Wall clock time and date at job start Tue Mar 31 2020 14:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34710 * 117.00411 * 2 1 4 4 O 1.21466 * 119.99347 * 0.02562 * 3 2 1 5 5 C 1.47747 * 120.00511 * 180.02562 * 3 2 1 6 6 C 1.39734 * 120.06246 * 0.02562 * 5 3 2 7 7 C 1.38265 * 120.10926 * 179.97438 * 6 5 3 8 8 F 1.35101 * 119.87164 * 179.97438 * 7 6 5 9 9 C 1.38326 * 120.25160 * 359.97438 * 7 6 5 10 10 C 1.39644 * 120.12739 * 0.02562 * 9 7 6 11 11 C 1.47868 * 120.05829 * 179.97438 * 10 9 7 12 12 O 1.21549 * 119.99952 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99632 * 0.02562 * 11 10 9 14 14 C 1.46503 * 119.99781 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47314 * 179.97438 * 14 13 11 16 16 C 1.52991 * 109.47250 * 300.00595 * 15 14 13 17 17 C 1.53005 * 109.46565 * 60.00279 * 15 14 13 18 18 C 1.50699 * 109.47362 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99773 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00053 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00110 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 120.00016 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46753 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47457 * 119.99792 * 22 20 18 25 25 H 1.48496 * 109.46662 * 239.99777 * 22 20 18 26 26 C 1.39318 * 119.88601 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 299.99145 * 1 2 3 29 29 H 1.08998 * 109.47274 * 59.99512 * 1 2 3 30 30 H 1.07995 * 119.94345 * 0.25182 * 6 5 3 31 31 H 1.07995 * 119.93940 * 180.02562 * 9 7 6 32 32 H 0.96998 * 120.00175 * 0.02562 * 13 11 10 33 33 H 1.08999 * 109.47305 * 300.00254 * 14 13 11 34 34 H 1.09006 * 109.47033 * 60.00230 * 14 13 11 35 35 H 1.09005 * 109.47477 * 59.99648 * 16 15 14 36 36 H 1.09002 * 109.47265 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.47447 * 299.99671 * 16 15 14 38 38 H 1.09001 * 109.46863 * 60.00774 * 17 15 14 39 39 H 1.09000 * 109.46934 * 179.97438 * 17 15 14 40 40 H 1.08996 * 109.47515 * 300.00273 * 17 15 14 41 41 H 0.96994 * 120.00336 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.12770 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5391 1.2776 -0.0006 6 6 4.3014 0.1065 -0.0017 7 6 5.6822 0.1778 -0.0027 8 9 6.4146 -0.9575 -0.0032 9 6 6.3166 1.4070 -0.0033 10 6 5.5647 2.5838 -0.0022 11 6 6.2445 3.8969 -0.0022 12 8 5.5890 4.9206 -0.0017 13 7 7.5908 3.9588 -0.0038 14 6 8.2643 5.2598 -0.0043 15 6 9.7798 5.0497 -0.0055 16 6 10.1868 4.2652 1.2433 17 6 10.1848 4.2652 -1.2551 18 6 10.4725 6.3880 -0.0055 19 1 9.8901 7.2975 -0.0043 20 6 11.8498 6.4513 -0.0070 21 7 12.5590 5.3438 -0.0079 22 14 12.7086 8.1103 -0.0062 23 1 11.6927 9.1934 -0.0045 24 1 13.5591 8.2269 1.2054 25 1 13.5564 8.2292 -1.2195 26 6 4.1731 2.5184 -0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.8112 -0.8558 -0.0062 31 1 7.3954 1.4568 -0.0045 32 1 8.1138 3.1419 -0.0053 33 1 7.9739 5.8189 -0.8938 34 1 7.9760 5.8186 0.8861 35 1 9.6857 3.2971 1.2437 36 1 11.2664 4.1151 1.2422 37 1 9.8983 4.8240 2.1336 38 1 9.8948 4.8242 -2.1448 39 1 11.2645 4.1158 -1.2563 40 1 9.6837 3.2973 -1.2548 41 1 13.5280 5.3883 -0.0093 42 1 3.5878 3.4261 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822398784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:57 Heat of formation + Delta-G solvation = -143.315870 kcal Electronic energy + Delta-G solvation = -26662.452742 eV Core-core repulsion = 22522.257449 eV Total energy + Delta-G solvation = -4140.195292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.23605 -40.99409 -39.97002 -38.25282 -36.78401 -36.42919 -33.60663 -32.24212 -30.98593 -30.74540 -28.20790 -25.99321 -25.79383 -25.26559 -24.80701 -23.30619 -21.68334 -20.43515 -19.11961 -18.56268 -17.86514 -16.92866 -16.76782 -16.61315 -16.34045 -16.06095 -15.94617 -15.76323 -15.01596 -14.90995 -14.68093 -14.16114 -13.79680 -13.58399 -13.45630 -13.04090 -12.96998 -12.56928 -12.33407 -12.33028 -12.25242 -12.13247 -11.45873 -11.26112 -11.20765 -11.00263 -10.92737 -10.70179 -10.45814 -10.25399 -9.86235 -9.70851 -9.64213 -9.37374 -9.22133 -8.84471 -8.57350 -8.39973 -6.06586 -4.16713 0.04150 0.52948 1.93006 2.18443 2.81680 3.24963 3.33568 3.36099 3.42507 3.55556 3.68511 4.17573 4.33101 4.37295 4.60400 4.66933 4.72605 4.76188 4.80927 5.09438 5.16212 5.20550 5.32178 5.46978 5.71386 5.76317 5.94055 6.13154 6.24074 6.25700 6.43094 6.66046 6.74232 6.84064 6.87989 6.94852 7.28201 7.30545 7.49206 7.64791 7.84509 7.94999 8.07782 8.31517 8.45608 8.84030 9.49534 10.94964 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.002536 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.329708 B =11037.266659 C =11934.238465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.493 6.493 5 C -0.107 4.107 6 C -0.081 4.081 7 C 0.087 3.913 8 F -0.129 7.129 9 C -0.087 4.087 10 C -0.104 4.104 11 C 0.548 3.452 12 O -0.536 6.536 13 N -0.706 5.706 14 C 0.130 3.870 15 C 0.055 3.945 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.505 4.505 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.009 4.009 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.398 0.602 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.005 0.995 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.005 0.995 41 H 0.260 0.740 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -15.051 0.005 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.357 3.643 4 O -0.381 6.381 5 C -0.109 4.109 6 C -0.100 4.100 7 C 0.068 3.932 8 F -0.107 7.107 9 C -0.106 4.106 10 C -0.107 4.107 11 C 0.332 3.668 12 O -0.415 6.415 13 N -0.357 5.357 14 C 0.008 3.992 15 C 0.054 3.946 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.028 4.028 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.550 -14.090 0.006 22.507 hybrid contribution 0.769 0.210 -0.001 0.797 sum -16.781 -13.881 0.005 21.778 Atomic orbital electron populations 1.23334 0.75443 1.03982 1.02933 1.86524 1.23964 1.32312 1.84326 1.20921 0.88607 0.81716 0.73099 1.90889 1.66407 1.35897 1.44879 1.18739 0.89500 0.93736 1.08904 1.21550 0.91986 0.99813 0.96628 1.17286 0.88966 0.82281 1.04715 1.91568 1.76919 1.48265 1.93987 1.21710 1.01835 0.90556 0.96535 1.19939 0.93518 0.93687 1.03597 1.17964 0.83017 0.87703 0.78068 1.90790 1.65223 1.35134 1.50337 1.46284 1.05226 1.11827 1.72334 1.21841 0.94698 0.81656 1.00990 1.18384 0.87246 0.96057 0.92902 1.21850 1.04119 0.95380 0.97627 1.21851 1.04124 0.95384 0.97628 1.20996 0.91235 0.91291 1.50867 0.92288 1.24884 0.97401 0.96521 0.94741 1.69802 1.05954 1.26098 1.50552 0.86504 0.79575 0.84205 0.77542 1.19734 1.21051 1.21057 1.21449 0.93332 0.97659 0.90365 0.87753 0.91578 0.91569 0.82716 0.83215 0.76571 0.92203 0.92205 0.97632 0.89452 0.95271 0.95276 0.89447 0.97620 0.93005 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.13 9.81 -40.52 -0.40 -3.53 16 3 C 0.51 5.68 7.90 34.62 0.27 5.96 16 4 O -0.49 -6.76 16.13 -19.24 -0.31 -7.07 16 5 C -0.11 -1.15 5.87 -105.04 -0.62 -1.77 16 6 C -0.08 -0.73 9.59 -39.01 -0.37 -1.11 16 7 C 0.09 0.87 7.28 -39.54 -0.29 0.58 16 8 F -0.13 -1.33 17.26 2.25 0.04 -1.29 16 9 C -0.09 -0.95 9.51 -39.02 -0.37 -1.32 16 10 C -0.10 -1.36 5.87 -105.03 -0.62 -1.97 16 11 C 0.55 9.12 7.77 -12.32 -0.10 9.03 16 12 O -0.54 -10.77 16.34 5.32 0.09 -10.68 16 13 N -0.71 -11.89 4.91 -61.24 -0.30 -12.19 16 14 C 0.13 2.64 4.50 -4.04 -0.02 2.62 16 15 C 0.05 1.22 0.50 -155.66 -0.08 1.14 16 16 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 17 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 18 C -0.51 -12.87 8.01 -34.44 -0.28 -13.14 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 21 N -0.89 -23.07 9.35 55.43 0.52 -22.55 16 22 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.01 -0.11 9.13 -38.77 -0.35 -0.47 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.16 1.07 7.60 -52.49 -0.40 0.68 16 31 H 0.15 1.47 6.39 -52.49 -0.34 1.13 16 32 H 0.40 5.92 4.19 -40.82 -0.17 5.75 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 36 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 40 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 41 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 42 H 0.16 2.18 7.23 -52.48 -0.38 1.80 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -29.25 356.76 -6.37 -35.63 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.13 Total: 3.63 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.24 Total: -2.69 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.22 Total: -34.75 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.62 Total: -21.28 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.25 -6.37 -35.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.690 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds