Wall clock time and date at job start Tue Mar 31 2020 13:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 N 1.46893 * 109.47050 * 59.99858 * 3 2 1 5 5 C 1.46903 * 110.99924 * 60.00126 * 4 3 2 6 6 C 1.53003 * 109.47090 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47202 * 179.97438 * 6 5 4 8 8 S 1.81000 * 109.47255 * 180.02562 * 7 6 5 9 9 C 1.76200 * 99.99883 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00131 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99788 * 179.97438 * 9 8 7 12 12 N 1.31627 * 120.00263 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99870 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47115 * 89.99905 * 13 11 9 15 15 H 1.48497 * 109.47022 * 210.00153 * 13 11 9 16 16 H 1.48505 * 109.47101 * 330.00261 * 13 11 9 17 17 C 1.50697 * 109.46783 * 180.02562 * 3 2 1 18 18 O 1.20822 * 120.00321 * 25.00173 * 17 3 2 19 19 O 1.34230 * 119.99571 * 205.00106 * 17 3 2 20 20 C 1.50706 * 109.46925 * 299.99957 * 3 2 1 21 21 C 1.38227 * 120.00001 * 329.72525 * 20 3 2 22 22 C 1.38236 * 119.99632 * 179.80666 * 21 20 3 23 23 C 1.38234 * 120.00422 * 0.40549 * 22 21 20 24 24 C 1.38238 * 119.99571 * 359.85221 * 23 22 21 25 25 C 1.38235 * 120.00244 * 359.95487 * 24 23 22 26 26 H 1.09000 * 109.47188 * 300.00076 * 1 2 3 27 27 H 1.09002 * 109.47288 * 60.00162 * 1 2 3 28 28 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46943 * 240.00383 * 2 1 3 30 30 H 1.08992 * 109.47290 * 119.99830 * 2 1 3 31 31 H 1.00904 * 110.99720 * 183.95159 * 4 3 2 32 32 H 1.08993 * 109.46933 * 299.99334 * 5 4 3 33 33 H 1.09003 * 109.46864 * 60.00013 * 5 4 3 34 34 H 1.08997 * 109.47273 * 300.00423 * 6 5 4 35 35 H 1.08998 * 109.47256 * 60.00160 * 6 5 4 36 36 H 1.09006 * 109.47316 * 300.00462 * 7 6 5 37 37 H 1.09002 * 109.47225 * 60.00005 * 7 6 5 38 38 H 0.96997 * 119.99999 * 180.02562 * 12 11 9 39 39 H 0.96705 * 116.99999 * 179.97438 * 19 17 3 40 40 H 1.07999 * 120.00632 * 0.02562 * 21 20 3 41 41 H 1.08002 * 119.99841 * 180.23188 * 22 21 20 42 42 H 1.08002 * 120.00586 * 179.82838 * 23 22 21 43 43 H 1.08001 * 119.99833 * 179.97438 * 24 23 22 44 44 H 1.07991 * 120.00410 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5503 2.1350 1.1994 5 6 2.0214 1.4689 2.4210 6 6 1.4927 2.2174 3.6463 7 6 1.9828 1.5233 4.9186 8 16 1.3569 2.4084 6.3681 9 6 2.0521 1.4226 7.6524 10 1 2.6591 0.5640 7.4056 11 6 1.8207 1.7501 8.9812 12 7 1.0813 2.7967 9.2819 13 14 2.5584 0.7053 10.3428 14 1 3.8974 1.2362 10.7037 15 1 1.6721 0.7464 11.5336 16 1 2.6921 -0.6972 9.8733 17 6 3.5470 1.4425 -0.0006 18 8 4.1510 0.4943 -0.4433 19 8 4.2183 2.4961 0.4906 20 6 1.5376 2.1529 -1.2305 21 6 1.3127 1.4429 -2.3950 22 6 0.8480 2.0939 -3.5225 23 6 0.6163 3.4562 -3.4880 24 6 0.8463 4.1671 -2.3249 25 6 1.3072 3.5155 -1.1962 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8197 3.1073 1.1908 32 1 1.6579 0.4415 2.4378 33 1 3.1113 1.4692 2.4378 34 1 1.8564 3.2448 3.6293 35 1 0.4029 2.2175 3.6297 36 1 1.6187 0.4960 4.9354 37 1 3.0727 1.5228 4.9355 38 1 0.9199 3.0258 10.2106 39 1 5.1840 2.4501 0.4691 40 1 1.4966 0.3791 -2.4230 41 1 0.6687 1.5385 -4.4313 42 1 0.2559 3.9653 -4.3697 43 1 0.6657 5.2316 -2.2980 44 1 1.4865 4.0708 -0.2875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828989086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:58 Heat of formation + Delta-G solvation = -95.774925 kcal Electronic energy + Delta-G solvation = -24932.914844 eV Core-core repulsion = 21360.994258 eV Total energy + Delta-G solvation = -3571.920586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20481 -40.12791 -38.18649 -37.35276 -35.38479 -34.59942 -32.84111 -31.64095 -31.34617 -28.35796 -27.73290 -25.91921 -24.12525 -23.67428 -23.14461 -22.33871 -20.50431 -19.58704 -19.14700 -18.54702 -18.18475 -16.95398 -16.89594 -16.66562 -16.42701 -16.09775 -15.76593 -15.42691 -15.07832 -15.02651 -14.71708 -14.53254 -14.04190 -13.89437 -13.66962 -13.55040 -13.27992 -13.13528 -12.94823 -12.86810 -12.67486 -12.60537 -12.53250 -12.37421 -12.09721 -12.06977 -11.88402 -11.61868 -11.51372 -11.37098 -11.14424 -10.31872 -9.84136 -9.80093 -9.59628 -8.65534 -8.37449 -6.13023 0.28057 0.50977 1.03265 1.31077 1.38714 1.47986 1.73531 1.92980 2.27915 2.81854 2.93956 2.96712 3.33185 3.45275 3.60042 3.96281 4.05661 4.12404 4.15044 4.20560 4.26631 4.29621 4.38121 4.43474 4.48982 4.62418 4.66890 4.70789 4.77342 4.87704 5.00754 5.06815 5.15319 5.17459 5.20092 5.26432 5.39744 5.41100 5.51708 5.52134 5.57890 5.63501 5.77576 6.07823 6.18033 6.19436 6.79121 7.04980 8.71865 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002465 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.548782 B =11355.810551 C =11640.197899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.181 3.819 4 N -0.651 5.651 5 C 0.067 3.933 6 C -0.079 4.079 7 C -0.089 4.089 8 S -0.191 6.191 9 C -0.539 4.539 10 H 0.071 0.929 11 C 0.016 3.984 12 N -0.906 5.906 13 Si 0.992 3.008 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.264 1.264 17 C 0.456 3.544 18 O -0.540 6.540 19 O -0.511 6.511 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.126 4.126 25 C -0.105 4.105 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.357 0.643 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.272 0.728 39 H 0.425 0.575 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -0.356 -27.363 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.087 3.913 4 N -0.285 5.285 5 C -0.063 4.063 6 C -0.118 4.118 7 C -0.238 4.238 8 S 0.038 5.962 9 C -0.687 4.687 10 H 0.089 0.911 11 C -0.189 4.189 12 N -0.543 5.543 13 Si 0.814 3.186 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.188 1.188 17 C 0.297 3.703 18 O -0.429 6.429 19 O -0.325 6.325 20 C -0.091 4.091 21 C -0.132 4.132 22 C -0.144 4.144 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.123 4.123 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.287 0.713 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.689 0.139 -27.238 27.247 hybrid contribution 2.900 -1.327 1.131 3.384 sum 2.211 -1.188 -26.107 26.228 Atomic orbital electron populations 1.21658 0.92687 1.02009 1.03060 1.21596 0.98400 0.91069 1.03149 1.19845 0.82432 0.97614 0.91394 1.60645 1.61544 1.07034 0.99263 1.22000 0.96988 0.99036 0.88320 1.21064 1.01658 0.98934 0.90142 1.23143 1.01993 1.01693 0.97005 1.84596 1.69963 1.42678 0.98963 1.23037 1.37138 1.15426 0.93076 0.91098 1.26047 0.95288 0.96812 1.00792 1.70145 1.37395 1.26879 1.19863 0.85042 0.78254 0.78414 0.76863 1.19298 1.19839 1.18844 1.25170 0.93456 0.79205 0.72458 1.90678 1.71175 1.36529 1.44485 1.84517 1.28268 1.43923 1.75771 1.19247 1.02695 0.94271 0.92873 1.21256 0.98911 1.00572 0.92498 1.21420 0.99218 0.95244 0.98519 1.21565 0.98587 0.94404 0.98798 1.21440 0.99062 1.01183 0.92686 1.21138 0.98464 0.93430 0.99293 0.92042 0.91965 0.91750 0.90008 0.91739 0.82087 0.90158 0.95155 0.91356 0.90759 0.92012 0.92322 0.91945 0.71344 0.85279 0.83781 0.83611 0.83919 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.43 71.98 0.68 -1.87 16 2 C -0.10 -2.13 3.64 30.60 0.11 -2.02 16 3 C 0.18 3.74 0.50 2.04 0.00 3.74 16 4 N -0.65 -13.91 4.96 -477.64 -2.37 -16.28 16 5 C 0.07 1.68 4.95 86.30 0.43 2.11 16 6 C -0.08 -2.44 5.48 30.59 0.17 -2.27 16 7 C -0.09 -3.53 5.67 71.98 0.41 -3.13 16 8 S -0.19 -10.11 21.44 -56.49 -1.21 -11.32 16 9 C -0.54 -31.25 9.50 67.95 0.65 -30.60 16 10 H 0.07 3.98 7.80 -2.91 -0.02 3.95 16 11 C 0.02 0.89 5.49 84.86 0.47 1.36 16 12 N -0.91 -54.76 13.22 21.65 0.29 -54.48 16 13 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 17 C 0.46 10.54 5.89 71.23 0.42 10.96 16 18 O -0.54 -15.22 16.85 21.97 0.37 -14.85 16 19 O -0.51 -9.58 12.23 -51.42 -0.63 -10.21 16 20 C -0.09 -1.71 4.05 -19.86 -0.08 -1.79 16 21 C -0.11 -1.95 7.79 22.27 0.17 -1.78 16 22 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 23 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.10 -1.82 9.28 22.27 0.21 -1.61 16 26 H 0.06 1.31 7.60 -2.39 -0.02 1.29 16 27 H 0.06 1.11 6.19 -2.39 -0.01 1.09 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.60 6.24 -2.39 -0.01 1.59 16 30 H 0.06 1.43 6.40 -2.39 -0.02 1.41 16 31 H 0.36 7.17 6.42 -89.69 -0.58 6.59 16 32 H 0.08 2.03 6.30 -2.39 -0.02 2.01 16 33 H 0.03 0.79 6.64 -2.39 -0.02 0.77 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 39 H 0.42 4.81 9.10 -74.05 -0.67 4.13 16 40 H 0.13 2.07 6.17 -2.91 -0.02 2.05 16 41 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.13 2.09 6.27 -2.91 -0.02 2.07 16 Total: -1.00 -71.72 369.73 2.55 -69.17 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.22 Total: 23.05 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 4.30 Total: -31.21 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -2.08 Total: -70.75 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.26 Total: -25.06 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -10.11 SS G_CDS: -1.21 Total: -11.32 kcal Total: -71.72 2.55 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828989086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.610 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds