Wall clock time and date at job start Tue Mar 31 2020 14:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34710 * 117.00411 * 2 1 4 4 O 1.21466 * 119.99347 * 0.02562 * 3 2 1 5 5 C 1.47747 * 120.00511 * 180.02562 * 3 2 1 6 6 C 1.39734 * 120.06246 * 0.02562 * 5 3 2 7 7 C 1.38265 * 120.10926 * 179.97438 * 6 5 3 8 8 F 1.35101 * 119.87164 * 179.97438 * 7 6 5 9 9 C 1.38326 * 120.25160 * 359.97438 * 7 6 5 10 10 C 1.39644 * 120.12739 * 0.02562 * 9 7 6 11 11 C 1.47868 * 120.05829 * 179.97438 * 10 9 7 12 12 O 1.21549 * 119.99952 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99632 * 0.02562 * 11 10 9 14 14 C 1.46503 * 119.99781 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47314 * 179.97438 * 14 13 11 16 16 C 1.52991 * 109.47250 * 300.00595 * 15 14 13 17 17 C 1.53005 * 109.46565 * 60.00279 * 15 14 13 18 18 C 1.50699 * 109.47362 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99773 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00053 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00110 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 120.00016 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46753 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47457 * 119.99792 * 22 20 18 25 25 H 1.48496 * 109.46662 * 239.99777 * 22 20 18 26 26 C 1.39318 * 119.88601 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 299.99145 * 1 2 3 29 29 H 1.08998 * 109.47274 * 59.99512 * 1 2 3 30 30 H 1.07995 * 119.94345 * 0.25182 * 6 5 3 31 31 H 1.07995 * 119.93940 * 180.02562 * 9 7 6 32 32 H 0.96998 * 120.00175 * 0.02562 * 13 11 10 33 33 H 1.08999 * 109.47305 * 300.00254 * 14 13 11 34 34 H 1.09006 * 109.47033 * 60.00230 * 14 13 11 35 35 H 1.09005 * 109.47477 * 59.99648 * 16 15 14 36 36 H 1.09002 * 109.47265 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.47447 * 299.99671 * 16 15 14 38 38 H 1.09001 * 109.46863 * 60.00774 * 17 15 14 39 39 H 1.09000 * 109.46934 * 179.97438 * 17 15 14 40 40 H 1.08996 * 109.47515 * 300.00273 * 17 15 14 41 41 H 0.96994 * 120.00336 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.12770 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5391 1.2776 -0.0006 6 6 4.3014 0.1065 -0.0017 7 6 5.6822 0.1778 -0.0027 8 9 6.4146 -0.9575 -0.0032 9 6 6.3166 1.4070 -0.0033 10 6 5.5647 2.5838 -0.0022 11 6 6.2445 3.8969 -0.0022 12 8 5.5890 4.9206 -0.0017 13 7 7.5908 3.9588 -0.0038 14 6 8.2643 5.2598 -0.0043 15 6 9.7798 5.0497 -0.0055 16 6 10.1868 4.2652 1.2433 17 6 10.1848 4.2652 -1.2551 18 6 10.4725 6.3880 -0.0055 19 1 9.8901 7.2975 -0.0043 20 6 11.8498 6.4513 -0.0070 21 7 12.5590 5.3438 -0.0079 22 14 12.7086 8.1103 -0.0062 23 1 11.6927 9.1934 -0.0045 24 1 13.5591 8.2269 1.2054 25 1 13.5564 8.2292 -1.2195 26 6 4.1731 2.5184 -0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.8112 -0.8558 -0.0062 31 1 7.3954 1.4568 -0.0045 32 1 8.1138 3.1419 -0.0053 33 1 7.9739 5.8189 -0.8938 34 1 7.9760 5.8186 0.8861 35 1 9.6857 3.2971 1.2437 36 1 11.2664 4.1151 1.2422 37 1 9.8983 4.8240 2.1336 38 1 9.8948 4.8242 -2.1448 39 1 11.2645 4.1158 -1.2563 40 1 9.6837 3.2973 -1.2548 41 1 13.5280 5.3883 -0.0093 42 1 3.5878 3.4261 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822398784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:56 Heat of formation + Delta-G solvation = -159.243881 kcal Electronic energy + Delta-G solvation = -26663.143432 eV Core-core repulsion = 22522.257449 eV Total energy + Delta-G solvation = -4140.885983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04047 -41.88086 -41.14176 -39.34736 -38.09386 -37.59685 -35.19240 -33.45692 -32.37324 -31.86542 -28.81046 -27.57565 -27.55577 -27.03355 -25.70513 -24.45493 -22.59217 -21.59630 -20.69283 -19.80103 -18.73470 -18.05566 -17.66085 -17.52287 -17.44812 -17.27902 -16.94721 -16.77672 -16.45753 -16.33733 -16.30750 -15.13651 -14.82771 -14.68339 -14.66158 -14.45031 -14.37918 -14.00397 -13.37299 -13.26729 -13.16732 -13.13528 -13.08969 -12.94606 -12.69626 -12.57290 -12.25315 -12.13603 -11.89405 -11.86787 -11.48653 -11.37582 -11.06367 -10.69356 -10.57111 -10.39619 -10.13986 -9.97364 -8.02084 -6.17188 -0.82731 -0.39905 1.03312 1.41730 1.43620 1.46642 1.55337 1.75622 2.11300 2.47706 2.48412 2.82457 3.21957 3.29786 3.47983 3.73063 3.76760 3.86186 4.17654 4.31609 4.35373 4.40418 4.42704 4.50734 4.61900 4.71745 4.72789 4.84666 4.88616 4.99476 5.05475 5.10073 5.17769 5.19996 5.29396 5.40724 5.53663 5.68033 5.68894 6.16332 6.21556 6.43785 6.49864 6.50708 6.86798 7.11372 7.50540 8.96970 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.002536 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.329708 B =11037.266659 C =11934.238465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.517 3.483 4 O -0.527 6.527 5 C -0.109 4.109 6 C -0.053 4.053 7 C 0.092 3.908 8 F -0.125 7.125 9 C -0.076 4.076 10 C -0.116 4.116 11 C 0.550 3.450 12 O -0.577 6.577 13 N -0.700 5.700 14 C 0.145 3.855 15 C 0.050 3.950 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.526 4.526 19 H 0.045 0.955 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.944 3.056 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.014 4.014 27 H 0.140 0.860 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.409 0.591 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.260 0.740 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.813 -17.772 0.004 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.362 3.638 4 O -0.417 6.417 5 C -0.110 4.110 6 C -0.072 4.072 7 C 0.072 3.928 8 F -0.104 7.104 9 C -0.095 4.095 10 C -0.119 4.119 11 C 0.338 3.662 12 O -0.458 6.458 13 N -0.351 5.351 14 C 0.022 3.978 15 C 0.049 3.951 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.564 4.564 19 H 0.063 0.937 20 C -0.172 4.172 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.033 4.033 27 H 0.158 0.842 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.202 0.798 31 H 0.181 0.819 32 H 0.248 0.752 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.247 -16.860 0.005 24.844 hybrid contribution 0.894 0.955 -0.001 1.308 sum -17.353 -15.906 0.004 23.539 Atomic orbital electron populations 1.23671 0.73697 1.06268 1.02836 1.86514 1.25605 1.30725 1.83608 1.20956 0.88638 0.81923 0.72268 1.90882 1.67091 1.37153 1.46620 1.18665 0.89645 0.93513 1.09204 1.21788 0.91546 1.00285 0.93557 1.17194 0.89165 0.81921 1.04470 1.91590 1.76906 1.47944 1.93929 1.21759 1.02391 0.90092 0.95306 1.19449 0.93477 0.92389 1.06588 1.18415 0.82557 0.88689 0.76558 1.90769 1.65949 1.37050 1.52067 1.46044 1.05517 1.10933 1.72587 1.21394 0.93724 0.83066 0.99603 1.18381 0.88094 0.94968 0.93619 1.21700 1.02782 0.96837 0.96788 1.21701 1.02786 0.96842 0.96789 1.21279 0.91723 0.92388 1.51041 0.93668 1.25431 0.97969 0.98973 0.94788 1.69900 1.05972 1.27064 1.50753 0.85728 0.78490 0.81250 0.77449 1.20061 1.20822 1.20829 1.21309 0.93136 0.97971 0.90900 0.84249 0.91741 0.91729 0.79772 0.81857 0.75196 0.93698 0.93703 0.94291 0.91797 0.96141 0.96144 0.91792 0.94278 0.93042 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.25 9.81 -56.20 -0.55 -5.80 16 3 C 0.52 10.74 7.90 70.34 0.56 11.29 16 4 O -0.53 -14.38 16.13 19.95 0.32 -14.06 16 5 C -0.11 -2.14 5.87 -20.14 -0.12 -2.26 16 6 C -0.05 -0.78 9.59 22.64 0.22 -0.56 16 7 C 0.09 1.51 7.28 22.30 0.16 1.67 16 8 F -0.13 -2.09 17.26 44.97 0.78 -1.31 16 9 C -0.08 -1.46 9.51 22.63 0.22 -1.24 16 10 C -0.12 -2.90 5.87 -20.13 -0.12 -3.02 16 11 C 0.55 18.27 7.77 86.79 0.67 18.95 16 12 O -0.58 -23.85 16.34 -3.87 -0.06 -23.91 16 13 N -0.70 -22.98 4.91 -465.94 -2.29 -25.26 16 14 C 0.15 5.96 4.50 86.38 0.39 6.34 16 15 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 16 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 17 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 18 C -0.53 -27.17 8.01 25.60 0.21 -26.97 16 19 H 0.05 2.40 7.74 -2.91 -0.02 2.38 16 20 C 0.03 1.46 5.15 84.65 0.44 1.90 16 21 N -0.90 -46.91 9.35 21.45 0.20 -46.71 16 22 Si 0.94 42.13 29.54 68.60 2.03 44.16 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C -0.01 -0.34 9.13 22.80 0.21 -0.13 16 27 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.18 1.66 7.60 -2.91 -0.02 1.64 16 31 H 0.16 2.64 6.39 -2.91 -0.02 2.62 16 32 H 0.41 11.29 4.19 -92.71 -0.39 10.90 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.04 1.35 6.86 -2.38 -0.02 1.33 16 36 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 40 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 41 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 42 H 0.14 4.00 7.23 -2.91 -0.02 3.98 16 Total: -1.00 -64.21 356.76 6.26 -57.94 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.68 Total: 14.65 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.16 Total: 0.31 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -2.09 Total: -71.97 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.29 Total: -43.77 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -64.21 6.26 -57.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.302 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds