Wall clock time and date at job start Tue Mar 31 2020 14:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 C 1.52997 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47396 * 54.99624 * 4 3 2 6 6 O 1.42904 * 109.47147 * 295.00184 * 4 3 2 7 7 C 1.52999 * 109.47615 * 174.99725 * 4 3 2 8 8 C 1.52992 * 109.47499 * 184.99852 * 7 4 3 9 9 N 1.46505 * 109.47514 * 180.02562 * 8 7 4 10 10 C 1.34772 * 120.00364 * 180.02562 * 9 8 7 11 11 O 1.21614 * 119.99904 * 0.02562 * 10 9 8 12 12 C 1.47424 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.39673 * 120.21861 * 0.24995 * 12 10 9 14 14 C 1.37801 * 119.94403 * 180.27257 * 13 12 10 15 15 C 1.38666 * 120.37946 * 359.73245 * 14 13 12 16 16 C 1.37910 * 120.43573 * 0.02562 * 15 14 13 17 17 C 1.39115 * 120.05151 * 359.97438 * 16 15 14 18 18 S 1.76194 * 120.18617 * 180.02562 * 17 16 15 19 19 C 1.76194 * 100.00243 * 353.16114 * 18 17 16 20 20 H 1.07995 * 120.00099 * 354.34284 * 19 18 17 21 21 C 1.38808 * 119.99872 * 174.34821 * 19 18 17 22 22 N 1.31557 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00267 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47088 * 89.99914 * 23 21 19 25 25 H 1.48499 * 109.47298 * 210.00147 * 23 21 19 26 26 H 1.48497 * 109.47183 * 330.00404 * 23 21 19 27 27 H 1.08994 * 109.47344 * 299.99979 * 1 2 3 28 28 H 1.09003 * 109.47552 * 60.00454 * 1 2 3 29 29 H 1.09010 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47344 * 240.00020 * 2 1 3 31 31 H 1.09003 * 109.47552 * 119.99546 * 2 1 3 32 32 H 1.09000 * 109.47767 * 59.99726 * 3 2 1 33 33 H 1.09003 * 109.47122 * 299.99832 * 3 2 1 34 34 H 0.96703 * 113.99496 * 299.99706 * 6 4 3 35 35 H 1.09006 * 109.46696 * 65.00159 * 7 4 3 36 36 H 1.09003 * 109.47374 * 305.00513 * 7 4 3 37 37 H 1.08998 * 109.47028 * 60.00116 * 8 7 4 38 38 H 1.09003 * 109.47775 * 300.00353 * 8 7 4 39 39 H 0.97001 * 119.99234 * 0.02562 * 9 8 7 40 40 H 1.08008 * 120.02716 * 0.02562 * 13 12 10 41 41 H 1.07999 * 119.81624 * 179.74244 * 14 13 12 42 42 H 1.07997 * 119.78096 * 180.02562 * 15 14 13 43 43 H 1.08002 * 119.97140 * 180.02562 * 16 15 14 44 44 H 0.96994 * 120.00489 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9337 0.8531 -0.8409 6 8 4.0457 0.8734 1.2220 7 6 4.0799 2.8796 -0.1251 8 6 5.6047 2.8706 -0.2498 9 7 6.0931 4.2466 -0.3697 10 6 7.4140 4.4846 -0.4925 11 8 8.2004 3.5570 -0.5043 12 6 7.9055 5.8693 -0.6125 13 6 7.0067 6.9383 -0.5942 14 6 7.4718 8.2301 -0.7125 15 6 8.8299 8.4771 -0.8443 16 6 9.7316 7.4337 -0.8592 17 6 9.2818 6.1226 -0.7411 18 16 10.4307 4.7868 -0.7590 19 6 11.9104 5.6611 -1.1470 20 1 11.8694 6.7143 -1.3824 21 6 13.1289 4.9961 -1.1503 22 7 14.2337 5.6488 -1.4405 23 14 13.1999 3.1746 -0.7428 24 1 13.0460 2.3821 -1.9892 25 1 14.5074 2.8587 -0.1136 26 1 12.1028 2.8348 0.1984 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9565 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 3.7600 1.3480 2.0146 35 1 3.7911 3.4464 0.7601 36 1 3.6456 3.3432 -1.0110 37 1 5.8935 2.3038 -1.1350 38 1 6.0391 2.4071 0.6360 39 1 5.4658 4.9864 -0.3606 40 1 5.9477 6.7524 -0.4915 41 1 6.7747 9.0549 -0.7023 42 1 9.1839 9.4933 -0.9358 43 1 10.7878 7.6347 -0.9618 44 1 15.0850 5.1841 -1.4432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832627106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:33 Heat of formation + Delta-G solvation = -82.181595 kcal Electronic energy + Delta-G solvation = -23989.704435 eV Core-core repulsion = 20418.373300 eV Total energy + Delta-G solvation = -3571.331135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.66964 -38.59987 -37.52564 -34.92021 -34.45660 -32.70338 -31.85489 -30.43570 -30.38102 -28.13356 -25.89999 -24.55419 -22.86694 -22.06810 -21.76195 -21.40239 -20.16277 -18.32531 -17.18143 -16.75382 -16.35746 -15.99523 -15.77548 -15.33848 -15.15408 -14.69622 -14.55384 -14.24084 -13.92048 -13.78879 -13.66164 -13.44820 -13.14396 -12.63756 -12.33054 -12.26332 -12.14540 -12.06653 -11.88317 -11.49711 -11.38603 -11.31368 -11.17145 -11.06862 -11.02012 -10.90385 -10.49991 -10.25348 -9.77274 -9.69172 -9.41944 -8.87137 -8.83674 -8.41674 -8.21356 -6.79270 -6.46949 -4.18218 1.42204 1.91189 2.88284 3.22233 3.35816 3.38354 3.42557 3.48506 4.05028 4.16560 4.31550 4.39350 4.53282 4.61425 4.65144 4.77170 4.84325 4.96137 4.98870 5.08761 5.18978 5.24837 5.30558 5.36569 5.40222 5.49962 5.52130 5.57811 5.70012 5.80029 5.82796 5.95239 5.97297 6.02187 6.07225 6.26463 6.49781 6.65703 6.75127 6.95897 7.05646 7.36135 7.45358 7.76138 7.80236 8.34751 8.67849 8.96853 10.60053 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002771 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.227776 B =10102.844502 C =11785.954261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.109 3.891 5 H 0.102 0.898 6 O -0.557 6.557 7 C -0.163 4.163 8 C 0.125 3.875 9 N -0.739 5.739 10 C 0.553 3.447 11 O -0.511 6.511 12 C -0.173 4.173 13 C -0.065 4.065 14 C -0.178 4.178 15 C -0.077 4.077 16 C -0.144 4.144 17 C -0.031 4.031 18 S 0.087 5.913 19 C -0.579 4.579 20 H 0.106 0.894 21 C 0.103 3.897 22 N -0.863 5.863 23 Si 0.848 3.152 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.232 1.232 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.373 0.627 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.394 0.606 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.465 -3.507 3.416 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.188 4.188 4 C 0.049 3.951 5 H 0.119 0.881 6 O -0.362 6.362 7 C -0.202 4.202 8 C 0.002 3.998 9 N -0.393 5.393 10 C 0.342 3.658 11 O -0.388 6.388 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.202 4.202 15 C -0.099 4.099 16 C -0.169 4.169 17 C -0.150 4.150 18 S 0.348 5.652 19 C -0.725 4.725 20 H 0.123 0.877 21 C -0.108 4.108 22 N -0.496 5.496 23 Si 0.672 3.328 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.156 1.156 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.220 0.780 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.229 0.771 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.164 0.836 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.234 -6.068 3.143 25.179 hybrid contribution -0.192 1.669 0.165 1.688 sum -24.426 -4.399 3.308 25.038 Atomic orbital electron populations 1.21790 0.96019 1.01628 1.01632 1.21472 0.95465 0.96372 1.02722 1.22330 0.95865 0.97832 1.02815 1.21898 0.92290 0.92773 0.88127 0.88055 1.86636 1.77004 1.57052 1.15541 1.22531 0.96050 0.98284 1.03289 1.21182 0.92413 0.83531 1.02695 1.45855 1.07614 1.08402 1.77477 1.18284 0.81727 0.89087 0.76732 1.90768 1.54228 1.45043 1.48809 1.19183 0.92675 0.92208 1.14660 1.20885 0.97423 0.92489 0.97765 1.20716 0.95565 0.95990 1.07919 1.21140 0.93187 0.98503 0.97035 1.21576 1.01483 0.91119 1.02722 1.22523 0.96023 0.99164 0.97269 1.84120 0.98009 1.06895 1.76145 1.23539 0.93321 1.01501 1.54146 0.87665 1.24807 0.94409 0.98827 0.92763 1.69908 0.98512 1.37041 1.44179 0.86898 0.80160 0.84635 0.81119 1.18779 1.19367 1.15602 0.92877 0.92864 0.92766 0.91988 0.91290 0.91613 0.90995 0.77978 0.90986 0.90393 0.91715 0.90943 0.77134 0.87012 0.86804 0.86608 0.83611 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.77 5.83 -26.73 -0.16 -0.92 16 3 C -0.15 -0.85 4.89 -26.73 -0.13 -0.98 16 4 C 0.11 0.79 2.97 -26.73 -0.08 0.71 16 5 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 6 O -0.56 -4.82 12.41 -35.23 -0.44 -5.26 16 7 C -0.16 -1.19 5.01 -26.74 -0.13 -1.33 16 8 C 0.13 1.47 5.57 -4.04 -0.02 1.45 16 9 N -0.74 -9.82 5.51 -61.38 -0.34 -10.16 16 10 C 0.55 10.32 7.75 -12.52 -0.10 10.23 16 11 O -0.51 -11.59 13.77 5.26 0.07 -11.52 16 12 C -0.17 -3.30 5.89 -104.76 -0.62 -3.92 16 13 C -0.07 -0.98 9.53 -39.21 -0.37 -1.36 16 14 C -0.18 -2.62 10.02 -39.58 -0.40 -3.02 16 15 C -0.08 -1.29 10.03 -39.54 -0.40 -1.69 16 16 C -0.14 -3.02 9.22 -39.38 -0.36 -3.39 16 17 C -0.03 -0.69 6.14 -38.39 -0.24 -0.93 16 18 S 0.09 2.24 16.53 -107.50 -1.78 0.47 16 19 C -0.58 -16.39 9.54 30.94 0.30 -16.10 16 20 H 0.11 3.06 5.21 -52.49 -0.27 2.79 16 21 C 0.10 2.94 5.50 -17.46 -0.10 2.84 16 22 N -0.86 -25.29 13.96 55.49 0.77 -24.52 16 23 Si 0.85 21.12 27.74 -169.99 -4.71 16.41 16 24 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.23 -5.78 6.74 56.52 0.38 -5.40 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 7.82 -51.93 -0.41 0.08 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.37 2.00 9.05 45.56 0.41 2.41 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 39 H 0.39 3.99 6.50 -40.82 -0.27 3.73 16 40 H 0.11 1.21 6.40 -52.48 -0.34 0.88 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.15 3.33 5.04 -52.49 -0.26 3.06 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.28 372.37 -9.01 -42.30 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.77 Total: 5.54 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.44 Total: -18.86 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.44 Total: -34.68 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.36 Total: -16.78 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.78 Total: 0.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.28 -9.01 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832627106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.887 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds