Wall clock time and date at job start Tue Mar 31 2020 14:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46935 * 120.00034 * 2 1 3 5 5 N 1.46498 * 109.47434 * 65.34244 * 4 2 1 6 6 C 1.46501 * 119.99716 * 83.86721 * 5 4 2 7 7 C 1.50709 * 109.46806 * 79.37535 * 6 5 4 8 8 H 1.07993 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99674 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99959 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00214 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47096 * 90.00554 * 11 9 7 13 13 H 1.48503 * 109.47136 * 210.00115 * 11 9 7 14 14 H 1.48493 * 109.47089 * 330.00119 * 11 9 7 15 15 C 1.34769 * 120.00455 * 263.87496 * 5 4 2 16 16 O 1.21528 * 119.99753 * 1.69218 * 15 5 4 17 17 C 1.48057 * 120.00557 * 181.69657 * 15 5 4 18 18 C 1.39637 * 119.97182 * 203.17009 * 17 15 5 19 19 C 1.37707 * 120.08048 * 179.97438 * 18 17 15 20 20 C 1.39689 * 120.02644 * 0.02562 * 19 18 17 21 21 C 1.47764 * 120.02846 * 179.97438 * 20 19 18 22 22 O 1.21469 * 120.00016 * 180.02562 * 21 20 19 23 23 O 1.34707 * 120.00100 * 0.02562 * 21 20 19 24 24 C 1.39829 * 119.94233 * 0.02562 * 20 19 18 25 25 F 1.35105 * 120.03832 * 179.97438 * 24 20 19 26 26 C 1.38200 * 119.92031 * 359.70176 * 24 20 19 27 27 H 1.08996 * 109.47624 * 301.86525 * 1 2 3 28 28 H 1.09004 * 109.47204 * 61.86699 * 1 2 3 29 29 H 1.09007 * 109.46972 * 181.86376 * 1 2 3 30 30 H 1.08999 * 109.47514 * 240.00046 * 2 1 3 31 31 H 1.09001 * 109.46677 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47066 * 299.99597 * 3 2 1 33 33 H 1.08999 * 109.46963 * 59.99709 * 3 2 1 34 34 H 1.09003 * 109.47214 * 305.34337 * 4 2 1 35 35 H 1.09002 * 109.47160 * 185.34548 * 4 2 1 36 36 H 1.09003 * 109.47209 * 199.37238 * 6 5 4 37 37 H 1.08998 * 109.47495 * 319.37461 * 6 5 4 38 38 H 0.97001 * 120.00095 * 179.97438 * 10 9 7 39 39 H 1.07998 * 119.96213 * 359.97438 * 18 17 15 40 40 H 1.07997 * 119.98546 * 180.02562 * 19 18 17 41 41 H 0.96705 * 117.00015 * 180.02562 * 23 21 20 42 42 H 1.08004 * 120.01682 * 180.29662 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6594 -2.1346 1.1867 6 6 2.4898 -3.0844 0.4419 7 6 3.6850 -3.4681 1.2759 8 1 3.8130 -3.0470 2.2620 9 6 4.6145 -4.3577 0.7801 10 7 5.6573 -4.6930 1.5080 11 14 4.3919 -5.0877 -0.9249 12 1 5.0579 -4.2173 -1.9268 13 1 4.9978 -6.4429 -0.9660 14 1 2.9433 -5.1834 -1.2371 15 6 0.5456 -2.5610 1.8141 16 8 -0.1598 -1.7679 2.4060 17 6 0.1812 -3.9957 1.7825 18 6 -1.1455 -4.3831 1.9818 19 6 -1.4870 -5.7168 1.9523 20 6 -0.5060 -6.6846 1.7234 21 6 -0.8723 -8.1158 1.6923 22 8 -0.0188 -8.9570 1.4936 23 8 -2.1527 -8.4877 1.8843 24 6 0.8230 -6.2979 1.5247 25 9 1.7734 -7.2324 1.3037 26 6 1.1622 -4.9584 1.5492 27 1 -0.3634 0.5425 0.8727 28 1 -0.3634 0.4846 -0.9063 29 1 -0.3633 -1.0272 0.0334 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6005 -0.2656 2.1366 35 1 3.1257 -0.6391 1.2984 36 1 1.9056 -3.9756 0.2125 37 1 2.8273 -2.6224 -0.4858 38 1 6.3110 -5.3191 1.1594 39 1 -1.9047 -3.6358 2.1593 40 1 -2.5136 -6.0146 2.1062 41 1 -2.3437 -9.4353 1.8554 42 1 2.1874 -4.6577 1.3912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826871300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:31 Heat of formation + Delta-G solvation = -140.705972 kcal Electronic energy + Delta-G solvation = -28316.297824 eV Core-core repulsion = 24176.215705 eV Total energy + Delta-G solvation = -4140.082119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.07314 -41.80869 -41.16985 -39.19726 -37.63591 -37.15193 -36.14513 -34.42538 -32.79663 -31.77488 -30.18024 -28.08098 -27.83206 -25.93412 -24.62811 -23.99815 -22.73089 -21.45460 -20.50692 -19.41467 -19.15898 -18.68256 -18.36958 -17.90650 -17.18812 -16.99407 -16.86320 -16.51175 -16.33584 -16.03886 -15.86974 -15.52069 -15.20846 -14.70671 -14.58806 -14.47611 -14.23610 -13.75245 -13.58643 -13.43752 -13.29287 -13.14327 -12.90308 -12.71898 -12.66319 -12.63965 -12.43240 -12.00895 -11.90816 -11.82200 -11.79722 -11.69522 -11.52278 -10.93797 -10.89508 -10.28604 -9.92924 -9.48746 -8.44372 -6.51794 -0.91233 0.01831 1.08839 1.28615 1.34245 1.38778 1.81258 1.82270 2.10104 2.21251 2.52598 2.88300 2.95631 3.34489 3.61109 3.88669 3.95407 4.03704 4.06022 4.18200 4.20234 4.50565 4.56920 4.66154 4.66735 4.76494 4.84107 4.85977 4.87346 4.93838 4.97043 5.04169 5.09048 5.20855 5.23981 5.27932 5.41910 5.45794 5.48651 5.57315 5.65161 6.02842 6.47294 6.58736 6.86647 7.05722 7.17163 8.70073 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.005636 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.610144 B = 4966.461820 C = 6935.656826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.186 3.814 7 C -0.542 4.542 8 H 0.045 0.955 9 C 0.040 3.960 10 N -0.920 5.920 11 Si 0.909 3.091 12 H -0.252 1.252 13 H -0.285 1.285 14 H -0.242 1.242 15 C 0.552 3.448 16 O -0.561 6.561 17 C -0.081 4.081 18 C -0.081 4.081 19 C -0.026 4.026 20 C -0.155 4.155 21 C 0.535 3.465 22 O -0.539 6.539 23 O -0.488 6.488 24 C 0.122 3.878 25 F -0.134 7.134 26 C -0.181 4.181 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.272 0.728 39 H 0.170 0.830 40 H 0.195 0.805 41 H 0.438 0.562 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.368 1.539 -3.901 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 C -0.195 4.195 4 C -0.003 4.003 5 N -0.307 5.307 6 C 0.064 3.936 7 C -0.580 4.580 8 H 0.063 0.937 9 C -0.163 4.163 10 N -0.557 5.557 11 Si 0.731 3.269 12 H -0.176 1.176 13 H -0.211 1.211 14 H -0.165 1.165 15 C 0.341 3.659 16 O -0.443 6.443 17 C -0.085 4.085 18 C -0.099 4.099 19 C -0.044 4.044 20 C -0.157 4.157 21 C 0.380 3.620 22 O -0.431 6.431 23 O -0.302 6.302 24 C 0.102 3.898 25 F -0.112 7.112 26 C -0.198 4.198 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.188 0.812 40 H 0.213 0.787 41 H 0.300 0.700 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -16.195 2.010 -3.647 16.722 hybrid contribution 1.183 -1.544 -0.436 1.993 sum -15.012 0.466 -4.083 15.564 Atomic orbital electron populations 1.21690 0.94531 1.00812 1.01685 1.21469 0.96688 0.97281 0.97344 1.21715 1.01123 0.93932 1.02681 1.21625 1.00098 0.79346 0.99248 1.47799 1.23141 1.09869 1.49910 1.20523 0.90230 0.90390 0.92423 1.21311 1.06485 1.27058 1.03137 0.93701 1.25602 0.94099 0.95969 1.00645 1.69985 1.12578 1.33960 1.39216 0.86270 0.80877 0.78698 0.81009 1.17573 1.21061 1.16497 1.18324 0.81028 0.87578 0.78969 1.90684 1.52282 1.55971 1.45367 1.20170 0.95039 0.92823 1.00428 1.21553 0.94433 0.97227 0.96713 1.21614 1.00219 0.89966 0.92586 1.19458 0.92739 0.92305 1.11212 1.20478 0.80885 0.88458 0.72166 1.90960 1.51718 1.53872 1.46505 1.84461 1.26156 1.36239 1.83378 1.17934 0.85237 0.86304 1.00301 1.91550 1.63673 1.64519 1.91501 1.23612 1.06605 0.90698 0.98904 0.92933 0.91531 0.94748 0.91456 0.92440 0.90973 0.92203 0.90658 0.90946 0.91755 0.93872 0.91822 0.81230 0.78748 0.69955 0.78644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.27 71.98 0.60 -2.85 16 2 C -0.11 -2.98 3.12 -10.79 -0.03 -3.01 16 3 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 4 C 0.12 4.06 4.93 86.38 0.43 4.49 16 5 N -0.58 -22.42 2.26 -829.33 -1.88 -24.30 16 6 C 0.19 7.86 3.72 85.64 0.32 8.18 16 7 C -0.54 -27.85 7.84 25.60 0.20 -27.65 16 8 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 9 C 0.04 2.10 5.32 84.65 0.45 2.56 16 10 N -0.92 -53.60 13.96 21.45 0.30 -53.30 16 11 Si 0.91 40.35 27.34 68.60 1.88 42.22 16 12 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 15 C 0.55 21.03 6.24 86.85 0.54 21.57 16 16 O -0.56 -21.96 14.98 -3.80 -0.06 -22.01 16 17 C -0.08 -2.85 5.62 -20.05 -0.11 -2.97 16 18 C -0.08 -2.10 9.57 22.48 0.22 -1.88 16 19 C -0.03 -0.58 9.60 22.49 0.22 -0.37 16 20 C -0.15 -4.58 5.88 -20.02 -0.12 -4.70 16 21 C 0.54 14.58 8.27 70.34 0.58 15.16 16 22 O -0.54 -19.12 16.11 19.94 0.32 -18.80 16 23 O -0.49 -7.76 12.67 -56.17 -0.71 -8.47 16 24 C 0.12 4.67 7.28 22.65 0.16 4.83 16 25 F -0.13 -5.93 15.53 44.97 0.70 -5.23 16 26 C -0.18 -7.20 7.49 22.54 0.17 -7.03 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 1.02 6.36 -2.38 -0.02 1.01 16 30 H 0.07 1.91 7.92 -2.39 -0.02 1.89 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 2.61 7.27 -2.39 -0.02 2.60 16 35 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 36 H 0.07 2.72 3.28 -2.40 -0.01 2.72 16 37 H 0.04 1.73 7.35 -2.39 -0.02 1.71 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.17 3.63 7.81 -2.91 -0.02 3.60 16 40 H 0.20 2.57 7.60 -2.91 -0.02 2.55 16 41 H 0.44 2.82 9.11 -74.05 -0.67 2.15 16 42 H 0.20 9.07 2.37 -2.91 -0.01 9.06 16 Total: -1.00 -69.12 350.15 5.18 -63.94 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.35 Total: 21.93 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 4.28 Total: 4.02 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.58 Total: -77.60 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.45 Total: -49.28 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.70 Total: -5.23 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.22 kcal Total: -69.12 5.18 -63.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826871300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.764 kcal (2) G-P(sol) polarization free energy of solvation -69.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds