Wall clock time and date at job start Tue Mar 31 2020 13:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47255 * 2 1 4 4 C 1.53004 * 109.47231 * 120.00420 * 2 1 3 5 5 C 1.50698 * 109.47131 * 174.99757 * 4 2 1 6 6 C 1.33817 * 124.52130 * 89.99802 * 5 4 2 7 7 C 1.37475 * 115.09930 * 179.77207 * 6 5 4 8 8 C 1.36648 * 113.29502 * 0.44902 * 7 6 5 9 9 C 1.46587 * 125.45680 * 179.83626 * 8 7 6 10 10 O 1.21705 * 120.00036 * 5.47391 * 9 8 7 11 11 N 1.34773 * 120.00022 * 185.46618 * 9 8 7 12 12 C 1.47470 * 125.62975 * 175.22432 * 11 9 8 13 13 C 1.54907 * 104.81255 * 204.04924 * 12 11 9 14 14 C 1.55162 * 101.61471 * 323.04374 * 13 12 11 15 15 O 1.42897 * 110.71942 * 277.11288 * 14 13 12 16 16 C 1.50703 * 110.71617 * 154.02405 * 14 13 12 17 17 H 1.07994 * 120.00609 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99849 * 179.97438 * 16 14 13 19 19 N 1.31522 * 119.99858 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00109 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47124 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47013 * 119.99923 * 20 18 16 23 23 H 1.48500 * 109.47400 * 240.00017 * 20 18 16 24 24 C 1.47022 * 125.64723 * 355.20110 * 11 9 8 25 25 S 1.70616 * 124.52217 * 270.02259 * 5 4 2 26 26 H 1.09001 * 109.46824 * 299.99941 * 1 2 3 27 27 H 1.08997 * 109.47685 * 59.99521 * 1 2 3 28 28 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46824 * 240.00059 * 2 1 3 30 30 H 1.09003 * 109.47325 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47373 * 300.00120 * 3 2 1 32 32 H 1.09001 * 109.47156 * 60.00263 * 3 2 1 33 33 H 1.08998 * 109.47425 * 54.99632 * 4 2 1 34 34 H 1.09007 * 109.46516 * 294.99178 * 4 2 1 35 35 H 1.07995 * 122.45177 * 0.04036 * 6 5 4 36 36 H 1.08000 * 123.35543 * 180.26873 * 7 6 5 37 37 H 1.08999 * 110.34538 * 85.23392 * 12 11 9 38 38 H 1.08996 * 110.40580 * 322.89734 * 12 11 9 39 39 H 1.08999 * 111.00682 * 204.95113 * 13 12 11 40 40 H 1.08998 * 111.00495 * 81.13535 * 13 12 11 41 41 H 0.96703 * 114.00225 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99577 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88467 * 59.58190 * 24 11 9 44 44 H 1.09000 * 110.01229 * 298.48483 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.8295 1.1888 6 6 4.3883 0.0832 1.6798 7 6 5.7214 -0.2139 1.5234 8 6 5.9389 -1.3984 0.8778 9 6 7.2531 -1.9692 0.5680 10 8 8.2634 -1.4287 0.9783 11 7 7.3426 -3.0927 -0.1711 12 6 8.5946 -3.7159 -0.6387 13 6 8.1860 -4.5378 -1.8866 14 6 6.7894 -5.0685 -1.4675 15 8 6.9154 -6.2415 -0.6613 16 6 5.9388 -5.3462 -2.6801 17 1 6.3341 -5.1685 -3.6693 18 6 4.6558 -5.8271 -2.5267 19 7 4.1745 -6.0439 -1.3221 20 14 3.6011 -6.1706 -4.0297 21 1 4.3698 -5.8471 -5.2583 22 1 3.2192 -7.6056 -4.0489 23 1 2.3760 -5.3331 -3.9767 24 6 6.2083 -3.8997 -0.6442 25 16 4.3900 -2.1318 0.4847 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1583 2.1370 35 1 4.0490 0.9851 2.1674 36 1 6.5176 0.4266 1.8732 37 1 9.0018 -4.3718 0.1308 38 1 9.3219 -2.9507 -0.9099 39 1 8.8810 -5.3598 -2.0578 40 1 8.1134 -3.9003 -2.7677 41 1 6.0705 -6.6129 -0.3725 42 1 3.2716 -6.3819 -1.2141 43 1 5.5571 -3.2917 -1.2721 44 1 5.6468 -4.2880 0.2055 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:49 Heat of formation + Delta-G solvation = -72.233981 kcal Electronic energy + Delta-G solvation = -25799.155251 eV Core-core repulsion = 22228.255477 eV Total energy + Delta-G solvation = -3570.899774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49244 -38.27881 -37.18989 -35.71406 -34.26634 -32.27957 -31.02768 -29.94165 -28.05081 -27.30570 -26.64375 -25.19210 -23.63795 -22.45309 -20.51357 -20.19765 -19.64144 -18.14489 -17.56484 -17.08069 -15.89580 -15.54355 -15.32198 -14.97356 -14.85085 -14.42234 -14.41336 -14.05725 -13.33768 -13.09068 -13.04235 -12.99712 -12.69792 -12.36653 -12.33980 -12.10384 -12.00467 -11.72501 -11.64685 -11.58322 -11.14500 -11.02274 -10.91374 -10.89381 -10.77802 -10.63099 -10.58426 -10.32789 -10.19142 -9.62669 -9.40238 -8.77471 -8.45701 -8.40574 -8.24968 -7.88298 -6.40990 -4.49176 0.85156 1.86837 2.32011 2.66320 3.11606 3.21674 3.25445 3.55332 3.65635 4.17494 4.67133 4.78786 4.85303 4.85925 5.07137 5.18993 5.42456 5.52069 5.53475 5.56938 5.57806 5.68614 5.70998 5.73619 5.79466 5.80439 5.91016 5.94064 6.05326 6.16821 6.18390 6.23717 6.27442 6.36646 6.43909 6.57891 6.64303 6.70216 6.86869 6.99816 7.21258 7.62665 7.86102 8.11466 8.53170 8.62111 9.20302 9.34022 10.66578 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005521 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.497469 B = 5070.191586 C = 7256.018358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.044 4.044 5 C -0.227 4.227 6 C -0.157 4.157 7 C -0.067 4.067 8 C -0.268 4.268 9 C 0.596 3.404 10 O -0.556 6.556 11 N -0.608 5.608 12 C 0.112 3.888 13 C -0.119 4.119 14 C 0.255 3.745 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.901 3.099 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.078 3.922 25 S 0.272 5.728 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.271 0.729 43 H 0.075 0.925 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 9.572 3.428 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.083 4.083 5 C -0.347 4.347 6 C -0.188 4.188 7 C -0.101 4.101 8 C -0.388 4.388 9 C 0.385 3.615 10 O -0.437 6.437 11 N -0.340 5.340 12 C -0.010 4.010 13 C -0.157 4.157 14 C 0.214 3.786 15 O -0.393 6.393 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.046 4.046 25 S 0.543 5.457 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.489 8.599 2.955 10.621 hybrid contribution -1.005 1.130 0.169 1.522 sum -6.494 9.729 3.124 12.107 Atomic orbital electron populations 1.21837 0.94943 1.01901 1.01699 1.21138 0.95519 0.96715 0.97953 1.21891 1.01917 0.95496 1.01275 1.20225 0.87917 1.01406 0.98755 1.24762 1.01115 1.02458 1.06371 1.19778 0.91851 1.01318 1.05819 1.20575 0.96884 0.95193 0.97430 1.24658 0.97549 1.02938 1.13693 1.16639 0.87057 0.79622 0.78223 1.90750 1.36531 1.62143 1.54320 1.48620 1.10283 1.24147 1.50946 1.22223 0.86197 0.95881 0.96690 1.22805 0.98426 0.98677 0.95828 1.19390 0.90107 0.81360 0.87730 1.86116 1.37099 1.44245 1.71843 1.21596 0.98195 1.44741 0.92910 0.91268 1.25043 0.97551 0.93878 0.96565 1.69573 1.17737 1.45130 1.21134 0.86382 0.79983 0.78195 0.82633 1.19527 1.20645 1.20665 1.23302 0.87607 0.94482 0.99196 1.84486 0.93307 1.17059 1.50851 0.92737 0.92565 0.92509 0.90772 0.91950 0.92940 0.92908 0.90705 0.90402 0.84912 0.83737 0.91604 0.91474 0.90198 0.90440 0.76188 0.91869 0.90713 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -1.01 2.91 -90.62 -0.26 -1.27 16 3 C -0.15 -1.49 8.87 37.16 0.33 -1.16 16 4 C -0.04 -0.50 5.12 -27.88 -0.14 -0.64 16 5 C -0.23 -3.17 5.05 -35.86 -0.18 -3.35 16 6 C -0.16 -2.14 8.50 -41.41 -0.35 -2.49 16 7 C -0.07 -1.07 10.02 -40.43 -0.40 -1.47 16 8 C -0.27 -4.93 6.38 -36.79 -0.23 -5.16 16 9 C 0.60 12.55 7.80 -12.90 -0.10 12.45 16 10 O -0.56 -12.73 17.14 5.18 0.09 -12.64 16 11 N -0.61 -12.78 3.33 -172.06 -0.57 -13.35 16 12 C 0.11 2.20 6.88 -2.51 -0.02 2.18 16 13 C -0.12 -2.39 6.22 -24.58 -0.15 -2.54 16 14 C 0.26 5.87 0.86 -89.93 -0.08 5.79 16 15 O -0.58 -14.15 13.09 -35.23 -0.46 -14.61 16 16 C -0.54 -13.13 8.11 -34.44 -0.28 -13.41 16 17 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 18 C 0.07 1.74 5.28 -17.82 -0.09 1.65 16 19 N -0.90 -21.52 10.98 55.43 0.61 -20.91 16 20 Si 0.90 19.11 29.54 -169.99 -5.02 14.09 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 C 0.08 1.70 3.85 -3.06 -0.01 1.68 16 25 S 0.27 4.59 18.42 -107.50 -1.98 2.61 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.70 6.38 -51.93 -0.33 0.37 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 41 H 0.39 9.49 6.98 45.56 0.32 9.81 16 42 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 43 H 0.07 1.67 6.37 -51.92 -0.33 1.34 16 44 H 0.07 1.67 7.07 -51.93 -0.37 1.30 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -26.70 365.38 -9.64 -36.34 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.16 Total: 11.68 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.64 Total: -8.72 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.04 Total: -34.26 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.37 Total: -27.25 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.98 Total: 2.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.70 -9.64 -36.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.898 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds