Wall clock time and date at job start Tue Mar 31 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47246 * 240.00191 * 2 1 3 5 5 C 1.50704 * 109.47118 * 119.99920 * 2 1 3 6 6 O 1.21683 * 119.99956 * 0.02562 * 5 2 1 7 7 C 1.39054 * 119.99827 * 180.02562 * 5 2 1 8 8 C 1.38155 * 120.00308 * 179.97438 * 7 5 2 9 9 S 1.77256 * 126.25438 * 0.12195 * 8 7 5 10 10 C 1.82388 * 94.45193 * 180.19852 * 9 8 7 11 11 C 1.51135 * 103.45419 * 359.82379 * 10 9 8 12 12 O 1.21249 * 122.91398 * 180.02562 * 11 10 9 13 13 N 1.32211 * 114.16969 * 0.02562 * 11 10 9 14 14 C 1.46504 * 119.78066 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46850 * 90.47960 * 14 13 11 16 16 C 1.50706 * 115.54881 * 174.24690 * 15 14 13 17 17 H 1.08000 * 119.99912 * 219.41047 * 16 15 14 18 18 C 1.37879 * 119.99965 * 39.68557 * 16 15 14 19 19 N 1.31512 * 119.99925 * 11.03058 * 18 16 15 20 20 Si 1.86796 * 119.99867 * 191.03135 * 18 16 15 21 21 H 1.48503 * 109.46878 * 90.00442 * 20 18 16 22 22 H 1.48502 * 109.47004 * 209.99736 * 20 18 16 23 23 H 1.48499 * 109.47491 * 330.00306 * 20 18 16 24 24 C 1.53001 * 117.51934 * 319.94544 * 15 14 13 25 25 C 1.52995 * 117.49922 * 28.57696 * 15 14 13 26 26 H 1.09003 * 109.47211 * 299.99984 * 1 2 3 27 27 H 1.08999 * 109.47157 * 60.00224 * 1 2 3 28 28 H 1.08999 * 109.46648 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47342 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47385 * 300.00426 * 3 2 1 31 31 H 1.09003 * 109.47091 * 59.99942 * 3 2 1 32 32 H 1.09002 * 109.46774 * 300.00164 * 4 2 1 33 33 H 1.08998 * 109.46885 * 59.99553 * 4 2 1 34 34 H 1.08994 * 109.47131 * 179.97438 * 4 2 1 35 35 H 1.08011 * 120.00229 * 0.02562 * 7 5 2 36 36 H 1.09007 * 110.62157 * 241.33837 * 10 9 8 37 37 H 1.08999 * 110.63005 * 118.31652 * 10 9 8 38 38 H 1.09003 * 109.47118 * 330.48264 * 14 13 11 39 39 H 1.09001 * 109.47584 * 210.47934 * 14 13 11 40 40 H 0.97002 * 120.00078 * 184.99146 * 19 18 16 41 41 H 1.08994 * 117.49781 * 214.96971 * 24 15 14 42 42 H 1.08996 * 117.49672 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.50055 * 359.97438 * 25 15 14 44 44 H 1.09009 * 117.49551 * 144.99533 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2416 -1.1732 2.0312 7 6 3.3995 -0.8370 1.4508 8 6 3.8601 -1.4877 2.5791 9 16 2.8620 -2.2227 3.8462 10 6 4.2850 -2.7852 4.8388 11 6 5.4788 -2.3216 4.0363 12 8 6.6234 -2.5173 4.3852 13 7 5.1667 -1.6840 2.9209 14 6 6.2305 -1.1803 2.0487 15 6 6.5975 -2.2523 1.0206 16 6 7.5870 -1.8294 -0.0346 17 1 7.4598 -2.1561 -1.0561 18 6 8.6577 -1.0299 0.3053 19 7 8.9416 -0.8142 1.5711 20 14 9.7049 -0.2532 -1.0323 21 1 9.1455 1.0751 -1.3902 22 1 11.0957 -0.0877 -0.5386 23 1 9.7062 -1.1292 -2.2314 24 6 6.6555 -3.7034 1.5023 25 6 5.5038 -3.2395 0.6083 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 4.1014 -0.4258 0.7402 36 1 4.2831 -3.8713 4.9315 37 1 4.2772 -2.3149 5.8221 38 1 7.1075 -0.9368 2.6486 39 1 5.8838 -0.2852 1.5323 40 1 9.6487 -0.1950 1.8109 41 1 7.4092 -4.3520 1.0560 42 1 6.4327 -3.8944 2.5520 43 1 4.5229 -3.1255 1.0697 44 1 5.4999 -3.5830 -0.4263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853641840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:51 Heat of formation + Delta-G solvation = -17.538091 kcal Electronic energy + Delta-G solvation = -26594.881513 eV Core-core repulsion = 23026.353530 eV Total energy + Delta-G solvation = -3568.527982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99731 -39.71266 -37.08953 -35.68185 -35.39080 -32.29945 -31.45598 -30.27460 -27.25474 -27.19684 -26.68359 -25.53757 -24.66230 -21.72651 -21.21177 -20.33150 -18.58843 -18.45070 -17.34980 -16.96659 -16.52311 -15.91033 -15.66314 -15.24907 -14.68781 -14.66373 -14.36194 -14.00881 -13.89159 -13.54533 -13.20720 -12.98075 -12.51864 -12.27809 -12.15546 -12.09175 -11.98224 -11.95598 -11.76562 -11.59294 -11.44061 -11.11495 -10.94468 -10.83674 -10.79422 -10.70093 -10.52796 -10.27661 -10.05547 -9.73355 -9.24390 -9.04851 -8.89851 -8.38367 -8.16737 -7.61179 -6.23461 -4.27284 0.79454 1.24284 1.80500 2.60308 2.96954 3.18944 3.27925 3.29901 3.30801 4.08505 4.25563 4.51250 4.84114 4.89503 4.93579 5.02531 5.18546 5.28286 5.38399 5.58550 5.65805 5.69348 5.81442 5.85454 5.92427 5.93285 5.95503 6.03244 6.05944 6.20107 6.22511 6.29162 6.33095 6.37737 6.52342 6.56163 6.62007 6.79246 6.97946 7.21277 7.30243 7.43946 7.73677 7.90389 7.99236 8.21498 8.70646 9.34444 10.81390 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.005767 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.834288 B = 4853.671593 C = 6638.145476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.399 3.601 6 O -0.481 6.481 7 C -0.298 4.298 8 C 0.219 3.781 9 S 0.000 6.000 10 C -0.189 4.189 11 C 0.516 3.484 12 O -0.461 6.461 13 N -0.536 5.536 14 C 0.128 3.872 15 C 0.046 3.954 16 C -0.489 4.489 17 H 0.067 0.933 18 C 0.069 3.931 19 N -0.875 5.875 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.198 4.198 25 C -0.209 4.209 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.078 0.922 40 H 0.265 0.735 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 2.120 0.959 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 C -0.194 4.194 4 C -0.195 4.195 5 C 0.283 3.717 6 O -0.364 6.364 7 C -0.333 4.333 8 C 0.002 3.998 9 S 0.242 5.758 10 C -0.340 4.340 11 C 0.302 3.698 12 O -0.333 6.333 13 N -0.255 5.255 14 C 0.007 3.993 15 C 0.045 3.955 16 C -0.527 4.527 17 H 0.085 0.915 18 C -0.135 4.135 19 N -0.512 5.512 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.236 4.236 25 C -0.247 4.247 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.852 1.613 2.059 14.096 hybrid contribution 2.037 0.452 -0.997 2.313 sum -11.814 2.066 1.061 12.040 Atomic orbital electron populations 1.21662 0.93230 1.02271 1.01419 1.20936 0.97073 0.96882 0.95544 1.21801 1.01990 0.93626 1.01984 1.21808 1.02329 0.99991 0.95367 1.19893 0.88222 0.77379 0.86163 1.90517 1.58892 1.42075 1.44898 1.21351 0.98199 1.14038 0.99735 1.23247 0.85840 0.94024 0.96723 1.87481 1.05660 1.65234 1.17464 1.24799 0.96514 1.08292 1.04403 1.19687 0.90709 0.78554 0.80882 1.90873 1.20601 1.52624 1.69163 1.45368 1.06609 1.51049 1.22519 1.22118 0.88204 0.96477 0.92480 1.19178 0.94900 0.86348 0.95061 1.20480 1.06876 1.31864 0.93468 0.91519 1.25023 0.96370 0.96477 0.95581 1.69878 1.31146 1.34399 1.15753 0.86519 0.79510 0.79804 0.81900 1.20305 1.21134 1.19708 1.22972 1.00496 1.03512 0.96660 1.23020 0.93162 1.09354 0.99126 0.92398 0.92662 0.92331 0.91472 0.91968 0.92561 0.92476 0.92059 0.91121 0.83024 0.84200 0.84178 0.84327 0.90332 0.92445 0.90394 0.91972 0.91276 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.76 37.16 0.29 -1.16 16 2 C -0.10 -1.26 0.85 -155.66 -0.13 -1.39 16 3 C -0.14 -1.48 8.29 37.16 0.31 -1.18 16 4 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 5 C 0.40 6.00 5.73 -34.00 -0.19 5.80 16 6 O -0.48 -8.11 13.76 5.20 0.07 -8.04 16 7 C -0.30 -4.75 7.29 -39.31 -0.29 -5.04 16 8 C 0.22 3.70 5.23 -15.52 -0.08 3.62 16 9 S 0.00 0.00 20.68 -107.50 -2.22 -2.22 16 10 C -0.19 -2.53 7.37 36.22 0.27 -2.26 16 11 C 0.52 9.48 6.16 -11.90 -0.07 9.41 16 12 O -0.46 -10.14 15.95 5.58 0.09 -10.05 16 13 N -0.54 -10.03 1.86 -114.45 -0.21 -10.24 16 14 C 0.13 2.79 4.56 -4.04 -0.02 2.77 16 15 C 0.05 1.08 2.30 -155.66 -0.36 0.72 16 16 C -0.49 -12.48 9.01 -34.44 -0.31 -12.79 16 17 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 18 C 0.07 1.77 5.24 -17.82 -0.09 1.67 16 19 N -0.88 -23.30 11.00 55.43 0.61 -22.69 16 20 Si 0.90 19.80 29.56 -169.99 -5.02 14.78 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.20 -4.58 9.58 -26.73 -0.26 -4.83 16 25 C -0.21 -4.39 9.38 -26.73 -0.25 -4.64 16 26 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.07 0.75 7.40 -51.93 -0.38 0.37 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.87 7.40 -51.93 -0.38 0.49 16 35 H 0.15 2.43 5.82 -52.48 -0.31 2.13 16 36 H 0.14 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.14 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.14 3.48 5.45 -51.93 -0.28 3.19 16 39 H 0.08 1.64 6.62 -51.93 -0.34 1.30 16 40 H 0.27 6.76 8.32 -40.82 -0.34 6.42 16 41 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 42 H 0.06 1.42 5.35 -51.93 -0.28 1.15 16 43 H 0.07 1.37 5.31 -51.93 -0.28 1.09 16 44 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -28.55 360.14 -8.59 -37.14 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.45 Total: 6.48 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.88 Total: -10.58 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.40 Total: -32.93 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.16 Total: -18.09 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.22 Total: -2.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.55 -8.59 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853641840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.602 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds