Wall clock time and date at job start Tue Mar 31 2020 14:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.20822 * 119.99851 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.45198 * 116.99780 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46862 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00023 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00192 * 180.02562 * 9 8 7 12 12 C 1.37088 * 120.00380 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99708 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00319 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99629 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00206 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47253 * 89.99579 * 16 14 12 18 18 H 1.48493 * 109.47208 * 209.99704 * 16 14 12 19 19 H 1.48504 * 109.47236 * 330.00135 * 16 14 12 20 20 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 21 21 C 1.38243 * 119.97334 * 119.72959 * 20 2 1 22 22 C 1.38205 * 120.01946 * 179.72574 * 21 20 2 23 23 C 1.38458 * 119.97681 * 0.56554 * 22 21 20 24 24 F 1.35095 * 120.02756 * 179.67909 * 23 22 21 25 25 C 1.38461 * 119.94484 * 359.70854 * 23 22 21 26 26 C 1.38193 * 119.97683 * 359.97438 * 25 23 22 27 27 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 32 32 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 33 33 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 35 35 H 1.08997 * 109.47571 * 300.00009 * 8 7 5 36 36 H 1.08998 * 109.47370 * 60.00250 * 8 7 5 37 37 H 0.97006 * 119.99876 * 359.97438 * 11 9 8 38 38 H 0.97004 * 119.99437 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.99090 * 359.97438 * 21 20 2 40 40 H 1.08005 * 120.01097 * 180.24824 * 22 21 20 41 41 H 1.08008 * 120.00980 * 179.97438 * 25 23 22 42 42 H 1.08007 * 119.98852 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8435 0.9717 -2.3689 7 8 1.8624 -0.4692 -3.6988 8 6 1.3428 0.2647 -4.8389 9 6 1.8083 -0.3915 -6.1132 10 8 2.5088 -1.3806 -6.0652 11 7 1.4464 0.1208 -7.3061 12 6 1.8695 -0.4763 -8.4653 13 1 2.4932 -1.3571 -8.4226 14 6 1.4968 0.0521 -9.6953 15 7 0.7384 1.1240 -9.7472 16 14 2.0739 -0.7611 -11.2748 17 1 1.0840 -1.7855 -11.6945 18 1 2.2064 0.2649 -12.3400 19 1 3.3901 -1.4096 -11.0455 20 6 2.0323 -0.7105 1.2305 21 6 2.8224 -1.8377 1.1030 22 6 3.2883 -2.4867 2.2307 23 6 2.9538 -2.0144 3.4885 24 9 3.4033 -2.6518 4.5916 25 6 2.1577 -0.8886 3.6149 26 6 1.6984 -0.2374 2.4858 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 0.2533 0.2632 -4.8061 36 1 1.7058 1.2919 -4.8059 37 1 0.8860 0.9116 -7.3445 38 1 0.4779 1.4927 -10.6058 39 1 3.0790 -2.2089 0.1218 40 1 3.9089 -3.3650 2.1309 41 1 1.8957 -0.5195 4.5956 42 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869861080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:41 Heat of formation + Delta-G solvation = -148.072639 kcal Electronic energy + Delta-G solvation = -26256.366687 eV Core-core repulsion = 22115.965126 eV Total energy + Delta-G solvation = -4140.401561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.17302 -40.96118 -39.70260 -38.22189 -36.77633 -35.46203 -34.02084 -31.70557 -31.40342 -30.01478 -29.25154 -27.77067 -27.40448 -24.66614 -23.54787 -23.10871 -21.22604 -19.66819 -19.43364 -18.27141 -18.07578 -17.50362 -16.62566 -16.53722 -16.09248 -15.92793 -15.87925 -15.32593 -14.74144 -14.69658 -14.44818 -14.08568 -14.07662 -13.90020 -13.71293 -13.39320 -13.10588 -12.83839 -12.63645 -12.42426 -12.00233 -11.98415 -11.66716 -11.63636 -11.54727 -11.38226 -11.18806 -11.13469 -10.86309 -10.45698 -10.35959 -10.32272 -10.01757 -9.62356 -9.44492 -8.85074 -8.54215 -8.10212 -6.51852 -3.93842 0.80745 0.89156 2.26575 2.67990 3.11900 3.22300 3.23924 3.28382 3.71875 3.94693 4.08179 4.17580 4.31438 4.54782 4.56846 4.67921 4.70464 4.91082 4.94315 5.07234 5.13132 5.16035 5.31748 5.36468 5.50718 5.54460 5.56651 5.61722 5.67577 5.69994 5.78244 5.81855 5.84133 5.93571 6.02317 6.13916 6.21698 6.24676 6.54887 6.73444 7.46044 7.83394 7.94885 8.46638 9.05351 9.37462 9.87371 10.65320 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.002030 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.110180 B =13792.527491 C =14468.278796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.008 4.008 3 C -0.154 4.154 4 C -0.110 4.110 5 C 0.460 3.540 6 O -0.506 6.506 7 O -0.326 6.326 8 C 0.061 3.939 9 C 0.437 3.563 10 O -0.577 6.577 11 N -0.553 5.553 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.024 3.976 15 N -0.897 5.897 16 Si 0.934 3.066 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 C -0.075 4.075 21 C -0.096 4.096 22 C -0.148 4.148 23 C 0.089 3.911 24 F -0.143 7.143 25 C -0.151 4.151 26 C -0.083 4.083 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -0.645 24.133 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 C -0.211 4.211 4 C -0.148 4.148 5 C 0.304 3.696 6 O -0.396 6.396 7 O -0.240 6.240 8 C -0.017 4.017 9 C 0.222 3.778 10 O -0.461 6.461 11 N -0.190 5.190 12 C -0.432 4.432 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.537 5.537 16 Si 0.761 3.239 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.075 4.075 21 C -0.114 4.114 22 C -0.167 4.167 23 C 0.070 3.930 24 F -0.122 7.122 25 C -0.170 4.170 26 C -0.101 4.101 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.660 -0.936 24.026 24.053 hybrid contribution -0.092 0.111 -0.592 0.609 sum 0.568 -0.826 23.434 23.455 Atomic orbital electron populations 1.22172 0.92598 1.02241 1.04049 1.19272 0.96794 0.95403 0.89382 1.22173 1.00743 0.94091 1.04050 1.21599 1.03535 1.00851 0.88811 1.23586 0.77712 0.82987 0.85309 1.90533 1.35955 1.26094 1.87027 1.86557 1.68666 1.54691 1.14115 1.22735 0.99513 0.95607 0.83799 1.19346 0.86835 0.87663 0.83955 1.90563 1.41354 1.27522 1.86625 1.41711 1.45678 1.27659 1.03953 1.19723 1.29815 1.11466 0.82157 0.87621 1.25319 0.96584 0.96213 0.99682 1.69616 1.35549 1.21397 1.27182 0.85793 0.79333 0.78545 0.80254 1.20255 1.20813 1.19277 1.19871 0.97609 0.95555 0.94501 1.21149 0.96621 0.94724 0.98871 1.21180 1.02586 1.01943 0.90993 1.17754 0.98713 0.93754 0.82819 1.91495 1.87608 1.81109 1.51942 1.21127 0.99817 0.95779 1.00280 1.20831 0.98886 0.99550 0.90862 0.92410 0.89271 0.92828 0.92826 0.89262 0.92417 0.87201 0.87207 0.89545 0.89551 0.77165 0.91623 0.84271 0.84641 0.84825 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.99 37.16 0.30 -1.14 16 2 C -0.01 -0.08 0.60 -155.66 -0.09 -0.17 16 3 C -0.15 -1.44 7.99 37.16 0.30 -1.14 16 4 C -0.11 -1.10 3.54 -27.88 -0.10 -1.19 16 5 C 0.46 6.40 7.37 36.00 0.27 6.67 16 6 O -0.51 -7.49 11.10 -18.75 -0.21 -7.69 16 7 O -0.33 -5.70 9.75 -45.90 -0.45 -6.15 16 8 C 0.06 1.11 5.94 36.01 0.21 1.33 16 9 C 0.44 10.34 7.86 -10.98 -0.09 10.26 16 10 O -0.58 -15.81 16.08 -14.11 -0.23 -16.03 16 11 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 12 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 13 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 14 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 15 N -0.90 -23.82 13.05 55.50 0.72 -23.09 16 16 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C -0.08 -0.62 4.76 -104.62 -0.50 -1.12 16 21 C -0.10 -0.77 8.97 -39.59 -0.36 -1.12 16 22 C -0.15 -1.22 10.03 -39.51 -0.40 -1.62 16 23 C 0.09 0.80 7.30 -39.42 -0.29 0.51 16 24 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 25 C -0.15 -1.19 10.03 -39.52 -0.40 -1.59 16 26 C -0.08 -0.64 8.71 -39.60 -0.34 -0.98 16 27 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 28 H 0.09 1.02 5.52 -51.93 -0.29 0.73 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.02 5.52 -51.93 -0.29 0.73 16 32 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 33 H 0.11 0.95 7.52 -51.93 -0.39 0.56 16 34 H 0.11 0.94 7.50 -51.93 -0.39 0.55 16 35 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 36 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 37 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.14 0.93 5.89 -52.49 -0.31 0.62 16 40 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.13 0.82 7.10 -52.48 -0.37 0.45 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -31.57 355.54 -6.74 -38.31 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.17 Total: 8.20 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.72 Total: 0.82 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.67 Total: -36.93 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.88 Total: -29.88 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.57 -6.74 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869861080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.767 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds