Wall clock time and date at job start Tue Mar 31 2020 14:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 C 1.52997 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47396 * 54.99624 * 4 3 2 6 6 O 1.42904 * 109.47147 * 295.00184 * 4 3 2 7 7 C 1.52999 * 109.47615 * 174.99725 * 4 3 2 8 8 C 1.52992 * 109.47499 * 184.99852 * 7 4 3 9 9 N 1.46505 * 109.47514 * 180.02562 * 8 7 4 10 10 C 1.34772 * 120.00364 * 180.02562 * 9 8 7 11 11 O 1.21614 * 119.99904 * 0.02562 * 10 9 8 12 12 C 1.47424 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.39673 * 120.21861 * 0.24995 * 12 10 9 14 14 C 1.37801 * 119.94403 * 180.27257 * 13 12 10 15 15 C 1.38666 * 120.37946 * 359.73245 * 14 13 12 16 16 C 1.37910 * 120.43573 * 0.02562 * 15 14 13 17 17 C 1.39115 * 120.05151 * 359.97438 * 16 15 14 18 18 S 1.76194 * 120.18617 * 180.02562 * 17 16 15 19 19 C 1.76194 * 100.00243 * 353.16114 * 18 17 16 20 20 H 1.07995 * 120.00099 * 354.34284 * 19 18 17 21 21 C 1.38808 * 119.99872 * 174.34821 * 19 18 17 22 22 N 1.31557 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00267 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47088 * 89.99914 * 23 21 19 25 25 H 1.48499 * 109.47298 * 210.00147 * 23 21 19 26 26 H 1.48497 * 109.47183 * 330.00404 * 23 21 19 27 27 H 1.08994 * 109.47344 * 299.99979 * 1 2 3 28 28 H 1.09003 * 109.47552 * 60.00454 * 1 2 3 29 29 H 1.09010 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47344 * 240.00020 * 2 1 3 31 31 H 1.09003 * 109.47552 * 119.99546 * 2 1 3 32 32 H 1.09000 * 109.47767 * 59.99726 * 3 2 1 33 33 H 1.09003 * 109.47122 * 299.99832 * 3 2 1 34 34 H 0.96703 * 113.99496 * 299.99706 * 6 4 3 35 35 H 1.09006 * 109.46696 * 65.00159 * 7 4 3 36 36 H 1.09003 * 109.47374 * 305.00513 * 7 4 3 37 37 H 1.08998 * 109.47028 * 60.00116 * 8 7 4 38 38 H 1.09003 * 109.47775 * 300.00353 * 8 7 4 39 39 H 0.97001 * 119.99234 * 0.02562 * 9 8 7 40 40 H 1.08008 * 120.02716 * 0.02562 * 13 12 10 41 41 H 1.07999 * 119.81624 * 179.74244 * 14 13 12 42 42 H 1.07997 * 119.78096 * 180.02562 * 15 14 13 43 43 H 1.08002 * 119.97140 * 180.02562 * 16 15 14 44 44 H 0.96994 * 120.00489 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9337 0.8531 -0.8409 6 8 4.0457 0.8734 1.2220 7 6 4.0799 2.8796 -0.1251 8 6 5.6047 2.8706 -0.2498 9 7 6.0931 4.2466 -0.3697 10 6 7.4140 4.4846 -0.4925 11 8 8.2004 3.5570 -0.5043 12 6 7.9055 5.8693 -0.6125 13 6 7.0067 6.9383 -0.5942 14 6 7.4718 8.2301 -0.7125 15 6 8.8299 8.4771 -0.8443 16 6 9.7316 7.4337 -0.8592 17 6 9.2818 6.1226 -0.7411 18 16 10.4307 4.7868 -0.7590 19 6 11.9104 5.6611 -1.1470 20 1 11.8694 6.7143 -1.3824 21 6 13.1289 4.9961 -1.1503 22 7 14.2337 5.6488 -1.4405 23 14 13.1999 3.1746 -0.7428 24 1 13.0460 2.3821 -1.9892 25 1 14.5074 2.8587 -0.1136 26 1 12.1028 2.8348 0.1984 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9565 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 3.7600 1.3480 2.0146 35 1 3.7911 3.4464 0.7601 36 1 3.6456 3.3432 -1.0110 37 1 5.8935 2.3038 -1.1350 38 1 6.0391 2.4071 0.6360 39 1 5.4658 4.9864 -0.3606 40 1 5.9477 6.7524 -0.4915 41 1 6.7747 9.0549 -0.7023 42 1 9.1839 9.4933 -0.9358 43 1 10.7878 7.6347 -0.9618 44 1 15.0850 5.1841 -1.4432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832627106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:33 Heat of formation + Delta-G solvation = -106.441004 kcal Electronic energy + Delta-G solvation = -23990.756402 eV Core-core repulsion = 20418.373300 eV Total energy + Delta-G solvation = -3572.383102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06099 -39.36566 -38.86554 -36.08482 -34.97873 -34.82616 -32.95043 -31.85487 -31.57124 -28.84435 -27.99379 -25.53764 -24.06025 -23.41782 -22.47598 -21.98794 -21.58148 -20.03863 -18.75353 -17.59184 -17.36286 -17.16059 -17.06648 -16.86135 -16.28348 -16.01856 -15.57329 -15.39458 -15.29705 -15.09079 -14.65511 -14.46068 -14.26938 -14.13943 -13.67431 -13.59280 -13.14091 -13.07697 -13.01333 -12.74901 -12.62055 -12.49684 -12.26264 -12.18868 -11.99918 -11.63021 -11.54039 -11.48569 -11.48334 -11.29808 -10.75669 -10.59006 -10.16077 -10.05072 -9.80091 -8.68146 -8.60079 -6.31503 -0.03476 0.46854 0.99998 1.22354 1.39291 1.61869 1.97487 2.14052 2.19444 2.66344 2.77273 2.97846 3.49975 3.76895 3.82841 3.96095 4.01811 4.11030 4.20432 4.23538 4.29039 4.43800 4.55181 4.57806 4.59240 4.72079 4.76262 4.79247 4.87384 5.00132 5.05344 5.05556 5.14230 5.20014 5.29875 5.35438 5.44339 5.48643 5.49945 5.50644 5.61316 5.65883 6.05043 6.15513 6.62207 6.83332 6.92891 7.32796 8.50639 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002771 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.227776 B =10102.844502 C =11785.954261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.141 4.141 4 C 0.108 3.892 5 H 0.086 0.914 6 O -0.580 6.580 7 C -0.147 4.147 8 C 0.124 3.876 9 N -0.710 5.710 10 C 0.545 3.455 11 O -0.559 6.559 12 C -0.174 4.174 13 C -0.053 4.053 14 C -0.147 4.147 15 C -0.072 4.072 16 C -0.170 4.170 17 C -0.056 4.056 18 S 0.018 5.982 19 C -0.583 4.583 20 H 0.080 0.920 21 C 0.053 3.947 22 N -0.906 5.906 23 Si 0.904 3.096 24 H -0.261 1.261 25 H -0.251 1.251 26 H -0.238 1.238 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.387 0.613 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.415 0.585 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.147 0.853 43 H 0.112 0.888 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.670 -1.752 4.016 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.179 4.179 4 C 0.049 3.951 5 H 0.104 0.896 6 O -0.388 6.388 7 C -0.185 4.185 8 C 0.001 3.999 9 N -0.365 5.365 10 C 0.334 3.666 11 O -0.440 6.440 12 C -0.187 4.187 13 C -0.072 4.072 14 C -0.169 4.169 15 C -0.093 4.093 16 C -0.195 4.195 17 C -0.173 4.173 18 S 0.274 5.726 19 C -0.730 4.730 20 H 0.098 0.902 21 C -0.153 4.153 22 N -0.542 5.542 23 Si 0.725 3.275 24 H -0.186 1.186 25 H -0.175 1.175 26 H -0.162 1.162 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.236 0.764 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.253 0.747 40 H 0.187 0.813 41 H 0.188 0.812 42 H 0.165 0.835 43 H 0.129 0.871 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.559 -4.234 3.756 30.096 hybrid contribution 1.008 1.358 -0.004 1.691 sum -28.551 -2.877 3.753 28.940 Atomic orbital electron populations 1.21773 0.95232 1.01755 1.02126 1.21471 0.96142 0.96850 1.01793 1.22244 0.94188 0.97462 1.03992 1.21898 0.93483 0.92424 0.87304 0.89582 1.86610 1.77564 1.57993 1.16621 1.22448 0.92049 0.98738 1.05296 1.21272 0.95614 0.82113 1.00932 1.45625 1.05934 1.09953 1.74965 1.18462 0.83175 0.88514 0.76470 1.90753 1.55907 1.46228 1.51070 1.19556 0.91815 0.94015 1.13331 1.21501 0.99444 0.91223 0.95081 1.21405 0.95063 0.97502 1.02943 1.21553 0.93894 0.98652 0.95169 1.21458 1.00950 0.92094 1.05021 1.22532 0.96683 0.98164 0.99953 1.84055 0.98449 1.09502 1.80618 1.23638 0.94815 1.00637 1.53903 0.90194 1.25572 0.94167 1.02637 0.92954 1.69980 0.99087 1.38656 1.46513 0.86063 0.80466 0.80089 0.80852 1.18609 1.17451 1.16213 0.92332 0.92346 0.92934 0.92807 0.92450 0.90240 0.89858 0.76407 0.88739 0.88335 0.93507 0.93030 0.74682 0.81331 0.81156 0.83524 0.87052 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.36 5.83 30.59 0.18 -1.18 16 3 C -0.14 -1.17 4.89 30.59 0.15 -1.02 16 4 C 0.11 1.34 2.97 30.59 0.09 1.43 16 5 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 6 O -0.58 -9.27 12.41 -148.98 -1.85 -11.12 16 7 C -0.15 -1.60 5.01 30.59 0.15 -1.45 16 8 C 0.12 2.70 5.57 86.38 0.48 3.18 16 9 N -0.71 -16.63 5.51 -466.37 -2.57 -19.20 16 10 C 0.55 19.77 7.75 86.66 0.67 20.44 16 11 O -0.56 -26.12 13.77 -4.08 -0.06 -26.17 16 12 C -0.17 -6.32 5.89 -19.95 -0.12 -6.44 16 13 C -0.05 -1.27 9.53 22.51 0.21 -1.06 16 14 C -0.15 -3.35 10.02 22.27 0.22 -3.13 16 15 C -0.07 -2.18 10.03 22.29 0.22 -1.96 16 16 C -0.17 -7.28 9.22 22.40 0.21 -7.07 16 17 C -0.06 -2.58 6.14 23.04 0.14 -2.44 16 18 S 0.02 0.99 16.53 -56.49 -0.93 0.06 16 19 C -0.58 -35.58 9.54 67.96 0.65 -34.93 16 20 H 0.08 5.10 5.21 -2.91 -0.02 5.09 16 21 C 0.05 3.22 5.50 84.87 0.47 3.69 16 22 N -0.91 -56.19 13.96 21.65 0.30 -55.88 16 23 Si 0.90 46.19 27.74 68.60 1.90 48.09 16 24 H -0.26 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.25 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.24 -12.28 6.74 99.48 0.67 -11.61 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.75 7.82 -2.39 -0.02 0.73 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.39 3.37 9.05 -74.06 -0.67 2.70 16 35 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.37 7.82 -2.39 -0.02 1.35 16 39 H 0.41 6.02 6.50 -92.71 -0.60 5.41 16 40 H 0.17 2.19 6.40 -2.91 -0.02 2.18 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.11 5.51 5.04 -2.91 -0.01 5.50 16 44 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -82.21 372.37 0.96 -81.26 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.29 Total: 15.52 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.44 Total: -32.55 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.27 Total: -75.09 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.91 Total: -37.29 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -0.93 Total: 0.06 kcal Total: -82.21 0.96 -81.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832627106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.184 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds