Wall clock time and date at job start Tue Mar 31 2020 14:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46935 * 120.00034 * 2 1 3 5 5 N 1.46498 * 109.47434 * 65.34244 * 4 2 1 6 6 C 1.46501 * 119.99716 * 83.86721 * 5 4 2 7 7 C 1.50709 * 109.46806 * 79.37535 * 6 5 4 8 8 H 1.07993 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99674 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99959 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00214 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47096 * 90.00554 * 11 9 7 13 13 H 1.48503 * 109.47136 * 210.00115 * 11 9 7 14 14 H 1.48493 * 109.47089 * 330.00119 * 11 9 7 15 15 C 1.34769 * 120.00455 * 263.87496 * 5 4 2 16 16 O 1.21528 * 119.99753 * 1.69218 * 15 5 4 17 17 C 1.48057 * 120.00557 * 181.69657 * 15 5 4 18 18 C 1.39637 * 119.97182 * 203.17009 * 17 15 5 19 19 C 1.37707 * 120.08048 * 179.97438 * 18 17 15 20 20 C 1.39689 * 120.02644 * 0.02562 * 19 18 17 21 21 C 1.47764 * 120.02846 * 179.97438 * 20 19 18 22 22 O 1.21469 * 120.00016 * 180.02562 * 21 20 19 23 23 O 1.34707 * 120.00100 * 0.02562 * 21 20 19 24 24 C 1.39829 * 119.94233 * 0.02562 * 20 19 18 25 25 F 1.35105 * 120.03832 * 179.97438 * 24 20 19 26 26 C 1.38200 * 119.92031 * 359.70176 * 24 20 19 27 27 H 1.08996 * 109.47624 * 301.86525 * 1 2 3 28 28 H 1.09004 * 109.47204 * 61.86699 * 1 2 3 29 29 H 1.09007 * 109.46972 * 181.86376 * 1 2 3 30 30 H 1.08999 * 109.47514 * 240.00046 * 2 1 3 31 31 H 1.09001 * 109.46677 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47066 * 299.99597 * 3 2 1 33 33 H 1.08999 * 109.46963 * 59.99709 * 3 2 1 34 34 H 1.09003 * 109.47214 * 305.34337 * 4 2 1 35 35 H 1.09002 * 109.47160 * 185.34548 * 4 2 1 36 36 H 1.09003 * 109.47209 * 199.37238 * 6 5 4 37 37 H 1.08998 * 109.47495 * 319.37461 * 6 5 4 38 38 H 0.97001 * 120.00095 * 179.97438 * 10 9 7 39 39 H 1.07998 * 119.96213 * 359.97438 * 18 17 15 40 40 H 1.07997 * 119.98546 * 180.02562 * 19 18 17 41 41 H 0.96705 * 117.00015 * 180.02562 * 23 21 20 42 42 H 1.08004 * 120.01682 * 180.29662 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6594 -2.1346 1.1867 6 6 2.4898 -3.0844 0.4419 7 6 3.6850 -3.4681 1.2759 8 1 3.8130 -3.0470 2.2620 9 6 4.6145 -4.3577 0.7801 10 7 5.6573 -4.6930 1.5080 11 14 4.3919 -5.0877 -0.9249 12 1 5.0579 -4.2173 -1.9268 13 1 4.9978 -6.4429 -0.9660 14 1 2.9433 -5.1834 -1.2371 15 6 0.5456 -2.5610 1.8141 16 8 -0.1598 -1.7679 2.4060 17 6 0.1812 -3.9957 1.7825 18 6 -1.1455 -4.3831 1.9818 19 6 -1.4870 -5.7168 1.9523 20 6 -0.5060 -6.6846 1.7234 21 6 -0.8723 -8.1158 1.6923 22 8 -0.0188 -8.9570 1.4936 23 8 -2.1527 -8.4877 1.8843 24 6 0.8230 -6.2979 1.5247 25 9 1.7734 -7.2324 1.3037 26 6 1.1622 -4.9584 1.5492 27 1 -0.3634 0.5425 0.8727 28 1 -0.3634 0.4846 -0.9063 29 1 -0.3633 -1.0272 0.0334 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6005 -0.2656 2.1366 35 1 3.1257 -0.6391 1.2984 36 1 1.9056 -3.9756 0.2125 37 1 2.8273 -2.6224 -0.4858 38 1 6.3110 -5.3191 1.1594 39 1 -1.9047 -3.6358 2.1593 40 1 -2.5136 -6.0146 2.1062 41 1 -2.3437 -9.4353 1.8554 42 1 2.1874 -4.6577 1.3912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826871300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:32 Heat of formation + Delta-G solvation = -122.434887 kcal Electronic energy + Delta-G solvation = -28315.505530 eV Core-core repulsion = 24176.215705 eV Total energy + Delta-G solvation = -4139.289825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.56122 -40.45902 -39.91773 -37.88692 -36.18185 -36.09576 -34.72030 -32.59086 -31.48734 -30.43646 -28.44330 -26.92233 -26.60000 -24.61619 -22.95892 -22.58975 -21.52732 -20.18493 -19.09880 -18.25010 -17.36601 -17.27860 -17.03714 -16.48238 -15.89069 -15.52170 -15.47125 -15.02787 -14.88688 -14.63386 -14.33308 -14.27285 -13.78063 -13.45687 -13.22815 -12.96151 -12.77959 -12.37795 -12.20475 -12.09573 -12.03271 -11.93028 -11.59554 -11.55100 -11.33003 -11.01345 -10.97373 -10.68041 -10.64850 -10.42347 -10.31010 -10.20731 -9.83380 -9.42194 -9.02993 -8.86722 -8.55029 -7.93744 -6.44786 -4.50449 0.39316 1.33515 2.34159 2.87714 3.08418 3.16044 3.18878 3.20783 3.54795 3.88610 4.09299 4.29918 4.70429 4.82025 4.89620 5.04979 5.13902 5.20176 5.27058 5.35192 5.45066 5.77132 5.81494 5.89247 5.90581 6.06544 6.07413 6.09603 6.16352 6.19460 6.20717 6.26355 6.34128 6.36478 6.50045 6.53497 6.56807 6.64902 6.97381 7.06178 7.21870 7.81689 7.85578 8.18112 8.58501 8.66794 9.10671 10.65636 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.005636 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.610144 B = 4966.461820 C = 6935.656826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.142 4.142 4 C 0.122 3.878 5 N -0.574 5.574 6 C 0.176 3.824 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.087 3.913 10 N -0.868 5.868 11 Si 0.859 3.141 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.260 1.260 15 C 0.555 3.445 16 O -0.551 6.551 17 C -0.068 4.068 18 C -0.096 4.096 19 C -0.058 4.058 20 C -0.157 4.157 21 C 0.525 3.475 22 O -0.500 6.500 23 O -0.512 6.512 24 C 0.151 3.849 25 F -0.111 7.111 26 C -0.160 4.160 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.273 0.727 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.413 0.587 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.683 1.266 -2.683 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.302 5.302 6 C 0.056 3.944 7 C -0.593 4.593 8 H 0.105 0.895 9 C -0.121 4.121 10 N -0.503 5.503 11 Si 0.684 3.316 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.184 1.184 15 C 0.343 3.657 16 O -0.432 6.432 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.076 4.076 20 C -0.160 4.160 21 C 0.369 3.631 22 O -0.388 6.388 23 O -0.324 6.324 24 C 0.131 3.869 25 F -0.089 7.089 26 C -0.177 4.177 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.271 0.729 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.460 1.721 -2.426 12.810 hybrid contribution 0.209 -1.461 -0.957 1.759 sum -12.251 0.260 -3.384 12.712 Atomic orbital electron populations 1.21758 0.95019 1.01836 1.00782 1.21506 0.96373 0.96118 0.99291 1.21747 1.01080 0.95646 1.01493 1.21499 1.00733 0.80041 0.97768 1.47756 1.23238 1.09317 1.49931 1.20735 0.91397 0.89573 0.92745 1.21270 1.05346 1.28092 1.04552 0.89512 1.24921 0.94439 0.95513 0.97240 1.69855 1.11050 1.32240 1.37108 0.87082 0.79897 0.79823 0.84785 1.19329 1.20005 1.18378 1.18088 0.81215 0.86962 0.79427 1.90704 1.51977 1.55511 1.45018 1.20134 0.93718 0.94056 0.99176 1.21230 0.95640 0.95915 0.98707 1.21136 0.98943 0.91452 0.96114 1.19264 0.93711 0.90681 1.12297 1.20722 0.79988 0.89353 0.73016 1.90958 1.50166 1.53036 1.44632 1.84538 1.29389 1.33825 1.84653 1.17713 0.84096 0.86873 0.98231 1.91615 1.62507 1.63851 1.90916 1.24073 1.07498 0.89696 0.96446 0.92478 0.93769 0.92921 0.91098 0.92470 0.92888 0.92686 0.90186 0.89714 0.92531 0.94992 0.91681 0.83798 0.83461 0.72856 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.27 37.16 0.31 -1.63 16 2 C -0.11 -1.63 3.12 -90.62 -0.28 -1.91 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.33 16 4 C 0.12 2.07 4.93 -4.04 -0.02 2.05 16 5 N -0.57 -10.99 2.26 -176.09 -0.40 -11.39 16 6 C 0.18 3.67 3.72 -5.19 -0.02 3.65 16 7 C -0.56 -13.60 7.84 -34.44 -0.27 -13.87 16 8 H 0.09 2.37 8.06 -52.49 -0.42 1.94 16 9 C 0.09 2.22 5.32 -17.82 -0.09 2.12 16 10 N -0.87 -23.98 13.96 55.43 0.77 -23.20 16 11 Si 0.86 19.25 27.34 -169.99 -4.65 14.60 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 15 C 0.56 10.66 6.24 -12.24 -0.08 10.58 16 16 O -0.55 -11.04 14.98 5.34 0.08 -10.96 16 17 C -0.07 -1.22 5.62 -104.91 -0.59 -1.81 16 18 C -0.10 -1.41 9.57 -39.25 -0.38 -1.79 16 19 C -0.06 -0.78 9.60 -39.23 -0.38 -1.15 16 20 C -0.16 -2.51 5.88 -104.87 -0.62 -3.13 16 21 C 0.53 7.86 8.27 34.62 0.29 8.15 16 22 O -0.50 -9.11 16.11 -19.24 -0.31 -9.42 16 23 O -0.51 -5.26 12.67 -40.51 -0.51 -5.77 16 24 C 0.15 2.89 7.28 -39.00 -0.28 2.60 16 25 F -0.11 -2.37 15.53 2.25 0.03 -2.34 16 26 C -0.16 -3.15 7.49 -39.16 -0.29 -3.45 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.83 6.36 -51.92 -0.33 0.50 16 30 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.37 7.27 -51.93 -0.38 0.99 16 35 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 36 H 0.06 1.19 3.28 -51.94 -0.17 1.02 16 37 H 0.03 0.65 7.35 -51.93 -0.38 0.27 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.14 1.87 7.81 -52.49 -0.41 1.46 16 40 H 0.15 1.49 7.60 -52.49 -0.40 1.09 16 41 H 0.41 2.27 9.11 45.56 0.42 2.69 16 42 H 0.23 5.00 2.37 -52.48 -0.12 4.88 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -29.83 350.15 -6.38 -36.21 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.31 Total: 7.91 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.36 Total: -0.92 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.38 Total: -34.59 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.74 Total: -26.15 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.03 Total: -2.34 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.65 Total: 14.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.83 -6.38 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826871300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.228 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds