Wall clock time and date at job start Tue Mar 31 2020 14:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 C 1.52998 * 109.46882 * 60.00323 * 3 2 1 5 5 C 1.52997 * 109.47121 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47249 * 185.00099 * 5 3 2 7 7 C 1.34777 * 120.00291 * 179.97438 * 6 5 3 8 8 O 1.21607 * 119.99695 * 0.02562 * 7 6 5 9 9 C 1.47425 * 119.99899 * 179.97438 * 7 6 5 10 10 C 1.39675 * 120.21466 * 0.02562 * 9 7 6 11 11 C 1.37813 * 119.93499 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.38085 * 0.02562 * 11 10 9 13 13 C 1.37909 * 120.44095 * 359.97438 * 12 11 10 14 14 C 1.39110 * 120.04638 * 359.74460 * 13 12 11 15 15 S 1.76206 * 120.18911 * 180.25214 * 14 13 12 16 16 C 1.76200 * 99.99734 * 6.86815 * 15 14 13 17 17 H 1.08002 * 120.00138 * 5.66006 * 16 15 14 18 18 C 1.38803 * 120.00247 * 185.65691 * 16 15 14 19 19 N 1.31557 * 119.99724 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00493 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46724 * 60.00008 * 20 18 16 22 22 H 1.48500 * 109.47362 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46877 * 299.99980 * 20 18 16 24 24 O 1.42905 * 109.46794 * 300.00483 * 3 2 1 25 25 C 1.42897 * 113.99821 * 299.99497 * 24 3 2 26 26 H 1.09008 * 109.46921 * 299.99511 * 1 2 3 27 27 H 1.08992 * 109.47575 * 59.99826 * 1 2 3 28 28 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46567 * 239.99957 * 2 1 3 30 30 H 1.08995 * 109.47244 * 120.00572 * 2 1 3 31 31 H 1.09002 * 109.47077 * 299.99961 * 4 3 2 32 32 H 1.08992 * 109.47137 * 60.00221 * 4 3 2 33 33 H 1.09004 * 109.46660 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.47000 * 305.00172 * 5 3 2 35 35 H 1.09003 * 109.46961 * 64.99758 * 5 3 2 36 36 H 0.97003 * 119.99662 * 359.97438 * 6 5 3 37 37 H 1.07992 * 120.03125 * 359.94986 * 10 9 7 38 38 H 1.08002 * 119.80728 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.77897 * 179.97438 * 12 11 10 40 40 H 1.07996 * 119.97582 * 180.02562 * 13 12 11 41 41 H 0.97000 * 120.00011 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.47048 * 60.01047 * 25 24 3 43 43 H 1.09009 * 109.47054 * 180.02562 * 25 24 3 44 44 H 1.08994 * 109.47701 * 300.00364 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 3.5700 1.4425 -0.0006 6 7 4.0584 2.8185 0.1198 7 6 5.3835 3.0638 0.1412 8 8 6.1736 2.1430 0.0602 9 6 5.8748 4.4485 0.2618 10 6 4.9712 5.5095 0.3547 11 6 5.4369 6.8016 0.4677 12 6 6.7996 7.0565 0.4895 13 6 7.7057 6.0207 0.3989 14 6 7.2555 4.7090 0.2900 15 16 8.4099 3.3822 0.1806 16 6 9.9118 4.2595 0.4622 17 1 9.8844 5.3070 0.7241 18 6 11.1302 3.6045 0.3476 19 7 11.1635 2.3285 0.0292 20 14 12.7225 4.5347 0.6454 21 1 12.7316 5.0694 2.0308 22 1 13.8744 3.6155 0.4626 23 1 12.8272 5.6584 -0.3197 24 8 1.5635 2.1161 -1.1668 25 6 1.9852 1.5199 -2.3950 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6499 2.1392 33 1 1.8930 3.1915 1.2490 34 1 3.9337 0.8529 0.8410 35 1 3.9329 1.0083 -0.9323 36 1 3.4280 3.5530 0.1840 37 1 3.9086 5.3174 0.3375 38 1 4.7363 7.6204 0.5390 39 1 7.1539 8.0729 0.5780 40 1 8.7655 6.2278 0.4170 41 1 12.0149 1.8706 -0.0505 42 1 1.6207 0.4938 -2.4448 43 1 1.5827 2.0897 -3.2326 44 1 3.0740 1.5215 -2.4448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836824985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:27 Heat of formation + Delta-G solvation = -79.679364 kcal Electronic energy + Delta-G solvation = -25122.698102 eV Core-core repulsion = 21551.475472 eV Total energy + Delta-G solvation = -3571.222630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28765 -40.13380 -38.84141 -35.76194 -34.76658 -34.53332 -32.28015 -31.78648 -30.58526 -28.41931 -27.83912 -27.01064 -25.18010 -23.80417 -23.28571 -21.56781 -20.87401 -19.94445 -18.87224 -17.52292 -17.44680 -17.08306 -17.02154 -16.43807 -16.28022 -16.07780 -15.59549 -15.45248 -15.31522 -15.11217 -14.68736 -14.32385 -14.15745 -13.79214 -13.39310 -13.32513 -13.29137 -13.07875 -12.96963 -12.89492 -12.77946 -12.61353 -12.56125 -12.30815 -12.06356 -11.78449 -11.51101 -11.40628 -11.30061 -11.29252 -10.50958 -10.41727 -10.14789 -9.91836 -9.76375 -8.46904 -8.45099 -6.24421 0.03259 0.53512 1.26264 1.37728 1.43590 1.64152 2.01502 2.14214 2.25979 2.83523 2.87662 3.04162 3.24719 3.57237 3.80714 3.88233 3.95026 4.01608 4.26798 4.30223 4.44501 4.48356 4.52626 4.58108 4.61478 4.66556 4.72200 4.77165 4.84288 4.85983 4.95173 5.03887 5.08796 5.11370 5.13753 5.35847 5.36133 5.44121 5.47004 5.50889 5.57080 5.67117 6.09584 6.16028 6.22491 6.61419 6.95737 7.34875 8.60228 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003228 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.624249 B = 8672.661824 C = 9721.517959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.111 3.889 4 C -0.141 4.141 5 C 0.095 3.905 6 N -0.706 5.706 7 C 0.545 3.455 8 O -0.558 6.558 9 C -0.182 4.182 10 C -0.054 4.054 11 C -0.157 4.157 12 C -0.069 4.069 13 C -0.175 4.175 14 C -0.072 4.072 15 S 0.064 5.936 16 C -0.603 4.603 17 H 0.094 0.906 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.993 3.007 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.260 1.260 24 O -0.379 6.379 25 C 0.020 3.980 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.120 0.880 41 H 0.276 0.724 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.157 3.108 0.303 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C 0.071 3.929 4 C -0.198 4.198 5 C -0.030 4.030 6 N -0.361 5.361 7 C 0.334 3.666 8 O -0.438 6.438 9 C -0.196 4.196 10 C -0.074 4.074 11 C -0.180 4.180 12 C -0.090 4.090 13 C -0.200 4.200 14 C -0.190 4.190 15 S 0.323 5.677 16 C -0.750 4.750 17 H 0.112 0.888 18 C -0.181 4.181 19 N -0.540 5.540 20 Si 0.814 3.186 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.184 1.184 24 O -0.298 6.298 25 C -0.076 4.076 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.250 0.750 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -22.519 1.018 -0.006 22.542 hybrid contribution 1.698 1.287 0.105 2.133 sum -20.821 2.305 0.098 20.949 Atomic orbital electron populations 1.21696 0.93512 1.02120 1.02680 1.22062 0.98295 0.94746 1.03481 1.21792 0.89210 0.94150 0.87736 1.21859 1.03047 1.00701 0.94240 1.21999 0.95555 0.83509 1.01889 1.45569 1.05535 1.09656 1.75347 1.18528 0.82858 0.88750 0.76511 1.90778 1.55675 1.46680 1.50691 1.19482 0.92105 0.93657 1.14315 1.21409 0.98974 0.91790 0.95233 1.21322 0.95382 0.97016 1.04233 1.21545 0.93606 0.98850 0.94954 1.21460 1.00970 0.91848 1.05754 1.22987 0.97347 0.99547 0.99113 1.84924 0.95533 1.07635 1.79643 1.24222 0.94584 1.01016 1.55154 0.88791 1.26151 1.03160 0.95834 0.92975 1.70127 1.28382 1.10782 1.44749 0.85088 0.75752 0.78211 0.79560 1.18604 1.19860 1.18435 1.87936 1.73933 1.54378 1.13596 1.22892 0.98818 0.99387 0.86506 0.91523 0.92598 0.91912 0.91490 0.90029 0.89691 0.90201 0.91773 0.91474 0.92612 0.74969 0.82678 0.81646 0.83163 0.86260 0.91514 0.92462 0.88345 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.41 71.98 0.68 -1.05 16 2 C -0.15 -2.21 4.61 30.60 0.14 -2.07 16 3 C 0.11 2.00 0.48 -10.79 -0.01 1.99 16 4 C -0.14 -2.07 8.26 71.98 0.59 -1.48 16 5 C 0.09 2.42 4.39 86.38 0.38 2.80 16 6 N -0.71 -20.12 5.14 -466.36 -2.40 -22.52 16 7 C 0.54 21.86 7.75 86.66 0.67 22.53 16 8 O -0.56 -28.14 13.77 -4.05 -0.06 -28.19 16 9 C -0.18 -7.22 5.89 -19.95 -0.12 -7.33 16 10 C -0.05 -1.52 9.53 22.52 0.21 -1.31 16 11 C -0.16 -3.95 10.02 22.27 0.22 -3.72 16 12 C -0.07 -2.09 10.03 22.29 0.22 -1.87 16 13 C -0.18 -7.37 9.22 22.40 0.21 -7.17 16 14 C -0.07 -3.43 6.14 23.04 0.14 -3.29 16 15 S 0.06 3.75 18.56 -56.49 -1.05 2.70 16 16 C -0.60 -35.63 9.00 67.96 0.61 -35.02 16 17 H 0.09 5.22 4.98 -2.91 -0.01 5.20 16 18 C 0.02 1.41 5.49 84.87 0.47 1.88 16 19 N -0.91 -55.99 13.22 21.65 0.29 -55.71 16 20 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 O -0.38 -7.30 9.62 -148.98 -1.43 -8.73 16 25 C 0.02 0.36 10.21 113.37 1.16 1.51 16 26 H 0.07 0.71 6.43 -2.38 -0.02 0.70 16 27 H 0.05 0.74 7.68 -2.39 -0.02 0.72 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 1.04 6.54 -2.39 -0.02 1.02 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.02 6.43 -2.39 -0.02 1.00 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 0.93 6.58 -2.38 -0.02 0.92 16 34 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.61 6.28 -2.39 -0.01 1.59 16 36 H 0.41 9.17 5.02 -92.71 -0.47 8.71 16 37 H 0.16 2.97 6.40 -2.91 -0.02 2.95 16 38 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.12 5.41 5.03 -2.91 -0.01 5.40 16 41 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.06 0.86 6.42 -2.39 -0.02 0.84 16 43 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.03 0.63 6.31 -2.39 -0.02 0.61 16 Total: -1.00 -78.25 360.88 3.53 -74.72 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.57 Total: 25.05 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 5.59 Total: -33.59 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.11 Total: -78.22 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.49 Total: -36.92 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.05 Total: 2.70 kcal Total: -78.25 3.53 -74.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836824985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.963 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds