Wall clock time and date at job start Tue Mar 31 2020 14:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47532 * 2 1 4 4 C 1.53005 * 109.47249 * 298.15318 * 3 2 1 5 5 C 1.52996 * 109.47263 * 295.14797 * 4 3 2 6 6 C 1.52997 * 109.47289 * 58.15396 * 3 2 1 7 7 N 1.46500 * 109.47201 * 65.00033 * 6 3 2 8 8 C 1.46502 * 119.99598 * 270.00460 * 7 6 3 9 9 C 1.50704 * 109.47024 * 262.10539 * 8 7 6 10 10 H 1.07999 * 119.99698 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00285 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00109 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99809 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46793 * 89.99971 * 13 11 9 15 15 H 1.48495 * 109.46969 * 210.00074 * 13 11 9 16 16 H 1.48497 * 109.46869 * 330.00336 * 13 11 9 17 17 C 1.34773 * 120.00179 * 89.99812 * 7 6 3 18 18 O 1.21613 * 119.99764 * 1.56999 * 17 7 6 19 19 C 1.47290 * 120.00250 * 181.56210 * 17 7 6 20 20 C 1.36708 * 125.13780 * 172.66965 * 19 17 7 21 21 C 1.36646 * 114.78195 * 179.97438 * 20 19 17 22 22 C 1.37032 * 114.68703 * 0.02562 * 21 20 19 23 23 C 1.46282 * 125.17805 * 179.97438 * 22 21 20 24 24 O 1.21348 * 119.99927 * 0.02562 * 23 22 21 25 25 S 1.75822 * 125.13690 * 352.64571 * 19 17 7 26 26 H 1.08997 * 109.47780 * 184.46186 * 1 2 3 27 27 H 1.09005 * 109.46462 * 304.45909 * 1 2 3 28 28 H 1.08998 * 109.47215 * 64.45585 * 1 2 3 29 29 H 1.09007 * 109.46791 * 239.99678 * 2 1 3 30 30 H 1.08996 * 109.46923 * 120.00577 * 2 1 3 31 31 H 1.09002 * 109.47395 * 178.15278 * 3 2 1 32 32 H 1.09000 * 109.47018 * 55.14637 * 4 3 2 33 33 H 1.08995 * 109.47504 * 175.14436 * 4 3 2 34 34 H 1.09001 * 109.47004 * 305.37619 * 5 4 3 35 35 H 1.09005 * 109.47459 * 65.37377 * 5 4 3 36 36 H 1.09003 * 109.47561 * 185.37349 * 5 4 3 37 37 H 1.09008 * 109.47134 * 305.00206 * 6 3 2 38 38 H 1.09007 * 109.47570 * 185.00198 * 6 3 2 39 39 H 1.08988 * 109.47811 * 22.10891 * 8 7 6 40 40 H 1.09011 * 109.46790 * 142.11350 * 8 7 6 41 41 H 0.97008 * 119.99923 * 180.02562 * 12 11 9 42 42 H 1.07994 * 122.60754 * 0.02562 * 20 19 17 43 43 H 1.08000 * 122.65404 * 179.72704 * 21 20 19 44 44 H 1.07996 * 119.99578 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5684 2.1502 -1.2719 5 6 2.2130 1.4896 -2.4921 6 6 1.4926 2.1770 1.2253 7 7 2.0401 1.5723 2.4422 8 6 1.3323 0.4671 3.0933 9 6 0.5080 1.0022 4.2358 10 1 0.5107 2.0598 4.4547 11 6 -0.2497 0.1417 5.0016 12 7 -0.9694 0.6088 5.9983 13 14 -0.2550 -1.6874 4.6224 14 1 0.8276 -2.3549 5.3890 15 1 -1.5658 -2.2690 5.0081 16 1 -0.0310 -1.8922 3.1688 17 6 3.1949 2.0327 2.9627 18 8 3.7676 2.9687 2.4385 19 6 3.7632 1.4023 4.1665 20 6 4.9900 1.6861 4.6986 21 6 5.3055 0.9748 5.8219 22 6 4.3400 0.0927 6.2308 23 6 4.4375 -0.7814 7.3997 24 8 5.4331 -0.7584 8.0931 25 16 2.9659 0.1715 5.1365 26 1 -0.3634 -1.0245 0.0799 27 1 -0.3632 0.5815 0.8474 28 1 -0.3633 0.4431 -0.9272 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1296 1.4425 0.0331 32 1 0.4837 2.0749 -1.3486 33 1 1.8578 3.2003 -1.2320 34 1 3.2961 1.4797 -2.3701 35 1 1.8487 0.4665 -2.5863 36 1 1.9535 2.0517 -3.3892 37 1 0.4053 2.1005 1.2391 38 1 1.7823 3.2268 1.1792 39 1 0.6783 -0.0212 2.3710 40 1 2.0560 -0.2538 3.4738 41 1 -1.5022 0.0032 6.5373 42 1 5.6575 2.4162 4.2654 43 1 6.2437 1.0949 6.3433 44 1 3.6230 -1.4464 7.6461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865177949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:59 Heat of formation + Delta-G solvation = -45.448941 kcal Electronic energy + Delta-G solvation = -26118.640145 eV Core-core repulsion = 22548.901857 eV Total energy + Delta-G solvation = -3569.738288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.68252 -38.74620 -37.47039 -36.20782 -34.95139 -32.84683 -31.13803 -30.18929 -28.98711 -27.51768 -25.80224 -24.19013 -23.17364 -22.90997 -21.85845 -20.16736 -18.81219 -18.02185 -17.48966 -17.37646 -16.27109 -15.92878 -15.45542 -15.12560 -14.81297 -14.54045 -14.52792 -14.10105 -13.92520 -13.47950 -13.37868 -13.11958 -12.87533 -12.77049 -12.56991 -12.45870 -11.98853 -11.89176 -11.67563 -11.61676 -11.43228 -11.28945 -10.98499 -10.91988 -10.60052 -10.32219 -10.27365 -10.20618 -9.96666 -9.86862 -9.53806 -9.35000 -9.15182 -8.35927 -8.03022 -7.81448 -6.56820 -4.52614 0.53178 2.09694 2.30248 2.52936 2.92109 3.01457 3.06415 3.24642 3.56103 3.76280 3.94333 4.60246 4.73642 4.92570 4.95405 5.04153 5.13616 5.34810 5.44018 5.52439 5.61977 5.70383 5.73976 5.79450 5.86166 5.86734 5.94835 5.97611 5.98293 6.03381 6.15542 6.20631 6.25355 6.35756 6.38564 6.43470 6.50228 6.64467 6.67378 6.79264 6.99526 7.08057 7.63715 7.81246 8.04728 8.49664 8.67996 8.96397 10.53302 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.005586 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.512702 B = 5011.478798 C = 6524.795601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.118 4.118 5 C -0.150 4.150 6 C 0.122 3.878 7 N -0.585 5.585 8 C 0.190 3.810 9 C -0.536 4.536 10 H 0.090 0.910 11 C 0.090 3.910 12 N -0.863 5.863 13 Si 0.840 3.160 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.255 1.255 17 C 0.589 3.411 18 O -0.553 6.553 19 C -0.245 4.245 20 C -0.102 4.102 21 C -0.083 4.083 22 C -0.387 4.387 23 C 0.414 3.586 24 O -0.474 6.474 25 S 0.378 5.622 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.274 0.726 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -3.520 -9.330 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.159 4.159 3 C -0.123 4.123 4 C -0.156 4.156 5 C -0.207 4.207 6 C 0.000 4.000 7 N -0.314 5.314 8 C 0.066 3.934 9 C -0.578 4.578 10 H 0.108 0.892 11 C -0.118 4.118 12 N -0.497 5.497 13 Si 0.665 3.335 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.178 1.178 17 C 0.377 3.623 18 O -0.434 6.434 19 C -0.368 4.368 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.505 4.505 23 C 0.273 3.727 24 O -0.350 6.350 25 S 0.658 5.342 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.969 -3.884 -9.097 10.086 hybrid contribution 1.046 -0.177 0.117 1.067 sum 3.015 -4.062 -8.980 10.307 Atomic orbital electron populations 1.21989 0.95925 1.01749 1.02221 1.21608 0.96241 0.96344 1.01753 1.21596 1.00794 0.95397 0.94475 1.21523 1.00750 0.99469 0.93857 1.21778 1.00760 1.00676 0.97488 1.21524 0.98833 0.97373 0.82301 1.47692 1.22058 1.35541 1.26101 1.20284 0.92460 0.85741 0.94921 1.21478 1.26066 0.97741 1.12539 0.89226 1.24840 0.94147 0.98437 0.94383 1.69854 1.26546 1.35983 1.17321 0.87313 0.79629 0.85934 0.80673 1.18471 1.19740 1.17849 1.17121 0.80587 0.82501 0.82110 1.90709 1.61540 1.28767 1.62367 1.24988 1.00484 1.08316 1.03032 1.20215 0.95688 1.01443 0.96185 1.20333 0.99373 0.95751 0.96207 1.27137 1.05550 1.08827 1.09030 1.23012 0.88635 0.80535 0.80485 1.90487 1.33177 1.63295 1.48004 1.86194 1.06949 1.28938 1.12159 0.93128 0.91230 0.92719 0.92258 0.91763 0.91026 0.91513 0.91981 0.92914 0.92668 0.93149 0.89626 0.90324 0.91828 0.95670 0.91571 0.84033 0.84829 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.43 37.16 0.31 -1.73 16 2 C -0.12 -1.60 4.90 -26.73 -0.13 -1.73 16 3 C -0.10 -1.41 2.37 -90.62 -0.21 -1.63 16 4 C -0.12 -1.34 5.22 -26.73 -0.14 -1.47 16 5 C -0.15 -1.49 9.53 37.16 0.35 -1.14 16 6 C 0.12 1.98 4.65 -4.04 -0.02 1.97 16 7 N -0.58 -11.06 2.31 -176.38 -0.41 -11.46 16 8 C 0.19 3.70 2.65 -5.19 -0.01 3.68 16 9 C -0.54 -12.25 7.48 -34.44 -0.26 -12.51 16 10 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.09 2.11 5.06 -17.82 -0.09 2.02 16 12 N -0.86 -22.00 13.96 55.43 0.77 -21.23 16 13 Si 0.84 16.77 26.77 -169.99 -4.55 12.22 16 14 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.25 -4.75 6.54 56.52 0.37 -4.38 16 17 C 0.59 12.07 7.58 -12.58 -0.10 11.97 16 18 O -0.55 -12.21 16.40 5.27 0.09 -12.13 16 19 C -0.24 -4.79 6.25 -36.46 -0.23 -5.02 16 20 C -0.10 -1.83 9.88 -40.71 -0.40 -2.23 16 21 C -0.08 -1.44 9.89 -40.59 -0.40 -1.84 16 22 C -0.39 -6.81 6.44 -36.79 -0.24 -7.04 16 23 C 0.41 6.74 11.71 33.96 0.40 7.14 16 24 O -0.47 -8.81 17.63 5.50 0.10 -8.71 16 25 S 0.38 7.12 15.29 -107.50 -1.64 5.47 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.99 4.93 -51.93 -0.26 0.73 16 28 H 0.05 0.60 6.60 -51.93 -0.34 0.25 16 29 H 0.06 0.69 6.60 -51.92 -0.34 0.35 16 30 H 0.06 0.95 6.19 -51.93 -0.32 0.62 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.53 6.79 -51.93 -0.35 0.18 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 1.34 5.96 -51.92 -0.31 1.03 16 38 H 0.08 1.33 7.40 -51.93 -0.38 0.95 16 39 H 0.06 1.19 3.64 -51.94 -0.19 1.00 16 40 H 0.03 0.51 3.96 -22.36 -0.09 0.42 16 41 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 42 H 0.14 2.37 8.05 -52.49 -0.42 1.95 16 43 H 0.13 2.12 8.04 -52.49 -0.42 1.69 16 44 H 0.10 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -26.82 354.79 -7.35 -34.17 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.89 Total: 5.89 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.37 Total: -32.69 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.18 Total: -20.84 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -4.55 Total: 12.22 kcal Atomic # 16 Polarization: 7.12 SS G_CDS: -1.64 Total: 5.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.82 -7.35 -34.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865177949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.277 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds