Wall clock time and date at job start Tue Mar 31 2020 13:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 C 1.52995 * 109.46892 * 120.00083 * 2 1 3 5 5 C 1.50703 * 109.47248 * 64.99927 * 4 2 1 6 6 C 1.33820 * 124.52257 * 89.99954 * 5 4 2 7 7 C 1.37473 * 115.10079 * 180.02562 * 6 5 4 8 8 C 1.36651 * 113.29540 * 0.02562 * 7 6 5 9 9 C 1.46580 * 125.45483 * 180.02562 * 8 7 6 10 10 O 1.21703 * 120.00329 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99688 * 179.97438 * 9 8 7 12 12 C 1.47023 * 125.65028 * 359.95308 * 11 9 8 13 13 C 1.54428 * 107.28135 * 181.09744 * 12 11 9 14 14 C 1.55160 * 102.89386 * 22.18588 * 13 12 11 15 15 O 1.42905 * 111.00102 * 82.59578 * 14 13 12 16 16 C 1.50701 * 111.00410 * 206.40650 * 14 13 12 17 17 H 1.07994 * 120.00187 * 356.81970 * 16 14 13 18 18 C 1.37878 * 119.99769 * 176.82468 * 16 14 13 19 19 N 1.31509 * 120.00073 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99731 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47218 * 59.99675 * 20 18 16 22 22 H 1.48498 * 109.46766 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46824 * 299.99519 * 20 18 16 24 24 C 1.47433 * 125.64677 * 179.97438 * 11 9 8 25 25 S 1.70621 * 124.52339 * 270.35452 * 5 4 2 26 26 H 1.09000 * 109.47279 * 300.00042 * 1 2 3 27 27 H 1.09000 * 109.47115 * 59.99932 * 1 2 3 28 28 H 1.08996 * 109.47751 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46545 * 239.99892 * 2 1 3 30 30 H 1.08995 * 109.46920 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47146 * 300.00048 * 3 2 1 32 32 H 1.09000 * 109.47043 * 59.99814 * 3 2 1 33 33 H 1.09005 * 109.47332 * 304.99845 * 4 2 1 34 34 H 1.09003 * 109.47126 * 184.99937 * 4 2 1 35 35 H 1.08003 * 122.44839 * 0.05656 * 6 5 4 36 36 H 1.07997 * 123.34929 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.88347 * 300.51248 * 12 11 9 38 38 H 1.09002 * 109.87899 * 61.53090 * 12 11 9 39 39 H 1.08999 * 110.72281 * 263.84993 * 13 12 11 40 40 H 1.08996 * 110.76416 * 140.54540 * 13 12 11 41 41 H 0.96697 * 113.99904 * 183.18164 * 15 14 13 42 42 H 0.97000 * 120.00160 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36418 * 37.00051 * 24 11 9 44 44 H 1.08997 * 110.36595 * 274.67504 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 -2.1733 1.1889 6 6 2.3827 -3.1411 0.6371 7 6 1.8313 -4.3993 0.6887 8 6 0.6106 -4.4297 1.3021 9 6 -0.2108 -5.6271 1.5022 10 8 0.1832 -6.7085 1.1067 11 7 -1.4025 -5.5305 2.1244 12 6 -1.9965 -4.2929 2.6508 13 6 -3.3461 -4.6713 3.2989 14 6 -3.1732 -6.1833 3.6011 15 8 -2.4674 -6.3830 4.8275 16 6 -4.5068 -6.8847 3.6284 17 1 -5.4175 -6.3184 3.5006 18 6 -4.5643 -8.2493 3.8166 19 7 -3.4553 -8.9390 3.9718 20 14 -6.2173 -9.1188 3.8497 21 1 -6.9149 -8.9052 2.5563 22 1 -6.0074 -10.5731 4.0642 23 1 -7.0435 -8.5692 4.9544 24 6 -2.3261 -6.6485 2.3902 25 16 0.1804 -2.8015 1.8073 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 3.3442 -2.9478 0.1847 36 1 2.3145 -5.2763 0.2840 37 1 -1.3364 -3.8539 3.3989 38 1 -2.1586 -3.5847 1.8382 39 1 -4.1679 -4.5090 2.6014 40 1 -3.5037 -4.1095 4.2195 41 1 -2.2926 -7.3114 5.0341 42 1 -3.4957 -9.8991 4.1038 43 1 -1.7678 -7.5501 2.6419 44 1 -2.9655 -6.8261 1.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:46 Heat of formation + Delta-G solvation = -88.146342 kcal Electronic energy + Delta-G solvation = -25331.246246 eV Core-core repulsion = 21759.656460 eV Total energy + Delta-G solvation = -3571.589786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11589 -39.50323 -38.67876 -36.80755 -36.15229 -34.21185 -32.25266 -31.45438 -29.77542 -28.23244 -27.98502 -26.66728 -24.85253 -24.00047 -21.97408 -21.45689 -21.15487 -19.28413 -19.24075 -18.85508 -17.25924 -17.04550 -16.85549 -16.78106 -16.18891 -15.90159 -15.38693 -15.09746 -14.90626 -14.82684 -14.74866 -14.45264 -13.77377 -13.63591 -13.57013 -13.39122 -13.31655 -13.12224 -12.88780 -12.83057 -12.69211 -12.62882 -12.37505 -12.30215 -12.17729 -11.89643 -11.77494 -11.62487 -11.49604 -11.20168 -11.16589 -10.66430 -10.36888 -9.84062 -9.51207 -9.35135 -8.26324 -6.43759 -0.48840 0.49325 0.98660 1.38785 1.44058 1.44255 1.52710 1.97353 2.15353 2.38339 2.99566 3.53101 3.69666 3.71945 4.00289 4.04736 4.05216 4.11775 4.24635 4.28681 4.41109 4.44910 4.49593 4.67343 4.73836 4.78865 4.86307 4.97238 4.98015 5.00372 5.03598 5.06778 5.11549 5.19721 5.24524 5.31540 5.35664 5.41201 5.42810 5.48632 5.54577 5.73648 6.02419 6.49334 6.65058 7.01177 7.26696 7.34061 8.79210 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.003083 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.572086 B = 9080.510612 C = 9685.955937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.046 4.046 5 C -0.193 4.193 6 C -0.160 4.160 7 C -0.055 4.055 8 C -0.306 4.306 9 C 0.584 3.416 10 O -0.594 6.594 11 N -0.610 5.610 12 C 0.095 3.905 13 C -0.106 4.106 14 C 0.234 3.766 15 O -0.588 6.588 16 C -0.556 4.556 17 H 0.074 0.926 18 C 0.025 3.975 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.268 1.268 24 C 0.107 3.893 25 S 0.253 5.747 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.375 0.625 42 H 0.270 0.730 43 H 0.045 0.955 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.232 21.264 -6.206 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.313 4.313 6 C -0.189 4.189 7 C -0.090 4.090 8 C -0.425 4.425 9 C 0.375 3.625 10 O -0.478 6.478 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.144 4.144 14 C 0.194 3.806 15 O -0.396 6.396 16 C -0.594 4.594 17 H 0.092 0.908 18 C -0.176 4.176 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.195 1.195 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.016 4.016 25 S 0.523 5.477 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.225 0.775 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.277 21.836 -5.644 24.024 hybrid contribution 0.587 -2.787 -0.798 2.957 sum 8.864 19.049 -6.443 21.976 Atomic orbital electron populations 1.22045 0.95490 1.01690 1.02637 1.21104 0.95886 0.96781 0.97112 1.21809 1.01437 0.94416 1.02409 1.20457 1.02827 0.85726 0.99525 1.24982 1.00635 1.02069 1.03614 1.20029 1.03442 0.90198 1.05260 1.20881 0.92373 0.99675 0.96066 1.24444 1.02851 0.98070 1.17172 1.17257 0.79939 0.87833 0.77478 1.90742 1.72641 1.30271 1.54106 1.48651 1.17932 1.11708 1.55759 1.22290 0.95951 0.85869 0.98729 1.22641 0.95270 0.95204 1.01288 1.19851 0.88485 0.92210 0.80070 1.86072 1.79139 1.32056 1.42370 1.21775 0.93148 0.93180 1.51267 0.90834 1.25865 1.00366 0.98250 0.93133 1.69772 1.28601 1.08393 1.48961 0.85473 0.79459 0.76940 0.78964 1.19463 1.21296 1.19238 1.22935 0.90488 0.88794 0.99383 1.83160 1.16312 0.94519 1.53686 0.91771 0.91934 0.93582 0.91279 0.91825 0.92196 0.92054 0.89596 0.88187 0.81630 0.84057 0.90349 0.88976 0.88582 0.88863 0.77497 0.92081 0.93627 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.88 71.98 0.64 -1.56 16 2 C -0.09 -1.07 2.91 -10.79 -0.03 -1.10 16 3 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 4 C -0.05 -0.59 5.12 29.85 0.15 -0.44 16 5 C -0.19 -3.77 4.92 24.68 0.12 -3.64 16 6 C -0.16 -3.43 9.99 21.08 0.21 -3.22 16 7 C -0.06 -1.62 10.01 21.72 0.22 -1.40 16 8 C -0.31 -10.36 6.38 24.08 0.15 -10.20 16 9 C 0.58 25.86 7.82 86.42 0.68 26.54 16 10 O -0.59 -31.08 17.10 -4.36 -0.07 -31.16 16 11 N -0.61 -26.52 3.33 -816.34 -2.72 -29.24 16 12 C 0.09 3.26 5.18 86.76 0.45 3.71 16 13 C -0.11 -4.00 6.13 31.82 0.20 -3.80 16 14 C 0.23 11.39 0.88 -10.14 -0.01 11.38 16 15 O -0.59 -30.58 13.17 -148.98 -1.96 -32.54 16 16 C -0.56 -28.68 8.26 25.60 0.21 -28.47 16 17 H 0.07 3.61 7.78 -2.91 -0.02 3.59 16 18 C 0.02 1.29 5.29 84.66 0.45 1.74 16 19 N -0.92 -50.55 10.69 21.45 0.23 -50.32 16 20 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.11 5.40 5.51 86.86 0.48 5.87 16 25 S 0.25 6.08 16.77 -56.49 -0.95 5.13 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.77 6.10 -2.39 -0.01 0.76 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.08 2.52 6.84 -2.39 -0.02 2.50 16 38 H 0.09 2.59 6.96 -2.39 -0.02 2.57 16 39 H 0.10 3.29 8.03 -2.39 -0.02 3.27 16 40 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.38 20.63 7.25 -74.06 -0.54 20.10 16 42 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.05 2.65 7.47 -2.39 -0.02 2.63 16 44 H 0.05 2.52 8.03 -2.39 -0.02 2.51 16 Total: -1.00 -66.80 364.55 1.59 -65.21 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.46 Total: 34.40 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.57 Total: -5.19 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.49 Total: -79.56 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -2.04 Total: -63.70 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -0.95 Total: 5.13 kcal Total: -66.80 1.59 -65.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.938 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds