Wall clock time and date at job start Tue Mar 31 2020 14:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76206 * 102.99667 * 2 1 4 4 C 1.39170 * 119.93396 * 359.97438 * 3 2 1 5 5 C 1.37986 * 120.31167 * 180.02562 * 4 3 2 6 6 C 1.38690 * 120.17896 * 359.97438 * 5 4 3 7 7 O 1.35746 * 120.07057 * 179.97438 * 6 5 4 8 8 C 1.40090 * 119.85656 * 359.97438 * 6 5 4 9 9 C 1.47550 * 120.15061 * 180.02562 * 8 6 5 10 10 O 1.21587 * 120.00337 * 32.84894 * 9 8 6 11 11 N 1.34785 * 119.99969 * 212.85253 * 9 8 6 12 12 C 1.46505 * 119.99506 * 1.77520 * 11 9 8 13 13 C 1.50700 * 109.47180 * 250.52939 * 12 11 9 14 14 H 1.08000 * 119.99848 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00433 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99470 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47212 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47112 * 120.00156 * 17 15 13 20 20 H 1.48506 * 109.47214 * 240.00156 * 17 15 13 21 21 C 1.46496 * 120.00021 * 181.77629 * 11 9 8 22 22 C 1.53000 * 109.46967 * 276.18653 * 21 11 9 23 23 C 1.53004 * 109.46759 * 175.00066 * 22 21 11 24 24 C 1.52990 * 109.47532 * 295.00294 * 22 21 11 25 25 C 1.38469 * 119.93150 * 180.27864 * 3 2 1 26 26 H 1.08999 * 109.47359 * 60.00341 * 1 2 3 27 27 H 1.09004 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47575 * 300.00037 * 1 2 3 29 29 H 1.07998 * 119.84291 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.90907 * 179.97438 * 5 4 3 31 31 H 0.96700 * 113.99714 * 270.01834 * 7 6 5 32 32 H 1.08995 * 109.47234 * 10.53195 * 12 11 9 33 33 H 1.08999 * 109.46560 * 130.53191 * 12 11 9 34 34 H 0.96999 * 119.99686 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.47066 * 36.19192 * 21 11 9 36 36 H 1.09000 * 109.46994 * 156.19366 * 21 11 9 37 37 H 1.08997 * 109.46894 * 55.00737 * 22 21 11 38 38 H 1.08997 * 109.46870 * 60.00656 * 23 22 21 39 39 H 1.09006 * 109.46781 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.46836 * 300.00207 * 23 22 21 41 41 H 1.09000 * 109.47182 * 59.99991 * 24 22 21 42 42 H 1.09000 * 109.47617 * 179.97438 * 24 22 21 43 43 H 1.09003 * 109.47006 * 299.99992 * 24 22 21 44 44 H 1.08001 * 120.08609 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1913 2.6648 -0.0005 5 6 1.4927 4.0114 -0.0011 6 6 2.8150 4.4298 -0.0005 7 8 3.1090 5.7550 -0.0016 8 6 3.8465 3.4818 0.0011 9 6 5.2555 3.9198 0.0022 10 8 5.5730 4.9453 0.5730 11 7 6.1907 3.1830 -0.6296 12 6 5.8022 1.9681 -1.3503 13 6 6.3063 0.7591 -0.6051 14 1 6.8602 0.8833 0.3136 15 6 6.0603 -0.5055 -1.0963 16 7 5.3863 -0.6566 -2.2154 17 14 6.6845 -2.0041 -0.1722 18 1 7.4089 -1.5669 1.0482 19 1 5.5352 -2.8615 0.2142 20 1 7.6061 -2.7753 -1.0447 21 6 7.5955 3.5971 -0.5956 22 6 7.8477 4.6358 -1.6903 23 6 9.2806 5.1598 -1.5757 24 6 7.6494 3.9890 -3.0625 25 6 3.5349 2.1203 -0.0058 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.1597 2.3450 -0.0014 30 1 0.6968 4.7414 -0.0019 31 1 3.1946 6.1382 -0.8853 32 1 4.7159 1.9218 -1.4254 33 1 6.2352 1.9850 -2.3505 34 1 5.2135 -1.5463 -2.5611 35 1 7.8225 4.0323 0.3776 36 1 8.2341 2.7298 -0.7637 37 1 7.1478 5.4632 -1.5741 38 1 9.9804 4.3323 -1.6919 39 1 9.4601 5.9002 -2.3553 40 1 9.4217 5.6206 -0.5980 41 1 6.6286 3.6156 -3.1442 42 1 7.8286 4.7291 -3.8424 43 1 8.3494 3.1615 -3.1787 44 1 4.3250 1.3840 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824234448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:34 Heat of formation + Delta-G solvation = -62.034676 kcal Electronic energy + Delta-G solvation = -26290.670251 eV Core-core repulsion = 22720.212752 eV Total energy + Delta-G solvation = -3570.457499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62911 -39.76522 -37.87986 -37.36532 -35.78502 -34.20028 -32.40149 -31.02983 -29.69150 -29.45154 -28.01568 -27.33175 -25.14599 -23.89518 -23.72118 -21.59898 -20.51339 -19.24029 -18.65396 -18.34806 -17.71088 -17.21404 -16.80976 -16.32468 -16.29151 -15.94126 -15.75764 -15.41201 -14.95519 -14.70867 -14.54138 -14.48545 -14.16055 -13.80294 -13.65653 -13.60034 -13.34338 -13.08974 -13.03336 -12.89963 -12.85355 -12.60070 -12.38762 -12.13621 -12.09462 -11.80037 -11.66095 -11.56842 -11.52010 -11.00413 -10.71378 -10.56388 -10.47944 -9.89830 -9.38060 -8.26257 -8.17148 -6.31202 -0.19148 0.19986 0.63858 1.38871 1.43834 1.51763 1.63023 1.81575 2.26485 2.42978 2.62299 3.11285 3.24629 3.60840 3.90588 3.98961 4.03994 4.14207 4.19222 4.33648 4.33783 4.42558 4.56251 4.62269 4.67656 4.78733 4.87005 4.89637 4.91635 4.95879 5.02550 5.04409 5.09107 5.17002 5.22225 5.30601 5.31772 5.42182 5.48178 5.67572 5.72064 5.83079 6.06036 6.58692 6.78429 6.81772 7.27861 7.41324 8.86709 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.006802 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.286855 B = 4115.620954 C = 6641.286185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.158 6.158 3 C -0.114 4.114 4 C -0.087 4.087 5 C -0.135 4.135 6 C 0.143 3.857 7 O -0.491 6.491 8 C -0.170 4.170 9 C 0.548 3.452 10 O -0.575 6.575 11 N -0.586 5.586 12 C 0.230 3.770 13 C -0.553 4.553 14 H 0.048 0.952 15 C 0.043 3.957 16 N -0.894 5.894 17 Si 0.938 3.062 18 H -0.275 1.275 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.126 3.874 22 C -0.102 4.102 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.067 4.067 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.403 0.597 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 5.547 -0.804 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.084 5.916 3 C -0.226 4.226 4 C -0.111 4.111 5 C -0.155 4.155 6 C 0.094 3.906 7 O -0.303 6.303 8 C -0.176 4.176 9 C 0.337 3.663 10 O -0.457 6.457 11 N -0.315 5.315 12 C 0.109 3.891 13 C -0.591 4.591 14 H 0.066 0.934 15 C -0.161 4.161 16 N -0.531 5.531 17 Si 0.764 3.236 18 H -0.200 1.200 19 H -0.202 1.202 20 H -0.202 1.202 21 C 0.003 3.997 22 C -0.122 4.122 23 C -0.192 4.192 24 C -0.195 4.195 25 C -0.090 4.090 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.183 0.817 30 H 0.189 0.811 31 H 0.261 0.739 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.631 4.778 -0.067 9.004 hybrid contribution -0.083 0.006 -0.126 0.151 sum -7.714 4.784 -0.193 9.079 Atomic orbital electron populations 1.23800 0.91383 1.08484 1.06764 1.86362 1.09777 1.02901 1.92539 1.21731 0.96108 0.97670 1.07123 1.21541 0.99255 0.91883 0.98445 1.21467 0.95054 0.96525 1.02439 1.18602 0.91285 0.83095 0.97594 1.84770 1.92748 1.18377 1.34358 1.20377 0.93742 0.94201 1.09250 1.18390 0.85882 0.83158 0.78870 1.90679 1.82446 1.25798 1.46803 1.48116 1.07192 1.25639 1.50544 1.19872 0.97446 0.80190 0.91546 1.21468 1.36950 0.91494 1.09166 0.93354 1.25399 0.94639 1.00692 0.95352 1.69983 1.38772 1.23980 1.20344 0.85807 0.78480 0.80316 0.79013 1.19955 1.20202 1.20152 1.21470 0.81529 0.97984 0.98735 1.21385 0.98674 0.97114 0.95010 1.21701 0.94042 1.01290 1.02180 1.21803 1.01032 1.00455 0.96166 1.22048 0.97398 0.95640 0.93943 0.88442 0.85912 0.88224 0.81703 0.81137 0.73857 0.92992 0.96026 0.92225 0.92364 0.90411 0.92705 0.91935 0.91011 0.92650 0.94483 0.91307 0.92857 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.14 113.37 1.04 -1.53 16 2 S -0.16 -5.27 22.56 -56.49 -1.27 -6.55 16 3 C -0.11 -4.04 6.10 22.55 0.14 -3.90 16 4 C -0.09 -2.35 9.35 22.43 0.21 -2.14 16 5 C -0.14 -3.61 9.97 22.32 0.22 -3.39 16 6 C 0.14 4.93 6.68 22.83 0.15 5.08 16 7 O -0.49 -15.91 12.06 -72.96 -0.88 -16.79 16 8 C -0.17 -7.11 5.42 -20.02 -0.11 -7.22 16 9 C 0.55 24.95 7.24 86.70 0.63 25.58 16 10 O -0.57 -27.93 15.51 13.75 0.21 -27.72 16 11 N -0.59 -26.11 2.25 -829.90 -1.87 -27.98 16 12 C 0.23 11.12 4.20 85.63 0.36 11.48 16 13 C -0.55 -28.72 7.14 25.60 0.18 -28.53 16 14 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 15 C 0.04 2.21 5.46 84.65 0.46 2.67 16 16 N -0.89 -47.56 13.29 21.45 0.28 -47.28 16 17 Si 0.94 41.90 29.54 68.60 2.03 43.92 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.13 4.97 4.65 86.38 0.40 5.37 16 22 C -0.10 -3.39 3.08 -10.80 -0.03 -3.42 16 23 C -0.13 -3.49 9.19 71.98 0.66 -2.83 16 24 C -0.14 -4.45 8.47 71.98 0.61 -3.84 16 25 C -0.07 -2.87 7.09 22.67 0.16 -2.71 16 26 H 0.10 1.56 7.74 -2.39 -0.02 1.54 16 27 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.10 1.51 7.74 -2.39 -0.02 1.49 16 29 H 0.17 3.04 5.84 -2.91 -0.02 3.02 16 30 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.40 9.40 9.06 -74.06 -0.67 8.72 16 32 H 0.05 2.65 4.09 -2.39 -0.01 2.64 16 33 H 0.02 1.11 6.05 -2.39 -0.01 1.10 16 34 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.06 2.36 7.64 -2.39 -0.02 2.34 16 36 H 0.08 3.12 7.73 -2.39 -0.02 3.10 16 37 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.37 6.00 -2.39 -0.01 1.36 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 44 H 0.16 7.81 4.10 -2.91 -0.01 7.80 16 Total: -1.00 -66.51 366.85 3.94 -62.57 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.36 Total: 29.17 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 5.08 Total: -9.34 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.58 Total: -75.26 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.67 Total: -44.51 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.27 Total: -6.55 kcal Total: -66.51 3.94 -62.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.534 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds