Wall clock time and date at job start Tue Mar 31 2020 13:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47255 * 2 1 4 4 C 1.53004 * 109.47231 * 120.00420 * 2 1 3 5 5 C 1.50698 * 109.47131 * 174.99757 * 4 2 1 6 6 C 1.33817 * 124.52130 * 89.99802 * 5 4 2 7 7 C 1.37475 * 115.09930 * 179.77207 * 6 5 4 8 8 C 1.36648 * 113.29502 * 0.44902 * 7 6 5 9 9 C 1.46587 * 125.45680 * 179.83626 * 8 7 6 10 10 O 1.21705 * 120.00036 * 5.47391 * 9 8 7 11 11 N 1.34773 * 120.00022 * 185.46618 * 9 8 7 12 12 C 1.47470 * 125.62975 * 175.22432 * 11 9 8 13 13 C 1.54907 * 104.81255 * 204.04924 * 12 11 9 14 14 C 1.55162 * 101.61471 * 323.04374 * 13 12 11 15 15 O 1.42897 * 110.71942 * 277.11288 * 14 13 12 16 16 C 1.50703 * 110.71617 * 154.02405 * 14 13 12 17 17 H 1.07994 * 120.00609 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99849 * 179.97438 * 16 14 13 19 19 N 1.31522 * 119.99858 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00109 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47124 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47013 * 119.99923 * 20 18 16 23 23 H 1.48500 * 109.47400 * 240.00017 * 20 18 16 24 24 C 1.47022 * 125.64723 * 355.20110 * 11 9 8 25 25 S 1.70616 * 124.52217 * 270.02259 * 5 4 2 26 26 H 1.09001 * 109.46824 * 299.99941 * 1 2 3 27 27 H 1.08997 * 109.47685 * 59.99521 * 1 2 3 28 28 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46824 * 240.00059 * 2 1 3 30 30 H 1.09003 * 109.47325 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47373 * 300.00120 * 3 2 1 32 32 H 1.09001 * 109.47156 * 60.00263 * 3 2 1 33 33 H 1.08998 * 109.47425 * 54.99632 * 4 2 1 34 34 H 1.09007 * 109.46516 * 294.99178 * 4 2 1 35 35 H 1.07995 * 122.45177 * 0.04036 * 6 5 4 36 36 H 1.08000 * 123.35543 * 180.26873 * 7 6 5 37 37 H 1.08999 * 110.34538 * 85.23392 * 12 11 9 38 38 H 1.08996 * 110.40580 * 322.89734 * 12 11 9 39 39 H 1.08999 * 111.00682 * 204.95113 * 13 12 11 40 40 H 1.08998 * 111.00495 * 81.13535 * 13 12 11 41 41 H 0.96703 * 114.00225 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99577 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88467 * 59.58190 * 24 11 9 44 44 H 1.09000 * 110.01229 * 298.48483 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.8295 1.1888 6 6 4.3883 0.0832 1.6798 7 6 5.7214 -0.2139 1.5234 8 6 5.9389 -1.3984 0.8778 9 6 7.2531 -1.9692 0.5680 10 8 8.2634 -1.4287 0.9783 11 7 7.3426 -3.0927 -0.1711 12 6 8.5946 -3.7159 -0.6387 13 6 8.1860 -4.5378 -1.8866 14 6 6.7894 -5.0685 -1.4675 15 8 6.9154 -6.2415 -0.6613 16 6 5.9388 -5.3462 -2.6801 17 1 6.3341 -5.1685 -3.6693 18 6 4.6558 -5.8271 -2.5267 19 7 4.1745 -6.0439 -1.3221 20 14 3.6011 -6.1706 -4.0297 21 1 4.3698 -5.8471 -5.2583 22 1 3.2192 -7.6056 -4.0489 23 1 2.3760 -5.3331 -3.9767 24 6 6.2083 -3.8997 -0.6442 25 16 4.3900 -2.1318 0.4847 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1583 2.1370 35 1 4.0490 0.9851 2.1674 36 1 6.5176 0.4266 1.8732 37 1 9.0018 -4.3718 0.1308 38 1 9.3219 -2.9507 -0.9099 39 1 8.8810 -5.3598 -2.0578 40 1 8.1134 -3.9003 -2.7677 41 1 6.0705 -6.6129 -0.3725 42 1 3.2716 -6.3819 -1.2141 43 1 5.5571 -3.2917 -1.2721 44 1 5.6468 -4.2880 0.2055 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:49 Heat of formation + Delta-G solvation = -86.853328 kcal Electronic energy + Delta-G solvation = -25799.789194 eV Core-core repulsion = 22228.255477 eV Total energy + Delta-G solvation = -3571.533717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12219 -39.54964 -38.73641 -36.74468 -36.04594 -34.15482 -32.49711 -31.26618 -29.74780 -28.16367 -27.78148 -26.94985 -24.94197 -23.88878 -21.97388 -21.38743 -21.03777 -19.48408 -19.26774 -18.73273 -17.49807 -16.96300 -16.80920 -16.70286 -16.04536 -15.76729 -15.48232 -15.30514 -14.87098 -14.80354 -14.72556 -14.19251 -13.82712 -13.66337 -13.49923 -13.46539 -13.37103 -13.12263 -12.99236 -12.81966 -12.57553 -12.48994 -12.32694 -12.26470 -12.12810 -11.95665 -11.74035 -11.66350 -11.49499 -11.28311 -11.09158 -10.61116 -10.25141 -9.90176 -9.52507 -9.39591 -8.24420 -6.39086 -0.44961 0.56452 1.07828 1.39826 1.42589 1.48262 1.56824 1.97986 2.14376 2.40693 3.00959 3.52061 3.71015 3.87566 3.95203 4.00547 4.04241 4.14570 4.23927 4.27887 4.42295 4.52772 4.54305 4.68191 4.69402 4.72645 4.84325 4.87630 4.92699 5.01130 5.04801 5.05570 5.10144 5.17809 5.27032 5.27381 5.29651 5.43792 5.44994 5.46183 5.51678 5.76720 6.02765 6.45710 6.65718 6.97985 7.31810 7.41952 8.82187 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005521 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.497469 B = 5070.191586 C = 7256.018358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.045 4.045 5 C -0.201 4.201 6 C -0.154 4.154 7 C -0.050 4.050 8 C -0.306 4.306 9 C 0.592 3.408 10 O -0.582 6.582 11 N -0.614 5.614 12 C 0.112 3.888 13 C -0.112 4.112 14 C 0.239 3.761 15 O -0.591 6.591 16 C -0.558 4.558 17 H 0.064 0.936 18 C 0.040 3.960 19 N -0.906 5.906 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.277 1.277 24 C 0.100 3.900 25 S 0.227 5.773 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.381 0.619 42 H 0.274 0.726 43 H 0.066 0.934 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 11.197 3.781 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.084 4.084 5 C -0.321 4.321 6 C -0.183 4.183 7 C -0.085 4.085 8 C -0.426 4.426 9 C 0.382 3.618 10 O -0.466 6.466 11 N -0.346 5.346 12 C -0.010 4.010 13 C -0.150 4.150 14 C 0.198 3.802 15 O -0.400 6.400 16 C -0.596 4.596 17 H 0.082 0.918 18 C -0.162 4.162 19 N -0.545 5.545 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.202 1.202 24 C -0.024 4.024 25 S 0.497 5.503 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.186 0.814 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.232 0.768 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.164 10.216 3.303 12.907 hybrid contribution -0.549 0.686 0.109 0.886 sum -7.713 10.902 3.412 13.784 Atomic orbital electron populations 1.21808 0.93416 1.02069 1.02747 1.21127 0.96776 0.96896 0.96524 1.21879 1.00988 0.95051 1.02475 1.20392 0.85737 1.02051 1.00243 1.25038 1.02460 1.00471 1.04096 1.20043 0.90549 1.02286 1.05457 1.20896 0.98335 0.93957 0.95311 1.24495 0.96700 1.04549 1.16847 1.17032 0.87911 0.79251 0.77557 1.90712 1.37676 1.62805 1.55433 1.48696 1.10370 1.24348 1.51157 1.22266 0.86149 0.96144 0.96401 1.22783 0.97029 0.99001 0.96218 1.19623 0.91778 0.81266 0.87521 1.86107 1.36830 1.44988 1.72119 1.21769 0.98990 1.45745 0.93143 0.91768 1.25607 0.98295 0.93636 0.98672 1.69632 1.17971 1.44804 1.22126 0.85566 0.78625 0.77860 0.79988 1.19647 1.20600 1.20206 1.22926 0.87459 0.93878 0.98176 1.84595 0.93833 1.19301 1.52533 0.91152 0.92080 0.92828 0.93005 0.93310 0.92463 0.91095 0.90808 0.87736 0.81358 0.82865 0.91830 0.90132 0.89250 0.89687 0.76767 0.91608 0.91578 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.53 16 2 C -0.09 -1.79 2.91 -10.79 -0.03 -1.83 16 3 C -0.15 -2.50 8.87 71.98 0.64 -1.87 16 4 C -0.05 -0.91 5.12 29.85 0.15 -0.75 16 5 C -0.20 -5.22 5.05 24.68 0.12 -5.10 16 6 C -0.15 -3.78 8.50 21.08 0.18 -3.60 16 7 C -0.05 -1.53 10.02 21.72 0.22 -1.31 16 8 C -0.31 -11.31 6.38 24.08 0.15 -11.15 16 9 C 0.59 25.36 7.80 86.42 0.67 26.03 16 10 O -0.58 -26.98 17.14 -4.36 -0.07 -27.05 16 11 N -0.61 -26.33 3.33 -816.48 -2.72 -29.05 16 12 C 0.11 4.44 6.88 86.85 0.60 5.03 16 13 C -0.11 -4.52 6.22 31.99 0.20 -4.32 16 14 C 0.24 11.16 0.86 -10.35 -0.01 11.15 16 15 O -0.59 -29.25 13.09 -148.98 -1.95 -31.20 16 16 C -0.56 -27.63 8.11 25.60 0.21 -27.42 16 17 H 0.06 3.16 7.76 -2.91 -0.02 3.14 16 18 C 0.04 1.91 5.28 84.65 0.45 2.36 16 19 N -0.91 -43.89 10.98 21.45 0.24 -43.65 16 20 Si 0.95 39.02 29.54 68.60 2.03 41.05 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 24 C 0.10 4.45 3.85 86.73 0.33 4.78 16 25 S 0.23 7.72 18.42 -56.49 -1.04 6.68 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 0.96 6.38 -2.39 -0.02 0.95 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.15 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 39 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.08 3.25 8.03 -2.39 -0.02 3.23 16 41 H 0.38 19.24 6.98 -74.05 -0.52 18.72 16 42 H 0.27 12.61 8.31 -92.70 -0.77 11.84 16 43 H 0.07 3.05 6.37 -2.39 -0.02 3.04 16 44 H 0.06 2.80 7.07 -2.39 -0.02 2.78 16 Total: -1.00 -57.21 365.38 1.51 -55.69 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: 0.48 Total: 37.05 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.55 Total: -9.53 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -2.48 Total: -72.70 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -2.02 Total: -58.25 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.04 Total: 6.68 kcal Total: -57.21 1.51 -55.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.159 kcal (2) G-P(sol) polarization free energy of solvation -57.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds