28 16 17 S 0.06 3.69 18.56 -56.49 -1.05 2.65 16 18 C -0.60 -35.41 9.00 67.96 0.61 -34.80 16 19 H 0.09 5.21 4.98 -2.91 -0.01 5.19 16 20 C 0.02 1.36 5.49 84.87 0.47 1.82 16 21 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 22 Si 0.99 44.23 29.55 68.60 2.03 46.25 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.91 6.86 -2.39 -0.02 0.89 16 32 H 0.07 1.10 7.68 -2.38 -0.02 1.08 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 36 H 0.06 0.91 6.86 -2.39 -0.02 0.89 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 8.03 4.19 -92.71 -0.39 7.64 16 40 H 0.16 2.68 6.40 -2.91 -0.02 2.66 16 41 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.12 5.34 5.04 -2.91 -0.01 5.32 16 44 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -78.45 368.47 3.92 -74.53 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.62 Total: 22.05 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 5.77 Total: -32.69 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.00 Total: -76.88 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.45 Total: -35.91 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.05 Total: 2.65 kcal Total: -78.45 3.92 -74.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816982737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.020 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds