Wall clock time and date at job start Tue Mar 31 2020 13:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 C 1.52995 * 109.46892 * 120.00083 * 2 1 3 5 5 C 1.50703 * 109.47248 * 64.99927 * 4 2 1 6 6 C 1.33820 * 124.52257 * 89.99954 * 5 4 2 7 7 C 1.37473 * 115.10079 * 180.02562 * 6 5 4 8 8 C 1.36651 * 113.29540 * 0.02562 * 7 6 5 9 9 C 1.46580 * 125.45483 * 180.02562 * 8 7 6 10 10 O 1.21703 * 120.00329 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99688 * 179.97438 * 9 8 7 12 12 C 1.47023 * 125.65028 * 359.95308 * 11 9 8 13 13 C 1.54428 * 107.28135 * 181.09744 * 12 11 9 14 14 C 1.55160 * 102.89386 * 22.18588 * 13 12 11 15 15 O 1.42905 * 111.00102 * 82.59578 * 14 13 12 16 16 C 1.50701 * 111.00410 * 206.40650 * 14 13 12 17 17 H 1.07994 * 120.00187 * 356.81970 * 16 14 13 18 18 C 1.37878 * 119.99769 * 176.82468 * 16 14 13 19 19 N 1.31509 * 120.00073 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99731 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47218 * 59.99675 * 20 18 16 22 22 H 1.48498 * 109.46766 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46824 * 299.99519 * 20 18 16 24 24 C 1.47433 * 125.64677 * 179.97438 * 11 9 8 25 25 S 1.70621 * 124.52339 * 270.35452 * 5 4 2 26 26 H 1.09000 * 109.47279 * 300.00042 * 1 2 3 27 27 H 1.09000 * 109.47115 * 59.99932 * 1 2 3 28 28 H 1.08996 * 109.47751 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46545 * 239.99892 * 2 1 3 30 30 H 1.08995 * 109.46920 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47146 * 300.00048 * 3 2 1 32 32 H 1.09000 * 109.47043 * 59.99814 * 3 2 1 33 33 H 1.09005 * 109.47332 * 304.99845 * 4 2 1 34 34 H 1.09003 * 109.47126 * 184.99937 * 4 2 1 35 35 H 1.08003 * 122.44839 * 0.05656 * 6 5 4 36 36 H 1.07997 * 123.34929 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.88347 * 300.51248 * 12 11 9 38 38 H 1.09002 * 109.87899 * 61.53090 * 12 11 9 39 39 H 1.08999 * 110.72281 * 263.84993 * 13 12 11 40 40 H 1.08996 * 110.76416 * 140.54540 * 13 12 11 41 41 H 0.96697 * 113.99904 * 183.18164 * 15 14 13 42 42 H 0.97000 * 120.00160 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36418 * 37.00051 * 24 11 9 44 44 H 1.08997 * 110.36595 * 274.67504 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 -2.1733 1.1889 6 6 2.3827 -3.1411 0.6371 7 6 1.8313 -4.3993 0.6887 8 6 0.6106 -4.4297 1.3021 9 6 -0.2108 -5.6271 1.5022 10 8 0.1832 -6.7085 1.1067 11 7 -1.4025 -5.5305 2.1244 12 6 -1.9965 -4.2929 2.6508 13 6 -3.3461 -4.6713 3.2989 14 6 -3.1732 -6.1833 3.6011 15 8 -2.4674 -6.3830 4.8275 16 6 -4.5068 -6.8847 3.6284 17 1 -5.4175 -6.3184 3.5006 18 6 -4.5643 -8.2493 3.8166 19 7 -3.4553 -8.9390 3.9718 20 14 -6.2173 -9.1188 3.8497 21 1 -6.9149 -8.9052 2.5563 22 1 -6.0074 -10.5731 4.0642 23 1 -7.0435 -8.5692 4.9544 24 6 -2.3261 -6.6485 2.3902 25 16 0.1804 -2.8015 1.8073 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 3.3442 -2.9478 0.1847 36 1 2.3145 -5.2763 0.2840 37 1 -1.3364 -3.8539 3.3989 38 1 -2.1586 -3.5847 1.8382 39 1 -4.1679 -4.5090 2.6014 40 1 -3.5037 -4.1095 4.2195 41 1 -2.2926 -7.3114 5.0341 42 1 -3.4957 -9.8991 4.1038 43 1 -1.7678 -7.5501 2.6419 44 1 -2.9655 -6.8261 1.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:46 Heat of formation + Delta-G solvation = -70.195781 kcal Electronic energy + Delta-G solvation = -25330.467851 eV Core-core repulsion = 21759.656460 eV Total energy + Delta-G solvation = -3570.811391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.48129 -38.36232 -37.15209 -35.94673 -34.31858 -32.21568 -30.90342 -30.10589 -28.12343 -27.43498 -26.90850 -25.03304 -23.65831 -22.59286 -20.73281 -20.35571 -19.65433 -18.07133 -17.63776 -17.13329 -15.96028 -15.60493 -15.25997 -15.17193 -14.90588 -14.61401 -14.46581 -13.94332 -13.65017 -13.33063 -13.11208 -12.95783 -12.71653 -12.52262 -12.31974 -12.21040 -12.09729 -11.90452 -11.71357 -11.53057 -11.21479 -11.10175 -11.09355 -10.98795 -10.92656 -10.71567 -10.52549 -10.41776 -10.21664 -9.55118 -9.39775 -8.71636 -8.59326 -8.47118 -8.36955 -7.81038 -6.30513 -4.40542 0.66925 1.60110 2.04407 2.52838 3.20769 3.27059 3.28336 3.56396 3.64528 4.24688 4.47222 4.59703 4.64724 4.91151 5.00215 5.05352 5.15558 5.30280 5.32506 5.39759 5.41804 5.51472 5.53840 5.61318 5.65134 5.70288 5.73438 5.86883 5.93835 5.99044 6.03180 6.06720 6.15145 6.31392 6.43218 6.47299 6.66319 6.79914 6.92295 7.21029 7.30562 7.71598 7.96877 8.12424 8.61399 8.66455 9.28310 9.38440 10.76781 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.003083 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.572086 B = 9080.510612 C = 9685.955937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.044 4.044 5 C -0.220 4.220 6 C -0.152 4.152 7 C -0.066 4.066 8 C -0.252 4.252 9 C 0.591 3.409 10 O -0.542 6.542 11 N -0.603 5.603 12 C 0.092 3.908 13 C -0.112 4.112 14 C 0.250 3.750 15 O -0.583 6.583 16 C -0.539 4.539 17 H 0.067 0.933 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.095 3.905 25 S 0.222 5.778 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.272 0.728 43 H 0.087 0.913 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.935 17.667 -5.954 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.083 4.083 5 C -0.339 4.339 6 C -0.182 4.182 7 C -0.099 4.099 8 C -0.373 4.373 9 C 0.379 3.621 10 O -0.422 6.422 11 N -0.335 5.335 12 C -0.033 4.033 13 C -0.150 4.150 14 C 0.209 3.791 15 O -0.392 6.392 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.026 4.026 25 S 0.492 5.508 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.999 18.188 -5.404 20.591 hybrid contribution 0.591 -1.779 -0.839 2.054 sum 8.590 16.409 -6.243 19.545 Atomic orbital electron populations 1.22000 0.94938 1.02589 1.01909 1.21123 0.96373 0.95837 0.97815 1.21839 1.00899 0.95688 1.01966 1.20254 1.01403 0.88055 0.98631 1.24536 1.02250 1.00606 1.06476 1.19854 1.02117 0.91592 1.04657 1.20666 0.93165 0.98441 0.97615 1.24789 1.01941 0.97483 1.13056 1.16607 0.79993 0.86894 0.78627 1.90798 1.71530 1.27865 1.52010 1.48620 1.17942 1.11467 1.55474 1.22136 0.96825 0.86803 0.97493 1.22617 0.93774 0.98549 1.00055 1.19607 0.89338 0.89126 0.81012 1.86084 1.78839 1.32803 1.41492 1.21421 0.92230 0.92664 1.51439 0.91452 1.25085 0.97322 0.97426 0.93380 1.69639 1.26841 1.08439 1.48260 0.86439 0.83250 0.78301 0.78786 1.20007 1.21070 1.19965 1.23350 0.90573 0.89010 0.99691 1.83470 1.15464 0.97636 1.54267 0.92486 0.92496 0.91985 0.90860 0.92667 0.92500 0.92557 0.90740 0.90202 0.84593 0.83344 0.91540 0.92130 0.90115 0.90365 0.76473 0.91818 0.89471 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.88 37.16 0.33 -0.98 16 2 C -0.09 -0.72 2.91 -90.62 -0.26 -0.99 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 4 C -0.04 -0.38 5.12 -27.88 -0.14 -0.52 16 5 C -0.22 -2.50 4.92 -35.86 -0.18 -2.67 16 6 C -0.15 -1.82 9.99 -41.41 -0.41 -2.24 16 7 C -0.07 -0.98 10.01 -40.43 -0.40 -1.38 16 8 C -0.25 -4.28 6.38 -36.79 -0.23 -4.51 16 9 C 0.59 12.56 7.82 -12.90 -0.10 12.46 16 10 O -0.54 -13.28 17.10 5.19 0.09 -13.19 16 11 N -0.60 -12.77 3.33 -172.01 -0.57 -13.34 16 12 C 0.09 1.63 5.18 -3.01 -0.02 1.62 16 13 C -0.11 -2.17 6.13 -24.84 -0.15 -2.32 16 14 C 0.25 5.97 0.88 -89.61 -0.08 5.89 16 15 O -0.58 -14.76 13.17 -35.23 -0.46 -15.23 16 16 C -0.54 -13.78 8.26 -34.44 -0.28 -14.06 16 17 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 19 N -0.89 -23.66 10.69 55.43 0.59 -23.06 16 20 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.09 2.28 5.51 -2.52 -0.01 2.27 16 25 S 0.22 2.91 16.77 -107.50 -1.80 1.11 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.61 6.10 -51.93 -0.32 0.29 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.07 1.13 6.84 -51.93 -0.36 0.77 16 38 H 0.06 0.92 6.96 -51.93 -0.36 0.56 16 39 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.38 10.07 7.25 45.56 0.33 10.40 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.09 2.36 7.47 -51.93 -0.39 1.97 16 44 H 0.06 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -29.21 364.55 -9.51 -38.72 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.12 Total: 10.68 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.70 Total: -6.29 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.02 Total: -36.40 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.38 Total: -28.42 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.80 Total: 1.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.21 -9.51 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.474 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds