Wall clock time and date at job start Tue Mar 31 2020 13:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 N 1.46893 * 109.47050 * 59.99858 * 3 2 1 5 5 C 1.46903 * 110.99924 * 60.00126 * 4 3 2 6 6 C 1.53003 * 109.47090 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47202 * 179.97438 * 6 5 4 8 8 S 1.81000 * 109.47255 * 180.02562 * 7 6 5 9 9 C 1.76200 * 99.99883 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00131 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99788 * 179.97438 * 9 8 7 12 12 N 1.31627 * 120.00263 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99870 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47115 * 89.99905 * 13 11 9 15 15 H 1.48497 * 109.47022 * 210.00153 * 13 11 9 16 16 H 1.48505 * 109.47101 * 330.00261 * 13 11 9 17 17 C 1.50697 * 109.46783 * 180.02562 * 3 2 1 18 18 O 1.20822 * 120.00321 * 25.00173 * 17 3 2 19 19 O 1.34230 * 119.99571 * 205.00106 * 17 3 2 20 20 C 1.50706 * 109.46925 * 299.99957 * 3 2 1 21 21 C 1.38227 * 120.00001 * 329.72525 * 20 3 2 22 22 C 1.38236 * 119.99632 * 179.80666 * 21 20 3 23 23 C 1.38234 * 120.00422 * 0.40549 * 22 21 20 24 24 C 1.38238 * 119.99571 * 359.85221 * 23 22 21 25 25 C 1.38235 * 120.00244 * 359.95487 * 24 23 22 26 26 H 1.09000 * 109.47188 * 300.00076 * 1 2 3 27 27 H 1.09002 * 109.47288 * 60.00162 * 1 2 3 28 28 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46943 * 240.00383 * 2 1 3 30 30 H 1.08992 * 109.47290 * 119.99830 * 2 1 3 31 31 H 1.00904 * 110.99720 * 183.95159 * 4 3 2 32 32 H 1.08993 * 109.46933 * 299.99334 * 5 4 3 33 33 H 1.09003 * 109.46864 * 60.00013 * 5 4 3 34 34 H 1.08997 * 109.47273 * 300.00423 * 6 5 4 35 35 H 1.08998 * 109.47256 * 60.00160 * 6 5 4 36 36 H 1.09006 * 109.47316 * 300.00462 * 7 6 5 37 37 H 1.09002 * 109.47225 * 60.00005 * 7 6 5 38 38 H 0.96997 * 119.99999 * 180.02562 * 12 11 9 39 39 H 0.96705 * 116.99999 * 179.97438 * 19 17 3 40 40 H 1.07999 * 120.00632 * 0.02562 * 21 20 3 41 41 H 1.08002 * 119.99841 * 180.23188 * 22 21 20 42 42 H 1.08002 * 120.00586 * 179.82838 * 23 22 21 43 43 H 1.08001 * 119.99833 * 179.97438 * 24 23 22 44 44 H 1.07991 * 120.00410 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5503 2.1350 1.1994 5 6 2.0214 1.4689 2.4210 6 6 1.4927 2.2174 3.6463 7 6 1.9828 1.5233 4.9186 8 16 1.3569 2.4084 6.3681 9 6 2.0521 1.4226 7.6524 10 1 2.6591 0.5640 7.4056 11 6 1.8207 1.7501 8.9812 12 7 1.0813 2.7967 9.2819 13 14 2.5584 0.7053 10.3428 14 1 3.8974 1.2362 10.7037 15 1 1.6721 0.7464 11.5336 16 1 2.6921 -0.6972 9.8733 17 6 3.5470 1.4425 -0.0006 18 8 4.1510 0.4943 -0.4433 19 8 4.2183 2.4961 0.4906 20 6 1.5376 2.1529 -1.2305 21 6 1.3127 1.4429 -2.3950 22 6 0.8480 2.0939 -3.5225 23 6 0.6163 3.4562 -3.4880 24 6 0.8463 4.1671 -2.3249 25 6 1.3072 3.5155 -1.1962 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8197 3.1073 1.1908 32 1 1.6579 0.4415 2.4378 33 1 3.1113 1.4692 2.4378 34 1 1.8564 3.2448 3.6293 35 1 0.4029 2.2175 3.6297 36 1 1.6187 0.4960 4.9354 37 1 3.0727 1.5228 4.9355 38 1 0.9199 3.0258 10.2106 39 1 5.1840 2.4501 0.4691 40 1 1.4966 0.3791 -2.4230 41 1 0.6687 1.5385 -4.4313 42 1 0.2559 3.9653 -4.3697 43 1 0.6657 5.2316 -2.2980 44 1 1.4865 4.0708 -0.2875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828989086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:59 Heat of formation + Delta-G solvation = -75.439236 kcal Electronic energy + Delta-G solvation = -24932.033023 eV Core-core repulsion = 21360.994258 eV Total energy + Delta-G solvation = -3571.038764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34866 -39.39172 -37.30123 -36.45112 -34.27132 -32.43265 -31.95022 -30.80098 -30.64536 -27.36039 -25.67170 -24.72831 -23.26556 -22.85434 -22.48065 -21.12441 -19.69418 -18.26979 -17.81697 -17.42249 -17.31559 -16.08053 -15.66561 -15.56060 -14.98131 -14.80445 -14.66750 -14.37498 -14.17163 -13.97727 -13.65597 -13.31436 -13.07131 -12.91656 -12.73861 -12.36367 -12.04692 -11.95836 -11.80508 -11.67246 -11.50774 -11.31871 -11.17846 -11.07232 -10.89859 -10.86709 -10.76274 -10.62035 -10.39187 -9.55377 -9.17492 -9.11408 -9.05678 -8.71841 -8.30342 -6.52411 -6.22641 -3.92703 0.94280 1.13443 1.93511 2.70836 3.21249 3.22214 3.29126 3.48455 3.55185 3.86814 4.22676 4.24211 4.38556 4.70925 4.72313 4.83816 4.92633 5.10135 5.13341 5.18141 5.24426 5.25778 5.32592 5.34366 5.48518 5.57003 5.63123 5.68648 5.72887 5.84806 5.88058 5.98692 6.02414 6.16352 6.21661 6.23135 6.24753 6.29861 6.34706 6.56424 6.62381 6.68339 6.80567 7.09985 7.60170 7.60860 8.36899 9.23778 10.85526 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002465 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.548782 B =11355.810551 C =11640.197899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C 0.177 3.823 4 N -0.657 5.657 5 C 0.054 3.946 6 C -0.092 4.092 7 C -0.113 4.113 8 S -0.130 6.130 9 C -0.516 4.516 10 H 0.072 0.928 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.455 3.545 18 O -0.512 6.512 19 O -0.513 6.513 20 C -0.076 4.076 21 C -0.102 4.102 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.092 4.092 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.353 0.647 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.409 0.591 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -0.043 -26.110 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C 0.084 3.916 4 N -0.291 5.291 5 C -0.076 4.076 6 C -0.131 4.131 7 C -0.262 4.262 8 S 0.098 5.902 9 C -0.664 4.664 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.505 5.505 13 Si 0.744 3.256 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.295 3.705 18 O -0.398 6.398 19 O -0.325 6.325 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.138 4.138 25 C -0.110 4.110 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.268 0.732 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.932 0.430 -25.976 25.997 hybrid contribution 2.966 -1.480 0.867 3.427 sum 2.034 -1.050 -25.109 25.213 Atomic orbital electron populations 1.21733 0.93314 1.01530 1.03632 1.21591 0.97949 0.91169 1.03487 1.19848 0.83000 0.97458 0.91320 1.60704 1.61740 1.06842 0.99780 1.22248 0.97350 0.99321 0.88690 1.21206 1.01925 0.98946 0.91018 1.23216 1.02305 1.02237 0.98423 1.84621 1.68903 1.40753 0.95912 1.22690 1.36790 1.15100 0.91862 0.91007 1.25012 0.95072 0.95557 0.98152 1.70018 1.36223 1.25233 1.19053 0.86175 0.78891 0.80155 0.80369 1.20298 1.20738 1.19697 1.24937 0.92966 0.79465 0.73150 1.90691 1.70545 1.35478 1.43054 1.84548 1.26796 1.44764 1.76417 1.19256 1.01540 0.93870 0.93018 1.21121 0.98442 1.00294 0.92196 1.21121 0.99992 0.94780 0.98199 1.21223 0.99497 0.94408 0.98153 1.21157 0.99622 1.00145 0.92900 1.21003 0.97877 0.93544 0.98569 0.90678 0.92328 0.92723 0.90352 0.90731 0.82589 0.90297 0.94934 0.91575 0.90467 0.92097 0.92387 0.92310 0.73150 0.85447 0.85846 0.86001 0.85689 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.43 37.16 0.35 -1.06 16 2 C -0.10 -1.09 3.64 -26.73 -0.10 -1.19 16 3 C 0.18 1.90 0.50 -133.91 -0.07 1.84 16 4 N -0.66 -7.29 4.96 -102.32 -0.51 -7.80 16 5 C 0.05 0.70 4.95 -3.82 -0.02 0.68 16 6 C -0.09 -1.45 5.48 -26.73 -0.15 -1.59 16 7 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 8 S -0.13 -3.39 21.44 -107.50 -2.30 -5.69 16 9 C -0.52 -14.82 9.50 30.94 0.29 -14.52 16 10 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 11 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 12 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 13 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.46 5.42 5.89 36.00 0.21 5.63 16 18 O -0.51 -7.30 16.85 -18.75 -0.32 -7.62 16 19 O -0.51 -5.08 12.23 -39.26 -0.48 -5.56 16 20 C -0.08 -0.76 4.05 -104.62 -0.42 -1.19 16 21 C -0.10 -0.94 7.79 -39.59 -0.31 -1.25 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.09 -0.85 9.28 -39.58 -0.37 -1.22 16 26 H 0.07 0.83 7.60 -51.93 -0.39 0.43 16 27 H 0.06 0.55 6.19 -51.93 -0.32 0.23 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.79 6.24 -51.93 -0.32 0.46 16 30 H 0.07 0.84 6.40 -51.93 -0.33 0.51 16 31 H 0.35 3.71 6.42 -39.29 -0.25 3.46 16 32 H 0.08 1.03 6.30 -51.93 -0.33 0.70 16 33 H 0.03 0.44 6.64 -51.93 -0.34 0.09 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.41 2.54 9.10 45.56 0.41 2.96 16 40 H 0.13 1.08 6.17 -52.49 -0.32 0.76 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.09 6.27 -52.49 -0.33 0.76 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -33.35 369.73 -9.44 -42.79 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.46 Total: 4.98 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.65 Total: -17.99 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.23 Total: -33.06 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.80 Total: -13.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.30 Total: -5.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.35 -9.44 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828989086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.650 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds