Wall clock time and date at job start Tue Mar 31 2020 14:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 C 1.52998 * 109.46882 * 60.00323 * 3 2 1 5 5 C 1.52997 * 109.47121 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47249 * 185.00099 * 5 3 2 7 7 C 1.34777 * 120.00291 * 179.97438 * 6 5 3 8 8 O 1.21607 * 119.99695 * 0.02562 * 7 6 5 9 9 C 1.47425 * 119.99899 * 179.97438 * 7 6 5 10 10 C 1.39675 * 120.21466 * 0.02562 * 9 7 6 11 11 C 1.37813 * 119.93499 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.38085 * 0.02562 * 11 10 9 13 13 C 1.37909 * 120.44095 * 359.97438 * 12 11 10 14 14 C 1.39110 * 120.04638 * 359.74460 * 13 12 11 15 15 S 1.76206 * 120.18911 * 180.25214 * 14 13 12 16 16 C 1.76200 * 99.99734 * 6.86815 * 15 14 13 17 17 H 1.08002 * 120.00138 * 5.66006 * 16 15 14 18 18 C 1.38803 * 120.00247 * 185.65691 * 16 15 14 19 19 N 1.31557 * 119.99724 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00493 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46724 * 60.00008 * 20 18 16 22 22 H 1.48500 * 109.47362 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46877 * 299.99980 * 20 18 16 24 24 O 1.42905 * 109.46794 * 300.00483 * 3 2 1 25 25 C 1.42897 * 113.99821 * 299.99497 * 24 3 2 26 26 H 1.09008 * 109.46921 * 299.99511 * 1 2 3 27 27 H 1.08992 * 109.47575 * 59.99826 * 1 2 3 28 28 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46567 * 239.99957 * 2 1 3 30 30 H 1.08995 * 109.47244 * 120.00572 * 2 1 3 31 31 H 1.09002 * 109.47077 * 299.99961 * 4 3 2 32 32 H 1.08992 * 109.47137 * 60.00221 * 4 3 2 33 33 H 1.09004 * 109.46660 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.47000 * 305.00172 * 5 3 2 35 35 H 1.09003 * 109.46961 * 64.99758 * 5 3 2 36 36 H 0.97003 * 119.99662 * 359.97438 * 6 5 3 37 37 H 1.07992 * 120.03125 * 359.94986 * 10 9 7 38 38 H 1.08002 * 119.80728 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.77897 * 179.97438 * 12 11 10 40 40 H 1.07996 * 119.97582 * 180.02562 * 13 12 11 41 41 H 0.97000 * 120.00011 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.47048 * 60.01047 * 25 24 3 43 43 H 1.09009 * 109.47054 * 180.02562 * 25 24 3 44 44 H 1.08994 * 109.47701 * 300.00364 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 3.5700 1.4425 -0.0006 6 7 4.0584 2.8185 0.1198 7 6 5.3835 3.0638 0.1412 8 8 6.1736 2.1430 0.0602 9 6 5.8748 4.4485 0.2618 10 6 4.9712 5.5095 0.3547 11 6 5.4369 6.8016 0.4677 12 6 6.7996 7.0565 0.4895 13 6 7.7057 6.0207 0.3989 14 6 7.2555 4.7090 0.2900 15 16 8.4099 3.3822 0.1806 16 6 9.9118 4.2595 0.4622 17 1 9.8844 5.3070 0.7241 18 6 11.1302 3.6045 0.3476 19 7 11.1635 2.3285 0.0292 20 14 12.7225 4.5347 0.6454 21 1 12.7316 5.0694 2.0308 22 1 13.8744 3.6155 0.4626 23 1 12.8272 5.6584 -0.3197 24 8 1.5635 2.1161 -1.1668 25 6 1.9852 1.5199 -2.3950 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6499 2.1392 33 1 1.8930 3.1915 1.2490 34 1 3.9337 0.8529 0.8410 35 1 3.9329 1.0083 -0.9323 36 1 3.4280 3.5530 0.1840 37 1 3.9086 5.3174 0.3375 38 1 4.7363 7.6204 0.5390 39 1 7.1539 8.0729 0.5780 40 1 8.7655 6.2278 0.4170 41 1 12.0149 1.8706 -0.0505 42 1 1.6207 0.4938 -2.4448 43 1 1.5827 2.0897 -3.2326 44 1 3.0740 1.5215 -2.4448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836824985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:28 Heat of formation + Delta-G solvation = -58.559324 kcal Electronic energy + Delta-G solvation = -25121.782268 eV Core-core repulsion = 21551.475472 eV Total energy + Delta-G solvation = -3570.306797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08091 -38.93001 -37.33186 -34.60885 -33.57303 -32.74160 -30.88515 -30.25017 -29.71608 -27.42056 -26.23910 -25.81136 -24.07163 -22.55359 -21.83765 -20.14797 -19.91201 -18.27755 -17.27546 -16.60269 -15.98148 -15.87345 -15.53609 -15.20971 -15.04282 -14.85168 -14.26834 -14.13174 -13.86005 -13.66675 -13.44536 -12.98390 -12.83051 -12.65583 -12.59891 -12.36923 -12.12202 -11.95490 -11.73137 -11.57569 -11.55535 -11.20162 -11.17589 -11.13066 -10.93566 -10.53538 -10.32306 -9.83067 -9.73512 -9.56590 -9.47297 -8.75158 -8.70360 -8.30751 -8.05131 -6.51934 -6.44864 -4.15403 1.55700 2.04131 3.11449 3.14583 3.18657 3.37402 3.44757 3.54866 3.73087 4.07785 4.45414 4.51232 4.58064 4.64717 4.95968 5.03096 5.13997 5.15420 5.24637 5.25805 5.33292 5.39576 5.41525 5.48191 5.57298 5.62235 5.62663 5.69744 5.75182 5.75590 5.84437 5.98577 6.01078 6.12144 6.14041 6.40887 6.61653 6.76319 6.87851 7.04112 7.05439 7.15222 7.45924 7.60993 7.94738 8.17024 8.82101 9.01159 10.58366 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003228 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.624249 B = 8672.661824 C = 9721.517959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.103 3.897 4 C -0.140 4.140 5 C 0.098 3.902 6 N -0.731 5.731 7 C 0.551 3.449 8 O -0.512 6.512 9 C -0.177 4.177 10 C -0.060 4.060 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.056 4.056 15 S 0.183 5.817 16 C -0.596 4.596 17 H 0.090 0.910 18 C 0.084 3.916 19 N -0.859 5.859 20 Si 0.919 3.081 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.270 1.270 24 O -0.373 6.373 25 C 0.022 3.978 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.275 0.725 42 H 0.044 0.956 43 H 0.084 0.916 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.715 -0.034 -0.291 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.064 3.936 4 C -0.198 4.198 5 C -0.026 4.026 6 N -0.387 5.387 7 C 0.340 3.660 8 O -0.389 6.389 9 C -0.192 4.192 10 C -0.080 4.080 11 C -0.211 4.211 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.176 4.176 15 S 0.448 5.552 16 C -0.743 4.743 17 H 0.108 0.892 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.744 3.256 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.195 1.195 24 O -0.292 6.292 25 C -0.074 4.074 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.949 -2.202 -0.606 19.086 hybrid contribution 1.042 2.086 0.297 2.350 sum -17.908 -0.116 -0.309 17.911 Atomic orbital electron populations 1.21725 0.94775 1.01397 1.02579 1.22051 0.97320 0.95956 1.03260 1.21791 0.91869 0.92761 0.87214 1.21809 1.02032 1.00970 0.94940 1.21825 0.93017 0.84924 1.02869 1.45764 1.07120 1.08213 1.77561 1.18330 0.81649 0.89119 0.76864 1.90778 1.54109 1.45450 1.48566 1.19106 0.92583 0.92098 1.15404 1.20904 0.97401 0.92621 0.97111 1.20637 0.95350 0.95948 1.09181 1.21085 0.93297 0.98253 0.97258 1.21431 1.00777 0.91466 1.04219 1.23085 0.97177 1.00385 0.96964 1.84753 0.92880 1.03372 1.74228 1.24022 0.94278 1.00980 1.54995 0.89217 1.25092 0.99462 0.94950 0.93221 1.69969 1.27686 1.08922 1.42554 0.86209 0.80527 0.79536 0.79346 1.19483 1.20565 1.19494 1.87948 1.74122 1.53914 1.13249 1.22824 1.00002 0.98209 0.86383 0.92256 0.92148 0.92864 0.91228 0.90537 0.91232 0.90719 0.91727 0.90724 0.91251 0.76591 0.87192 0.87067 0.87026 0.84397 0.91501 0.93797 0.89734 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.41 37.16 0.35 -0.73 16 2 C -0.15 -1.23 4.61 -26.73 -0.12 -1.35 16 3 C 0.10 1.02 0.48 -90.62 -0.04 0.98 16 4 C -0.14 -1.23 8.26 37.16 0.31 -0.92 16 5 C 0.10 1.26 4.39 -4.04 -0.02 1.24 16 6 N -0.73 -10.76 5.14 -61.38 -0.32 -11.07 16 7 C 0.55 10.84 7.75 -12.52 -0.10 10.75 16 8 O -0.51 -12.06 13.77 5.27 0.07 -11.99 16 9 C -0.18 -3.55 5.89 -104.76 -0.62 -4.17 16 10 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 11 C -0.19 -2.92 10.02 -39.58 -0.40 -3.32 16 12 C -0.08 -1.33 10.03 -39.55 -0.40 -1.72 16 13 C -0.15 -3.25 9.22 -39.38 -0.36 -3.61 16 14 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 15 S 0.18 4.96 18.56 -107.50 -2.00 2.96 16 16 C -0.60 -16.54 9.00 30.94 0.28 -16.27 16 17 H 0.09 2.36 4.98 -52.49 -0.26 2.09 16 18 C 0.08 2.31 5.49 -17.46 -0.10 2.21 16 19 N -0.86 -24.87 13.22 55.49 0.73 -24.13 16 20 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 O -0.37 -4.00 9.62 -35.23 -0.34 -4.34 16 25 C 0.02 0.21 10.21 101.05 1.03 1.24 16 26 H 0.06 0.41 6.43 -51.92 -0.33 0.07 16 27 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.96 6.28 -51.93 -0.33 0.63 16 36 H 0.40 5.02 5.02 -40.82 -0.20 4.81 16 37 H 0.11 1.40 6.40 -52.49 -0.34 1.06 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.14 3.03 5.03 -52.49 -0.26 2.76 16 41 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.04 0.36 6.42 -51.93 -0.33 0.02 16 43 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.05 0.53 6.31 -51.93 -0.33 0.21 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -32.03 360.88 -8.12 -40.15 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.90 Total: 5.80 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.79 Total: -18.56 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.42 Total: -35.20 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.27 Total: -16.33 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.00 Total: 2.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.03 -8.12 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836824985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.411 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds