Wall clock time and date at job start Tue Mar 31 2020 14:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46876 * 2 1 4 4 C 1.53005 * 109.46784 * 64.96232 * 3 2 1 5 5 C 1.52993 * 109.47485 * 304.96305 * 3 2 1 6 6 N 1.46501 * 109.47272 * 302.55650 * 5 3 2 7 7 C 1.34771 * 120.00336 * 174.88879 * 6 5 3 8 8 O 1.21610 * 119.99942 * 359.97438 * 7 6 5 9 9 C 1.47430 * 120.00202 * 179.97438 * 7 6 5 10 10 C 1.39679 * 120.21338 * 359.97438 * 9 7 6 11 11 C 1.37807 * 119.93712 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.37996 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.44054 * 359.97438 * 12 11 10 14 14 C 1.39109 * 120.04872 * 359.71181 * 13 12 11 15 15 S 1.76199 * 120.19112 * 180.27940 * 14 13 12 16 16 C 1.76204 * 100.00017 * 7.11789 * 15 14 13 17 17 H 1.08003 * 119.99676 * 5.45681 * 16 15 14 18 18 C 1.38800 * 120.00218 * 185.45619 * 16 15 14 19 19 N 1.31551 * 120.00071 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00085 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47105 * 89.99957 * 20 18 16 22 22 H 1.48500 * 109.47259 * 210.00192 * 20 18 16 23 23 H 1.48499 * 109.46972 * 330.00176 * 20 18 16 24 24 O 1.42894 * 109.47024 * 184.95898 * 3 2 1 25 25 C 1.42905 * 114.00436 * 300.00364 * 24 3 2 26 26 H 1.09001 * 109.47712 * 55.13951 * 1 2 3 27 27 H 1.09001 * 109.47416 * 175.13903 * 1 2 3 28 28 H 1.09005 * 109.47427 * 295.13870 * 1 2 3 29 29 H 1.08999 * 109.47326 * 120.00254 * 2 1 3 30 30 H 1.09003 * 109.46600 * 240.00530 * 2 1 3 31 31 H 1.09006 * 109.47098 * 59.99861 * 4 3 2 32 32 H 1.09000 * 109.46973 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47154 * 299.99994 * 4 3 2 34 34 H 1.08998 * 109.47493 * 62.55535 * 5 3 2 35 35 H 1.08997 * 109.47393 * 182.55214 * 5 3 2 36 36 H 0.97007 * 119.99659 * 354.88579 * 6 5 3 37 37 H 1.08004 * 120.03002 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.80345 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.77734 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.97208 * 180.02562 * 13 12 11 41 41 H 0.97003 * 119.99954 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.47051 * 59.99647 * 25 24 3 43 43 H 1.08999 * 109.47531 * 179.97438 * 25 24 3 44 44 H 1.08996 * 109.46907 * 300.00316 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6343 2.1268 1.3070 5 6 1.4306 2.1989 -1.1821 6 7 1.7682 1.5090 -2.4296 7 6 1.2512 1.9378 -3.5980 8 8 0.5040 2.8971 -3.6167 9 6 1.5914 1.2439 -4.8535 10 6 2.4495 0.1419 -4.8373 11 6 2.7641 -0.5022 -6.0143 12 6 2.2337 -0.0625 -7.2177 13 6 1.3849 1.0238 -7.2518 14 6 1.0501 1.6834 -6.0737 15 16 -0.0399 3.0673 -6.1120 16 6 -0.5374 3.0182 -7.8016 17 1 -0.2194 2.2030 -8.4347 18 6 -1.3380 4.0272 -8.3190 19 7 -1.7090 3.9908 -9.5806 20 14 -1.8874 5.4375 -7.2243 21 1 -0.8892 6.5350 -7.2925 22 1 -3.2064 5.9386 -7.6871 23 1 -2.0032 4.9602 -5.8229 24 8 3.4641 1.4443 -0.1165 25 6 4.1349 0.7599 0.9436 26 1 -0.3634 0.5874 -0.8432 27 1 -0.3634 -1.0240 -0.0871 28 1 -0.3634 0.4366 0.9304 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 2.0684 1.5879 2.1492 32 1 1.9979 3.1543 1.3072 33 1 0.5479 2.1254 1.3959 34 1 0.3471 2.2369 -1.0697 35 1 1.8288 3.2132 -1.2086 36 1 2.3639 0.7436 -2.4147 37 1 2.8668 -0.2046 -3.9033 38 1 3.4275 -1.3543 -5.9992 39 1 2.4871 -0.5743 -8.1344 40 1 0.9759 1.3596 -8.1932 41 1 -2.2681 4.6961 -9.9423 42 1 3.8150 -0.2820 0.9632 43 1 5.2118 0.8059 0.7818 44 1 3.8894 1.2331 1.8943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836824986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:30 Heat of formation + Delta-G solvation = -78.563748 kcal Electronic energy + Delta-G solvation = -25285.760926 eV Core-core repulsion = 21714.586672 eV Total energy + Delta-G solvation = -3571.174253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29413 -40.14349 -38.90782 -36.13875 -34.81613 -34.35926 -32.18366 -31.85495 -30.57903 -28.31062 -27.98036 -26.82418 -25.19679 -24.39815 -23.44392 -21.61362 -20.52012 -19.91503 -18.81109 -17.84300 -17.54704 -17.14932 -17.07659 -16.37022 -16.20235 -15.97460 -15.59061 -15.46949 -15.26194 -15.17770 -14.97944 -14.50094 -14.10317 -13.81070 -13.66630 -13.32915 -13.28432 -13.11575 -13.08078 -13.04020 -12.87674 -12.77528 -12.49308 -12.26985 -12.17135 -11.76870 -11.55475 -11.44935 -11.34723 -11.25265 -10.58401 -10.44345 -10.14851 -10.04447 -9.79829 -8.66889 -8.59318 -6.30274 -0.03094 0.46699 1.00437 1.23399 1.40689 1.63490 1.98062 2.15207 2.20153 2.68080 2.76897 2.78765 2.98450 3.61321 3.75538 3.89330 3.93292 4.00118 4.23281 4.34232 4.45125 4.53322 4.56440 4.57861 4.58789 4.59140 4.71037 4.72134 4.79879 4.85814 4.94730 5.03050 5.05956 5.06064 5.14355 5.29959 5.35262 5.44580 5.47749 5.49626 5.61022 5.66868 6.04703 6.16667 6.28915 6.60187 6.84672 7.31282 8.51950 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.003714 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.644122 B = 7537.901753 C = 8771.108298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.142 4.142 3 C 0.110 3.890 4 C -0.176 4.176 5 C 0.133 3.867 6 N -0.704 5.704 7 C 0.548 3.452 8 O -0.557 6.557 9 C -0.173 4.173 10 C -0.055 4.055 11 C -0.147 4.147 12 C -0.071 4.071 13 C -0.169 4.169 14 C -0.054 4.054 15 S 0.023 5.977 16 C -0.586 4.586 17 H 0.080 0.920 18 C 0.054 3.946 19 N -0.907 5.907 20 Si 0.906 3.094 21 H -0.259 1.259 22 H -0.252 1.252 23 H -0.240 1.240 24 O -0.397 6.397 25 C 0.019 3.981 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.148 0.852 40 H 0.113 0.887 41 H 0.279 0.721 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.828 -12.151 23.695 29.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.070 3.930 4 C -0.234 4.234 5 C 0.009 3.991 6 N -0.357 5.357 7 C 0.337 3.663 8 O -0.437 6.437 9 C -0.186 4.186 10 C -0.075 4.075 11 C -0.169 4.169 12 C -0.092 4.092 13 C -0.194 4.194 14 C -0.172 4.172 15 S 0.279 5.721 16 C -0.732 4.732 17 H 0.098 0.902 18 C -0.152 4.152 19 N -0.544 5.544 20 Si 0.727 3.273 21 H -0.183 1.183 22 H -0.175 1.175 23 H -0.164 1.164 24 O -0.317 6.317 25 C -0.077 4.077 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.250 0.750 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.166 0.834 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.756 -10.282 24.204 28.412 hybrid contribution -0.114 -0.301 -1.378 1.416 sum 10.642 -10.583 22.825 27.318 Atomic orbital electron populations 1.21868 0.94919 1.02423 1.02110 1.22087 0.96947 0.95343 1.03606 1.21687 0.81400 0.95549 0.94329 1.22378 1.03357 1.01347 0.96278 1.21438 1.00107 0.95672 0.81871 1.45526 1.50123 1.34858 1.05233 1.18387 0.80097 0.83404 0.84406 1.90738 1.37631 1.28980 1.86388 1.19532 1.06273 1.01817 0.90938 1.21442 0.93882 0.91940 1.00197 1.21374 1.02414 1.02104 0.91001 1.21539 0.93765 0.93751 1.00134 1.21463 1.01831 0.98995 0.97129 1.22520 0.98958 0.99628 0.96051 1.84032 1.46864 1.31795 1.09430 1.23656 1.37554 1.13601 0.98384 0.90242 1.25567 0.94220 0.99553 0.95896 1.69985 1.35170 1.35024 1.14206 0.86035 0.79822 0.80354 0.81081 1.18297 1.17550 1.16416 1.87989 1.17787 1.77230 1.48713 1.22986 0.97865 0.96614 0.90249 0.93959 0.91755 0.91245 0.89284 0.91177 0.89783 0.92060 0.90276 0.90053 0.92839 0.74988 0.82222 0.81334 0.83440 0.86917 0.91115 0.92420 0.88982 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.21 71.98 0.66 -1.60 16 2 C -0.14 -1.82 4.33 30.59 0.13 -1.69 16 3 C 0.11 1.77 0.56 -10.79 -0.01 1.76 16 4 C -0.18 -2.23 8.01 71.98 0.58 -1.66 16 5 C 0.13 3.17 4.26 86.38 0.37 3.54 16 6 N -0.70 -18.61 5.08 -466.38 -2.37 -20.98 16 7 C 0.55 20.48 7.75 86.67 0.67 21.15 16 8 O -0.56 -25.82 13.77 -4.06 -0.06 -25.88 16 9 C -0.17 -6.50 5.89 -19.95 -0.12 -6.62 16 10 C -0.05 -1.45 9.53 22.52 0.21 -1.24 16 11 C -0.15 -3.60 10.02 22.27 0.22 -3.37 16 12 C -0.07 -2.23 10.03 22.29 0.22 -2.00 16 13 C -0.17 -7.33 9.22 22.40 0.21 -7.12 16 14 C -0.05 -2.53 6.14 23.04 0.14 -2.39 16 15 S 0.02 1.28 16.53 -56.49 -0.93 0.34 16 16 C -0.59 -35.68 9.54 67.95 0.65 -35.03 16 17 H 0.08 5.08 5.21 -2.91 -0.02 5.06 16 18 C 0.05 3.26 5.50 84.87 0.47 3.73 16 19 N -0.91 -56.27 13.96 21.64 0.30 -55.96 16 20 Si 0.91 45.94 27.74 68.60 1.90 47.85 16 21 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.25 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.24 -12.32 6.74 99.48 0.67 -11.65 16 24 O -0.40 -6.89 10.14 -148.98 -1.51 -8.40 16 25 C 0.02 0.19 10.21 113.37 1.16 1.35 16 26 H 0.04 0.83 6.12 -2.39 -0.01 0.82 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.83 6.81 -2.38 -0.02 0.81 16 29 H 0.09 0.79 6.82 -2.39 -0.02 0.78 16 30 H 0.07 0.92 6.97 -2.39 -0.02 0.91 16 31 H 0.08 0.75 6.54 -2.38 -0.02 0.73 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.93 6.67 -2.39 -0.02 0.91 16 34 H 0.08 2.05 6.38 -2.39 -0.02 2.04 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.41 8.44 5.28 -92.70 -0.49 7.95 16 37 H 0.16 2.75 6.40 -2.91 -0.02 2.73 16 38 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.11 5.61 5.04 -2.91 -0.01 5.60 16 41 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.06 0.43 6.53 -2.38 -0.02 0.41 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.44 6.42 -2.39 -0.02 0.43 16 Total: -1.00 -78.02 356.59 3.41 -74.60 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.51 Total: 19.62 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 5.57 Total: -31.19 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.07 Total: -76.95 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.57 Total: -34.27 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.85 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -0.93 Total: 0.34 kcal Total: -78.02 3.41 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836824986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.959 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds