Wall clock time and date at job start Tue Mar 31 2020 14:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47246 * 240.00191 * 2 1 3 5 5 C 1.50704 * 109.47118 * 119.99920 * 2 1 3 6 6 O 1.21683 * 119.99956 * 0.02562 * 5 2 1 7 7 C 1.39054 * 119.99827 * 180.02562 * 5 2 1 8 8 C 1.38155 * 120.00308 * 179.97438 * 7 5 2 9 9 S 1.77256 * 126.25438 * 0.12195 * 8 7 5 10 10 C 1.82388 * 94.45193 * 180.19852 * 9 8 7 11 11 C 1.51135 * 103.45419 * 359.82379 * 10 9 8 12 12 O 1.21249 * 122.91398 * 180.02562 * 11 10 9 13 13 N 1.32211 * 114.16969 * 0.02562 * 11 10 9 14 14 C 1.46504 * 119.78066 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46850 * 90.47960 * 14 13 11 16 16 C 1.50706 * 115.54881 * 174.24690 * 15 14 13 17 17 H 1.08000 * 119.99912 * 219.41047 * 16 15 14 18 18 C 1.37879 * 119.99965 * 39.68557 * 16 15 14 19 19 N 1.31512 * 119.99925 * 11.03058 * 18 16 15 20 20 Si 1.86796 * 119.99867 * 191.03135 * 18 16 15 21 21 H 1.48503 * 109.46878 * 90.00442 * 20 18 16 22 22 H 1.48502 * 109.47004 * 209.99736 * 20 18 16 23 23 H 1.48499 * 109.47491 * 330.00306 * 20 18 16 24 24 C 1.53001 * 117.51934 * 319.94544 * 15 14 13 25 25 C 1.52995 * 117.49922 * 28.57696 * 15 14 13 26 26 H 1.09003 * 109.47211 * 299.99984 * 1 2 3 27 27 H 1.08999 * 109.47157 * 60.00224 * 1 2 3 28 28 H 1.08999 * 109.46648 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47342 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47385 * 300.00426 * 3 2 1 31 31 H 1.09003 * 109.47091 * 59.99942 * 3 2 1 32 32 H 1.09002 * 109.46774 * 300.00164 * 4 2 1 33 33 H 1.08998 * 109.46885 * 59.99553 * 4 2 1 34 34 H 1.08994 * 109.47131 * 179.97438 * 4 2 1 35 35 H 1.08011 * 120.00229 * 0.02562 * 7 5 2 36 36 H 1.09007 * 110.62157 * 241.33837 * 10 9 8 37 37 H 1.08999 * 110.63005 * 118.31652 * 10 9 8 38 38 H 1.09003 * 109.47118 * 330.48264 * 14 13 11 39 39 H 1.09001 * 109.47584 * 210.47934 * 14 13 11 40 40 H 0.97002 * 120.00078 * 184.99146 * 19 18 16 41 41 H 1.08994 * 117.49781 * 214.96971 * 24 15 14 42 42 H 1.08996 * 117.49672 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.50055 * 359.97438 * 25 15 14 44 44 H 1.09009 * 117.49551 * 144.99533 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2416 -1.1732 2.0312 7 6 3.3995 -0.8370 1.4508 8 6 3.8601 -1.4877 2.5791 9 16 2.8620 -2.2227 3.8462 10 6 4.2850 -2.7852 4.8388 11 6 5.4788 -2.3216 4.0363 12 8 6.6234 -2.5173 4.3852 13 7 5.1667 -1.6840 2.9209 14 6 6.2305 -1.1803 2.0487 15 6 6.5975 -2.2523 1.0206 16 6 7.5870 -1.8294 -0.0346 17 1 7.4598 -2.1561 -1.0561 18 6 8.6577 -1.0299 0.3053 19 7 8.9416 -0.8142 1.5711 20 14 9.7049 -0.2532 -1.0323 21 1 9.1455 1.0751 -1.3902 22 1 11.0957 -0.0877 -0.5386 23 1 9.7062 -1.1292 -2.2314 24 6 6.6555 -3.7034 1.5023 25 6 5.5038 -3.2395 0.6083 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 4.1014 -0.4258 0.7402 36 1 4.2831 -3.8713 4.9315 37 1 4.2772 -2.3149 5.8221 38 1 7.1075 -0.9368 2.6486 39 1 5.8838 -0.2852 1.5323 40 1 9.6487 -0.1950 1.8109 41 1 7.4092 -4.3520 1.0560 42 1 6.4327 -3.8944 2.5520 43 1 4.5229 -3.1255 1.0697 44 1 5.4999 -3.5830 -0.4263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853641840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:50 Heat of formation + Delta-G solvation = -30.975398 kcal Electronic energy + Delta-G solvation = -26595.464198 eV Core-core repulsion = 23026.353530 eV Total energy + Delta-G solvation = -3569.110668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.46162 -40.90147 -38.71153 -37.26973 -36.47457 -34.24978 -32.74629 -31.62885 -28.53278 -28.08598 -27.98393 -27.29014 -25.97642 -23.13011 -22.80483 -21.93087 -20.18227 -19.68012 -18.69339 -18.57263 -17.89311 -17.52794 -16.87005 -16.72604 -16.39048 -15.75947 -15.61611 -15.51586 -15.31643 -14.58301 -14.48644 -14.26647 -14.08126 -13.80360 -13.61617 -13.26716 -13.14152 -13.04004 -12.93279 -12.89702 -12.82370 -12.64909 -12.49597 -12.40652 -12.13493 -12.06105 -11.75221 -11.64684 -11.50756 -11.45876 -11.09943 -10.73140 -10.24663 -10.06783 -9.79909 -8.84203 -8.17340 -6.28305 -0.50717 0.02432 0.60470 1.22933 1.42816 1.45949 1.54953 1.60531 2.05762 2.40437 2.82489 2.94052 3.38107 3.52525 3.94770 3.95628 4.09994 4.11929 4.12980 4.21238 4.32137 4.36155 4.47594 4.63421 4.79409 4.80744 4.82894 4.84021 4.84874 4.95850 5.01690 5.05796 5.07575 5.09126 5.16081 5.22714 5.34490 5.42175 5.45366 5.49510 5.51435 5.74908 5.93720 6.25920 6.50431 6.73928 6.78619 7.36462 8.86045 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.005767 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.834288 B = 4853.671593 C = 6638.145476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.135 4.135 4 C -0.136 4.136 5 C 0.397 3.603 6 O -0.497 6.497 7 C -0.290 4.290 8 C 0.193 3.807 9 S 0.023 5.977 10 C -0.175 4.175 11 C 0.507 3.493 12 O -0.509 6.509 13 N -0.539 5.539 14 C 0.144 3.856 15 C 0.027 3.973 16 C -0.508 4.508 17 H 0.062 0.938 18 C 0.029 3.971 19 N -0.902 5.902 20 Si 0.956 3.044 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.270 1.270 24 C -0.209 4.209 25 C -0.178 4.178 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.148 0.852 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.264 0.736 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 2.589 0.170 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.193 4.193 5 C 0.282 3.718 6 O -0.381 6.381 7 C -0.326 4.326 8 C -0.022 4.022 9 S 0.266 5.734 10 C -0.325 4.325 11 C 0.296 3.704 12 O -0.384 6.384 13 N -0.259 5.259 14 C 0.022 3.978 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.540 5.540 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.216 1.216 23 H -0.195 1.195 24 C -0.247 4.247 25 C -0.215 4.215 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.183 0.817 37 H 0.190 0.810 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.842 2.078 1.264 16.027 hybrid contribution 2.581 0.292 -0.755 2.705 sum -13.260 2.370 0.509 13.480 Atomic orbital electron populations 1.21643 0.92259 1.01991 1.02313 1.20967 0.97801 0.97294 0.94182 1.21811 1.01538 0.92827 1.03084 1.21809 1.01590 1.00005 0.95918 1.20285 0.87551 0.77000 0.86917 1.90506 1.59128 1.42723 1.45756 1.21542 0.98825 1.12968 0.99239 1.23510 0.85347 0.95278 0.98105 1.87386 1.05201 1.64518 1.16340 1.24897 0.93076 1.09961 1.04568 1.20469 0.91488 0.77631 0.80847 1.90849 1.22772 1.54546 1.70251 1.45251 1.06740 1.51391 1.22477 1.21558 0.88202 0.96170 0.91914 1.19270 0.95870 0.86766 0.95498 1.20744 1.07716 1.32263 0.93786 0.91979 1.25705 0.97394 0.96861 0.97292 1.70034 1.31656 1.34897 1.17370 0.85579 0.77600 0.79330 0.79370 1.19108 1.21594 1.19454 1.22898 1.01499 1.03296 0.96977 1.22939 0.92866 1.06818 0.98920 0.92993 0.90290 0.93199 0.92217 0.89766 0.92613 0.92937 0.89782 0.92255 0.83440 0.81684 0.80992 0.87711 0.90236 0.92620 0.91854 0.92026 0.89890 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 7.76 71.98 0.56 -1.96 16 2 C -0.10 -2.27 0.85 -52.93 -0.05 -2.31 16 3 C -0.14 -2.64 8.29 71.98 0.60 -2.05 16 4 C -0.14 -2.84 8.29 71.98 0.60 -2.25 16 5 C 0.40 11.38 5.73 25.88 0.15 11.53 16 6 O -0.50 -16.00 13.76 -4.29 -0.06 -16.06 16 7 C -0.29 -9.02 7.29 22.45 0.16 -8.85 16 8 C 0.19 6.37 5.23 83.95 0.44 6.81 16 9 S 0.02 0.64 20.68 -56.49 -1.17 -0.53 16 10 C -0.18 -4.30 7.37 71.37 0.53 -3.77 16 11 C 0.51 18.57 6.16 88.19 0.54 19.11 16 12 O -0.51 -22.98 15.95 -2.93 -0.05 -23.02 16 13 N -0.54 -20.20 1.86 -635.84 -1.18 -21.39 16 14 C 0.14 6.44 4.56 86.38 0.39 6.83 16 15 C 0.03 1.29 2.30 -52.93 -0.12 1.17 16 16 C -0.51 -26.25 9.01 25.60 0.23 -26.01 16 17 H 0.06 3.18 7.84 -2.91 -0.02 3.16 16 18 C 0.03 1.48 5.24 84.66 0.44 1.92 16 19 N -0.90 -49.37 11.00 21.45 0.24 -49.14 16 20 Si 0.96 40.89 29.56 68.60 2.03 42.92 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 C -0.21 -9.79 9.58 30.60 0.29 -9.50 16 25 C -0.18 -7.41 9.38 30.59 0.29 -7.12 16 26 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.06 1.25 7.40 -2.39 -0.02 1.24 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.37 7.40 -2.39 -0.02 1.36 16 35 H 0.15 4.69 5.82 -2.90 -0.02 4.67 16 36 H 0.17 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.17 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.11 5.49 5.45 -2.39 -0.01 5.48 16 39 H 0.08 3.42 6.62 -2.39 -0.02 3.41 16 40 H 0.26 13.85 8.32 -92.71 -0.77 13.07 16 41 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.06 2.87 5.35 -2.39 -0.01 2.86 16 43 H 0.08 3.20 5.31 -2.39 -0.01 3.19 16 44 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -62.69 360.14 5.87 -56.82 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 1.01 Total: 26.84 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 5.05 Total: -16.44 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.94 Total: -70.52 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.11 Total: -39.08 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -1.17 Total: -0.53 kcal Total: -62.69 5.87 -56.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853641840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.844 kcal (2) G-P(sol) polarization free energy of solvation -62.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds