Wall clock time and date at job start Tue Mar 31 2020 13:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 N 1.46905 * 109.46947 * 304.99800 * 3 2 1 5 5 C 1.46901 * 110.99870 * 300.00190 * 4 3 2 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 S 1.81007 * 109.46892 * 179.97438 * 7 6 5 9 9 C 1.76199 * 99.99998 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00023 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99718 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00348 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99575 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47622 * 60.00349 * 13 11 9 15 15 H 1.48506 * 109.46757 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47416 * 299.99792 * 13 11 9 17 17 C 1.50697 * 109.47213 * 184.99847 * 3 2 1 18 18 O 1.20827 * 120.00461 * 334.99868 * 17 3 2 19 19 O 1.34235 * 120.00187 * 154.99934 * 17 3 2 20 20 C 1.50697 * 109.47371 * 64.99777 * 3 2 1 21 21 C 1.38238 * 119.99909 * 29.72480 * 20 3 2 22 22 C 1.38230 * 119.99823 * 179.76661 * 21 20 3 23 23 C 1.38239 * 120.00078 * 0.50921 * 22 21 20 24 24 C 1.38232 * 119.99957 * 359.74636 * 23 22 21 25 25 C 1.38230 * 120.00163 * 210.00257 * 20 3 2 26 26 H 1.09000 * 109.47135 * 60.00406 * 1 2 3 27 27 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47612 * 300.00374 * 1 2 3 29 29 H 1.09001 * 109.47612 * 239.99626 * 2 1 3 30 30 H 1.09000 * 109.47135 * 119.99594 * 2 1 3 31 31 H 1.00901 * 110.99869 * 176.04901 * 4 3 2 32 32 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 33 33 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 34 34 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 35 35 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 36 36 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 37 37 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 38 38 H 0.96997 * 120.00488 * 180.02562 * 12 11 9 39 39 H 0.96699 * 117.00386 * 180.02562 * 19 17 3 40 40 H 1.08002 * 119.99864 * 0.02562 * 21 20 3 41 41 H 1.08005 * 120.00209 * 180.23420 * 22 21 20 42 42 H 1.08008 * 120.00025 * 179.72376 * 23 22 21 43 43 H 1.07997 * 119.99688 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00381 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4542 2.1689 -1.1346 5 6 1.8225 1.5391 -2.4096 6 6 1.1960 2.3223 -3.5650 7 6 1.5801 1.6666 -4.8930 8 16 0.8383 2.5927 -6.2599 9 6 1.4269 1.6471 -7.6251 10 1 2.0513 0.7826 -7.4541 11 6 1.0873 2.0126 -8.9204 12 7 0.3259 3.0659 -9.1288 13 14 1.7108 1.0097 -10.3677 14 1 1.2216 -0.3874 -10.2493 15 1 1.2112 1.6040 -11.6336 16 1 3.1958 1.0156 -10.3710 17 6 3.5418 1.4443 -0.1238 18 8 4.1792 0.4843 0.2396 19 8 4.1717 2.5125 -0.6378 20 6 1.6413 2.1163 1.2876 21 6 1.5008 1.3707 2.4432 22 6 1.1398 1.9896 3.6253 23 6 0.9090 3.3524 3.6497 24 6 1.0444 4.0971 2.4930 25 6 1.4105 3.4790 1.3120 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7247 3.1409 -1.1200 32 1 2.9073 1.5411 -2.5159 33 1 1.4576 0.5121 -2.4262 34 1 0.1112 2.3206 -3.4589 35 1 1.5613 3.3491 -3.5482 36 1 2.6648 1.6685 -4.9988 37 1 1.2152 0.6396 -4.9101 38 1 0.0883 3.3211 -10.0339 39 1 5.1358 2.4670 -0.6975 40 1 1.6771 0.3054 2.4233 41 1 1.0337 1.4077 4.5291 42 1 0.6226 3.8352 4.5725 43 1 0.8637 5.1616 2.5120 44 1 1.5155 4.0608 0.4081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828989087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:01 Heat of formation + Delta-G solvation = -95.456169 kcal Electronic energy + Delta-G solvation = -24936.404820 eV Core-core repulsion = 21364.498056 eV Total energy + Delta-G solvation = -3571.906764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19985 -40.12044 -38.20167 -37.34983 -35.36750 -34.59743 -32.80563 -31.65710 -31.37704 -28.35620 -27.73066 -25.91186 -24.14191 -23.67326 -23.10407 -22.34579 -20.51840 -19.58219 -19.14568 -18.55753 -18.18704 -16.95523 -16.89290 -16.66808 -16.41751 -16.08857 -15.76436 -15.43010 -15.07779 -15.02043 -14.71455 -14.53503 -14.05294 -13.86881 -13.64620 -13.56280 -13.30625 -13.13373 -12.93038 -12.86524 -12.67289 -12.59502 -12.54177 -12.37667 -12.09403 -12.06440 -11.86684 -11.60539 -11.54395 -11.37147 -11.13418 -10.31978 -9.84934 -9.80438 -9.59825 -8.65423 -8.37082 -6.12797 0.27977 0.50954 1.03278 1.31034 1.40237 1.46982 1.73524 1.93003 2.28268 2.81949 2.93923 2.96967 3.33373 3.45834 3.59824 3.96210 4.05185 4.12439 4.14483 4.20762 4.27483 4.29863 4.37336 4.43683 4.48929 4.62586 4.66709 4.71667 4.77531 4.87427 5.00951 5.06829 5.15464 5.17558 5.20635 5.26442 5.39582 5.41123 5.51627 5.53340 5.57898 5.63475 5.77624 6.07783 6.17979 6.19686 6.79134 7.05128 8.71983 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.002469 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.312672 B =11338.057830 C =11622.703221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.181 3.819 4 N -0.651 5.651 5 C 0.067 3.933 6 C -0.079 4.079 7 C -0.089 4.089 8 S -0.190 6.190 9 C -0.540 4.540 10 H 0.071 0.929 11 C 0.016 3.984 12 N -0.906 5.906 13 Si 0.992 3.008 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.265 1.265 17 C 0.456 3.544 18 O -0.540 6.540 19 O -0.511 6.511 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.126 4.126 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.357 0.643 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.272 0.728 39 H 0.425 0.575 40 H 0.130 0.870 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -1.162 27.124 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 C 0.087 3.913 4 N -0.284 5.284 5 C -0.063 4.063 6 C -0.118 4.118 7 C -0.238 4.238 8 S 0.038 5.962 9 C -0.688 4.688 10 H 0.089 0.911 11 C -0.189 4.189 12 N -0.543 5.543 13 Si 0.814 3.186 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.190 1.190 17 C 0.297 3.703 18 O -0.429 6.429 19 O -0.325 6.325 20 C -0.091 4.091 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.123 4.123 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.287 0.713 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.512 -0.661 27.141 27.191 hybrid contribution 2.800 -1.297 -1.390 3.385 sum 4.312 -1.958 25.751 26.183 Atomic orbital electron populations 1.21616 0.92676 1.01901 1.03057 1.21598 0.98369 0.91040 1.03146 1.19838 0.82133 0.97553 0.91751 1.60663 1.60651 1.06961 1.00169 1.21995 0.97376 0.99199 0.87753 1.21064 1.01743 0.98984 0.90008 1.23142 1.01848 1.01647 0.97197 1.84594 1.69257 1.42717 0.99612 1.23009 1.37144 1.15685 0.92947 0.91082 1.26043 0.94825 0.96531 1.01513 1.70136 1.35385 1.25947 1.22801 0.85101 0.78818 0.78331 0.76389 1.18972 1.19900 1.19022 1.25173 0.93531 0.79429 0.72146 1.90680 1.68945 1.36336 1.46921 1.84516 1.29553 1.42817 1.75596 1.19250 1.03151 0.94341 0.92387 1.21278 0.99196 1.00498 0.92357 1.21424 0.99413 0.95476 0.98074 1.21568 0.98441 0.94199 0.99161 1.21440 0.99373 1.01206 0.92348 1.21139 0.98430 0.93631 0.99104 0.91967 0.91809 0.92134 0.91931 0.89870 0.82102 0.95185 0.90163 0.90736 0.91372 0.92341 0.91998 0.91938 0.71350 0.85222 0.83781 0.83609 0.83911 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.44 71.98 0.68 -1.86 16 2 C -0.10 -2.11 3.47 30.59 0.11 -2.01 16 3 C 0.18 3.74 0.50 2.03 0.00 3.74 16 4 N -0.65 -13.86 4.77 -477.63 -2.28 -16.14 16 5 C 0.07 1.68 4.82 86.30 0.42 2.10 16 6 C -0.08 -2.44 5.48 30.59 0.17 -2.27 16 7 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 8 S -0.19 -10.09 21.44 -56.49 -1.21 -11.30 16 9 C -0.54 -31.30 9.50 67.95 0.65 -30.66 16 10 H 0.07 3.97 7.80 -2.91 -0.02 3.95 16 11 C 0.02 0.91 5.49 84.86 0.47 1.38 16 12 N -0.91 -54.77 13.22 21.65 0.29 -54.48 16 13 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 C 0.46 10.55 5.88 71.23 0.42 10.97 16 18 O -0.54 -15.24 16.95 21.96 0.37 -14.87 16 19 O -0.51 -9.59 12.23 -51.47 -0.63 -10.22 16 20 C -0.09 -1.72 4.11 -19.87 -0.08 -1.80 16 21 C -0.12 -1.97 8.17 22.27 0.18 -1.79 16 22 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 23 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.10 -1.81 9.28 22.27 0.21 -1.61 16 26 H 0.06 1.34 7.28 -2.39 -0.02 1.33 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.10 6.64 -2.39 -0.02 1.08 16 29 H 0.06 1.39 6.68 -2.39 -0.02 1.37 16 30 H 0.08 1.60 6.11 -2.39 -0.01 1.59 16 31 H 0.36 7.15 6.41 -89.69 -0.58 6.57 16 32 H 0.03 0.78 6.64 -2.39 -0.02 0.76 16 33 H 0.08 2.02 6.34 -2.39 -0.02 2.01 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 2.31 8.14 -2.40 -0.02 2.29 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.42 4.82 9.10 -74.06 -0.67 4.14 16 40 H 0.13 2.07 6.05 -2.91 -0.02 2.06 16 41 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.13 2.09 6.28 -2.91 -0.02 2.07 16 Total: -1.00 -71.68 369.94 2.63 -69.05 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.22 Total: 23.13 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 4.29 Total: -31.25 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.99 Total: -70.62 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.26 Total: -25.09 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -1.21 Total: -11.30 kcal Total: -71.68 2.63 -69.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828989087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.407 kcal (2) G-P(sol) polarization free energy of solvation -71.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds