Wall clock time and date at job start Tue Mar 31 2020 14:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46504 * 120.00070 * 2 1 4 4 C 1.52999 * 109.47016 * 269.99805 * 3 2 1 5 5 C 1.53001 * 109.47289 * 300.00164 * 4 3 2 6 6 C 1.53005 * 109.47095 * 60.00297 * 4 3 2 7 7 C 1.53007 * 109.47237 * 179.97438 * 4 3 2 8 8 O 1.42896 * 109.47029 * 180.02562 * 7 4 3 9 9 C 1.34784 * 120.00117 * 180.02562 * 2 1 3 10 10 O 1.21613 * 120.00007 * 174.75253 * 9 2 1 11 11 C 1.47426 * 119.99518 * 354.75768 * 9 2 1 12 12 C 1.39677 * 120.21466 * 315.94300 * 11 9 2 13 13 C 1.37808 * 119.93753 * 179.97438 * 12 11 9 14 14 C 1.38656 * 120.37988 * 0.02562 * 13 12 11 15 15 C 1.37905 * 120.44273 * 359.97438 * 14 13 12 16 16 C 1.39113 * 120.04910 * 359.97438 * 15 14 13 17 17 S 1.76197 * 120.19289 * 179.97438 * 16 15 14 18 18 C 1.76201 * 99.99986 * 353.63310 * 17 16 15 19 19 H 1.08000 * 119.99862 * 3.10988 * 18 17 16 20 20 C 1.38801 * 120.00252 * 183.11598 * 18 17 16 21 21 N 1.31557 * 119.99902 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00159 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46552 * 90.00448 * 22 20 18 24 24 H 1.48501 * 109.47206 * 209.99943 * 22 20 18 25 25 H 1.48497 * 109.47117 * 330.00365 * 22 20 18 26 26 H 1.09001 * 109.47368 * 270.34344 * 1 2 3 27 27 H 1.09004 * 109.47218 * 30.33954 * 1 2 3 28 28 H 1.09002 * 109.47527 * 150.34174 * 1 2 3 29 29 H 1.09000 * 109.46952 * 30.00193 * 3 2 1 30 30 H 1.09004 * 109.46928 * 150.00045 * 3 2 1 31 31 H 1.08998 * 109.47336 * 60.00292 * 5 4 3 32 32 H 1.09000 * 109.46779 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.46950 * 299.99382 * 5 4 3 34 34 H 1.09000 * 109.47146 * 59.99444 * 6 4 3 35 35 H 1.08998 * 109.47519 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.46897 * 299.99962 * 6 4 3 37 37 H 1.09000 * 109.46878 * 300.00478 * 7 4 3 38 38 H 1.08996 * 109.46851 * 59.99928 * 7 4 3 39 39 H 0.96704 * 113.99668 * 180.02562 * 8 7 4 40 40 H 1.07999 * 120.03477 * 0.26501 * 12 11 9 41 41 H 1.08000 * 119.80757 * 179.97438 * 13 12 11 42 42 H 1.08002 * 119.78144 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.98411 * 180.02562 * 15 14 13 44 44 H 0.97005 * 119.99958 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2793 0.6440 -2.1638 6 6 1.1156 1.8934 -2.1638 7 6 3.2170 3.0358 -1.4426 8 8 3.4546 3.4485 -2.7898 9 6 2.1388 -1.1672 -0.0005 10 8 3.3512 -1.1694 -0.0968 11 6 1.4063 -2.4413 0.1156 12 6 0.3738 -2.5762 1.0466 13 6 -0.3076 -3.7696 1.1499 14 6 0.0258 -4.8403 0.3344 15 6 1.0425 -4.7244 -0.5901 16 6 1.7415 -3.5277 -0.7105 17 16 3.0416 -3.3757 -1.8900 18 6 3.1316 -5.0398 -2.4623 19 1 2.4339 -5.7765 -2.0924 20 6 4.0994 -5.4039 -3.3883 21 7 4.9497 -4.5066 -3.8384 22 14 4.1953 -7.1683 -3.9944 23 1 3.3396 -7.3253 -5.1979 24 1 5.6015 -7.4970 -4.3405 25 1 3.7210 -8.0849 -2.9267 26 1 -0.3634 0.0062 1.0276 27 1 -0.3634 0.8869 -0.5191 28 1 -0.3634 -0.8930 -0.5085 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 2.7343 -0.2999 -2.1638 32 1 3.4614 0.9590 -3.1913 33 1 4.2317 0.5138 -1.6500 34 1 0.5265 2.6530 -1.6499 35 1 1.2972 2.2076 -3.1916 36 1 0.5706 0.9494 -2.1637 37 1 2.6275 3.7952 -0.9288 38 1 4.1693 2.9058 -0.9286 39 1 3.9366 4.2834 -2.8662 40 1 0.1065 -1.7445 1.6816 41 1 -1.1053 -3.8717 1.8708 42 1 -0.5143 -5.7713 0.4238 43 1 1.2957 -5.5630 -1.2219 44 1 5.6258 -4.7610 -4.4858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834053832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:59 Heat of formation + Delta-G solvation = -78.459696 kcal Electronic energy + Delta-G solvation = -25972.269618 eV Core-core repulsion = 22401.099877 eV Total energy + Delta-G solvation = -3571.169741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44165 -39.48912 -38.49678 -36.76496 -34.88172 -34.77889 -32.00857 -31.79833 -28.86477 -28.13431 -27.89045 -27.06360 -26.63294 -23.92147 -23.45060 -21.16989 -19.88771 -19.52578 -18.40707 -18.18344 -17.63237 -17.20163 -17.07853 -16.61340 -16.04665 -15.80457 -15.75107 -15.02741 -14.98333 -14.63208 -14.42648 -14.24161 -14.04575 -13.95702 -13.63461 -13.46090 -13.34640 -13.15887 -12.99665 -12.88210 -12.62475 -12.50768 -12.43571 -12.08630 -12.02836 -11.73869 -11.46615 -11.46125 -11.40235 -10.93526 -10.81158 -10.46409 -10.19318 -9.75216 -9.49029 -8.49892 -8.45729 -6.26171 0.16743 0.54390 1.24531 1.35241 1.43794 1.61919 1.84948 2.14839 2.21971 2.83840 2.98994 3.18390 3.43446 3.69723 3.87699 3.93975 4.05472 4.15904 4.25718 4.38348 4.42377 4.50076 4.59571 4.62177 4.63744 4.67458 4.80918 4.82723 4.87386 4.88716 4.96049 5.07460 5.11912 5.13929 5.19183 5.36680 5.46542 5.49113 5.50115 5.55587 5.68526 5.73559 6.08391 6.16860 6.45647 6.92690 6.99206 7.33587 8.58411 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.004839 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.235091 B = 5785.071461 C = 7690.698133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.129 3.871 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.092 3.908 8 O -0.589 6.589 9 C 0.556 3.444 10 O -0.554 6.554 11 C -0.168 4.168 12 C -0.059 4.059 13 C -0.152 4.152 14 C -0.075 4.075 15 C -0.175 4.175 16 C -0.070 4.070 17 S 0.010 5.990 18 C -0.581 4.581 19 H 0.098 0.902 20 C 0.022 3.978 21 N -0.906 5.906 22 Si 0.997 3.003 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.257 1.257 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.395 0.605 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.148 0.852 43 H 0.118 0.882 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.553 13.563 10.360 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.337 5.337 3 C 0.007 3.993 4 C -0.080 4.080 5 C -0.172 4.172 6 C -0.187 4.187 7 C 0.014 3.986 8 O -0.397 6.397 9 C 0.345 3.655 10 O -0.432 6.432 11 C -0.181 4.181 12 C -0.079 4.079 13 C -0.175 4.175 14 C -0.096 4.096 15 C -0.200 4.200 16 C -0.187 4.187 17 S 0.267 5.733 18 C -0.727 4.727 19 H 0.115 0.885 20 C -0.184 4.184 21 N -0.541 5.541 22 Si 0.817 3.183 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.181 1.181 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.244 0.756 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.166 0.834 43 H 0.135 0.865 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.194 14.020 9.510 20.873 hybrid contribution 0.517 -1.824 -0.539 1.971 sum -11.677 12.196 8.971 19.120 Atomic orbital electron populations 1.22293 0.77438 1.04036 1.03600 1.47654 1.08142 1.04586 1.73333 1.21500 0.97916 0.85060 0.94832 1.21036 0.96461 0.94296 0.96238 1.21590 0.99006 0.97799 0.98813 1.21809 0.95160 1.01526 1.00204 1.22090 0.98458 0.94637 0.83395 1.86479 1.80258 1.45706 1.27282 1.18478 0.86792 0.84548 0.75706 1.90813 1.15600 1.87340 1.49455 1.19520 1.02357 0.93438 1.02785 1.21491 0.91771 0.99287 0.95324 1.21319 1.02330 0.92300 1.01524 1.21495 0.94652 1.00114 0.93292 1.21433 0.99068 0.96967 1.02527 1.22809 0.99772 0.96651 0.99490 1.84235 1.36651 1.14316 1.38143 1.23891 1.21532 0.96555 1.30761 0.88454 1.26179 0.93354 1.03880 0.94989 1.70142 1.17714 1.36587 1.29621 0.84983 0.78125 0.76189 0.78959 1.18813 1.19903 1.18127 0.89491 0.88655 0.92036 0.85899 0.91708 0.95134 0.94734 0.95060 0.89711 0.93689 0.93430 0.90171 0.93951 0.75601 0.82384 0.81692 0.83404 0.86490 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 7.91 127.77 1.01 2.28 16 2 N -0.60 -16.75 2.40 -850.65 -2.04 -18.79 16 3 C 0.13 3.06 4.60 86.38 0.40 3.46 16 4 C -0.08 -2.09 0.68 -52.18 -0.04 -2.12 16 5 C -0.11 -4.51 6.92 71.98 0.50 -4.01 16 6 C -0.13 -3.03 7.08 71.98 0.51 -2.52 16 7 C 0.09 1.89 5.91 71.98 0.43 2.32 16 8 O -0.59 -13.36 12.31 -148.98 -1.83 -15.20 16 9 C 0.56 21.78 5.39 86.66 0.47 22.25 16 10 O -0.55 -26.98 12.79 -4.07 -0.05 -27.03 16 11 C -0.17 -6.57 4.87 -19.95 -0.10 -6.66 16 12 C -0.06 -1.63 7.87 22.52 0.18 -1.45 16 13 C -0.15 -3.76 10.02 22.27 0.22 -3.53 16 14 C -0.08 -2.28 10.02 22.29 0.22 -2.06 16 15 C -0.17 -7.34 9.25 22.40 0.21 -7.13 16 16 C -0.07 -3.32 6.14 23.04 0.14 -3.18 16 17 S 0.01 0.58 19.52 -56.49 -1.10 -0.52 16 18 C -0.58 -34.36 9.08 67.95 0.62 -33.75 16 19 H 0.10 5.42 4.83 -2.91 -0.01 5.41 16 20 C 0.02 1.25 5.49 84.87 0.47 1.72 16 21 N -0.91 -56.44 13.22 21.64 0.29 -56.15 16 22 Si 1.00 44.59 29.55 68.60 2.03 46.62 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.09 1.05 7.03 -2.39 -0.02 1.04 16 27 H 0.10 1.33 6.03 -2.39 -0.01 1.32 16 28 H 0.06 1.38 6.38 -2.39 -0.02 1.37 16 29 H 0.12 1.71 8.07 -2.39 -0.02 1.69 16 30 H 0.06 1.81 7.50 -2.38 -0.02 1.79 16 31 H 0.03 1.38 6.06 -2.39 -0.01 1.37 16 32 H 0.03 1.40 7.68 -2.39 -0.02 1.38 16 33 H 0.03 1.34 7.63 -2.39 -0.02 1.33 16 34 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 35 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 36 H 0.05 1.22 5.98 -2.39 -0.01 1.20 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 39 H 0.39 4.89 9.12 -74.05 -0.68 4.22 16 40 H 0.16 3.05 6.29 -2.91 -0.02 3.03 16 41 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.12 5.33 4.95 -2.91 -0.01 5.31 16 44 H 0.28 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -84.36 356.38 2.87 -81.49 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.36 Total: 24.00 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 5.23 Total: -34.40 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.75 Total: -74.94 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.89 Total: -42.23 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -1.10 Total: -0.52 kcal Total: -84.36 2.87 -81.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834053832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.026 kcal (2) G-P(sol) polarization free energy of solvation -84.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds