Wall clock time and date at job start Tue Mar 31 2020 14:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.20822 * 119.99851 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.45198 * 116.99780 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46862 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00023 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00192 * 180.02562 * 9 8 7 12 12 C 1.37088 * 120.00380 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99708 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00319 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99629 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00206 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47253 * 89.99579 * 16 14 12 18 18 H 1.48493 * 109.47208 * 209.99704 * 16 14 12 19 19 H 1.48504 * 109.47236 * 330.00135 * 16 14 12 20 20 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 21 21 C 1.38243 * 119.97334 * 119.72959 * 20 2 1 22 22 C 1.38205 * 120.01946 * 179.72574 * 21 20 2 23 23 C 1.38458 * 119.97681 * 0.56554 * 22 21 20 24 24 F 1.35095 * 120.02756 * 179.67909 * 23 22 21 25 25 C 1.38461 * 119.94484 * 359.70854 * 23 22 21 26 26 C 1.38193 * 119.97683 * 359.97438 * 25 23 22 27 27 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 32 32 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 33 33 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 35 35 H 1.08997 * 109.47571 * 300.00009 * 8 7 5 36 36 H 1.08998 * 109.47370 * 60.00250 * 8 7 5 37 37 H 0.97006 * 119.99876 * 359.97438 * 11 9 8 38 38 H 0.97004 * 119.99437 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.99090 * 359.97438 * 21 20 2 40 40 H 1.08005 * 120.01097 * 180.24824 * 22 21 20 41 41 H 1.08008 * 120.00980 * 179.97438 * 25 23 22 42 42 H 1.08007 * 119.98852 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8435 0.9717 -2.3689 7 8 1.8624 -0.4692 -3.6988 8 6 1.3428 0.2647 -4.8389 9 6 1.8083 -0.3915 -6.1132 10 8 2.5088 -1.3806 -6.0652 11 7 1.4464 0.1208 -7.3061 12 6 1.8695 -0.4763 -8.4653 13 1 2.4932 -1.3571 -8.4226 14 6 1.4968 0.0521 -9.6953 15 7 0.7384 1.1240 -9.7472 16 14 2.0739 -0.7611 -11.2748 17 1 1.0840 -1.7855 -11.6945 18 1 2.2064 0.2649 -12.3400 19 1 3.3901 -1.4096 -11.0455 20 6 2.0323 -0.7105 1.2305 21 6 2.8224 -1.8377 1.1030 22 6 3.2883 -2.4867 2.2307 23 6 2.9538 -2.0144 3.4885 24 9 3.4033 -2.6518 4.5916 25 6 2.1577 -0.8886 3.6149 26 6 1.6984 -0.2374 2.4858 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 0.2533 0.2632 -4.8061 36 1 1.7058 1.2919 -4.8059 37 1 0.8860 0.9116 -7.3445 38 1 0.4779 1.4927 -10.6058 39 1 3.0790 -2.2089 0.1218 40 1 3.9089 -3.3650 2.1309 41 1 1.8957 -0.5195 4.5956 42 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869861080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:41 Heat of formation + Delta-G solvation = -165.062431 kcal Electronic energy + Delta-G solvation = -26257.103420 eV Core-core repulsion = 22115.965126 eV Total energy + Delta-G solvation = -4141.138294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86658 -41.98258 -40.62020 -39.93894 -37.91416 -36.41699 -36.01548 -33.41278 -32.31193 -30.92251 -30.19663 -29.02725 -28.13649 -26.53414 -24.30936 -23.73545 -22.27471 -21.40687 -20.31210 -20.05266 -19.06974 -18.47169 -17.82889 -17.78139 -17.29901 -17.02786 -16.57016 -16.54724 -16.08816 -15.93902 -15.75173 -15.33132 -15.14380 -14.80375 -14.48184 -14.30970 -14.21366 -14.03983 -13.69379 -13.56466 -13.31810 -13.23373 -12.95190 -12.73032 -12.47902 -12.47108 -12.31254 -12.17491 -12.11738 -11.91255 -11.65813 -11.55466 -11.52676 -11.04662 -10.49349 -10.11370 -10.02808 -9.49646 -8.52208 -6.02626 0.17278 0.30948 1.17781 1.36323 1.39838 1.47930 1.58970 1.88133 2.30319 2.62918 3.05802 3.13539 3.32784 3.44495 3.60961 3.87796 3.94159 3.95040 4.00395 4.11261 4.19581 4.24469 4.29545 4.35807 4.49520 4.58943 4.63229 4.87030 4.94621 4.96884 5.02687 5.06450 5.14828 5.18667 5.26332 5.32770 5.37198 5.46012 5.59393 5.67725 5.90055 5.95288 6.47040 6.74390 7.03557 7.40798 7.94418 8.64717 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.002030 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.110180 B =13792.527491 C =14468.278796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.001 4.001 3 C -0.152 4.152 4 C -0.108 4.108 5 C 0.459 3.541 6 O -0.515 6.515 7 O -0.348 6.348 8 C 0.073 3.927 9 C 0.435 3.565 10 O -0.619 6.619 11 N -0.559 5.559 12 C -0.338 4.338 13 H 0.084 0.916 14 C -0.010 4.010 15 N -0.915 5.915 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.270 1.270 19 H -0.271 1.271 20 C -0.077 4.077 21 C -0.100 4.100 22 C -0.153 4.153 23 C 0.070 3.930 24 F -0.152 7.152 25 C -0.152 4.152 26 C -0.084 4.084 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -0.426 24.867 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.001 4.001 3 C -0.209 4.209 4 C -0.145 4.145 5 C 0.304 3.696 6 O -0.404 6.404 7 O -0.263 6.263 8 C -0.004 4.004 9 C 0.222 3.778 10 O -0.506 6.506 11 N -0.196 5.196 12 C -0.467 4.467 13 H 0.102 0.898 14 C -0.210 4.210 15 N -0.555 5.555 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.196 1.196 20 C -0.078 4.078 21 C -0.118 4.118 22 C -0.172 4.172 23 C 0.051 3.949 24 F -0.131 7.131 25 C -0.171 4.171 26 C -0.102 4.102 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.459 -0.686 24.781 24.794 hybrid contribution -0.058 0.072 -0.734 0.740 sum 0.401 -0.614 24.047 24.058 Atomic orbital electron populations 1.22136 0.92846 1.02326 1.03629 1.19184 0.96518 0.95174 0.89228 1.22137 1.00937 0.94233 1.03630 1.21797 1.04510 1.01277 0.86954 1.24337 0.77360 0.83048 0.84899 1.90547 1.36357 1.26614 1.86889 1.86564 1.69411 1.55353 1.14984 1.22459 1.00410 0.95604 0.81955 1.20203 0.85453 0.86912 0.85229 1.90525 1.43060 1.29441 1.87537 1.41756 1.45914 1.27848 1.04129 1.19710 1.31238 1.11921 0.83795 0.89806 1.26126 0.96174 0.96553 1.02193 1.69673 1.35595 1.21903 1.28334 0.84858 0.78699 0.77927 0.76445 1.19466 1.19467 1.19556 1.19818 0.97938 0.95720 0.94294 1.21307 0.96453 0.94625 0.99384 1.21354 1.02663 1.02364 0.90828 1.18028 0.99554 0.94461 0.82868 1.91469 1.87840 1.81384 1.52422 1.21330 0.99253 0.95306 1.01204 1.21014 0.98773 0.99921 0.90446 0.91045 0.91424 0.92497 0.92501 0.91416 0.91050 0.85597 0.85591 0.87626 0.87644 0.76572 0.90991 0.83066 0.83577 0.83299 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 7.99 71.98 0.58 -2.01 16 2 C 0.00 -0.01 0.60 -52.93 -0.03 -0.05 16 3 C -0.15 -2.58 7.99 71.98 0.58 -2.01 16 4 C -0.11 -1.95 3.54 29.85 0.11 -1.84 16 5 C 0.46 12.23 7.37 71.23 0.53 12.76 16 6 O -0.51 -14.70 11.10 21.98 0.24 -14.46 16 7 O -0.35 -11.93 9.75 -45.06 -0.44 -12.37 16 8 C 0.07 2.62 5.94 71.24 0.42 3.05 16 9 C 0.44 20.86 7.86 87.66 0.69 21.55 16 10 O -0.62 -34.71 16.08 15.73 0.25 -34.46 16 11 N -0.56 -28.31 5.29 -306.98 -1.62 -29.93 16 12 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 13 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 15 N -0.92 -48.16 13.05 21.66 0.28 -47.88 16 16 Si 1.00 41.70 29.55 68.60 2.03 43.72 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 C -0.08 -1.11 4.76 -19.86 -0.09 -1.20 16 21 C -0.10 -1.39 8.97 22.26 0.20 -1.19 16 22 C -0.15 -2.29 10.03 22.31 0.22 -2.06 16 23 C 0.07 1.17 7.30 22.38 0.16 1.33 16 24 F -0.15 -2.90 17.27 44.97 0.78 -2.13 16 25 C -0.15 -2.11 10.03 22.31 0.22 -1.88 16 26 C -0.08 -1.08 8.71 22.26 0.19 -0.89 16 27 H 0.07 0.99 7.39 -2.39 -0.02 0.97 16 28 H 0.07 1.47 5.52 -2.39 -0.01 1.46 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 1.47 5.52 -2.39 -0.01 1.46 16 32 H 0.07 0.99 7.39 -2.39 -0.02 0.97 16 33 H 0.13 1.89 7.52 -2.38 -0.02 1.87 16 34 H 0.13 1.89 7.50 -2.39 -0.02 1.87 16 35 H 0.11 3.39 8.13 -2.39 -0.02 3.37 16 36 H 0.11 3.38 8.13 -2.39 -0.02 3.36 16 37 H 0.40 19.04 7.90 -92.70 -0.73 18.31 16 38 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.15 1.66 5.89 -2.91 -0.02 1.64 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.15 1.40 7.10 -2.91 -0.02 1.38 16 Total: -1.00 -68.08 355.54 6.91 -61.17 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.34 Total: 28.79 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.05 Total: 7.54 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -1.34 Total: -77.81 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: 0.06 Total: -61.29 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -68.08 6.91 -61.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869861080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.891 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds